Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F36 I0 R1
|
179 |
8076.5 |
8499890 |
98.3% |
8355391 |
135.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,370,579 |
C→A |
18.6% |
D92Y (GAT→TAT) |
rluD ← |
23S rRNA pseudouridine(1911/1915/1917) synthase RluD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,370,579 | 0 | C | A | 18.6%
| 272.6
/ 10.8
| 179 | D92Y (GAT→TAT) | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD |
| Reads supporting (aligned to +/- strand): ref base C (72/60); new base A (40/2); total (117/62) |
| Fisher's exact test for biased strand distribution p-value = 2.49e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 197 total aligned reads displayed.
GACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGC‑TCGCCACCCAATACTTTTTCTTTCGGCTTATCACACACTTTGCCGTTAACCAGC > NZ_CP022686/1370441‑1370718
|
gacgatggacgatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCATTACCATACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATTACCATGATatct > 6:210973/1‑140 (MQ=255)
gacgatggacgatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATatct > 6:805647/1‑140 (MQ=255)
acgatggacgatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATatctt > 2:500166/1‑140 (MQ=255)
acgatggacgatgCCAGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCAGGGTTACCCGCGCCAGGATGTACCACCCGGTCGAGTGGGTTAGAAATAAAGATGATatcat > 1:667542/1‑138 (MQ=255)
atggacgatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATatcttcat < 1:457632/140‑1 (MQ=255)
ggacgatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGGTTTTTTATTACGATGTTatgatcatcg > 5:91934/1‑139 (MQ=255)
gatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATcttcatcttcat < 2:561734/140‑1 (MQ=255)
gatgCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCAGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATcttcatcttcat < 2:691871/140‑1 (MQ=255)
gCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGa < 1:598365/140‑1 (MQ=255)
ccGCTCGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACg < 5:300582/140‑1 (MQ=255)
ccGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACg < 1:720741/140‑1 (MQ=255)
gCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACg < 7:929194/138‑1 (MQ=255)
cACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGGTTATTAAATCCGATGATAAAATCATATTAATAGCCGata > 5:169677/1‑140 (MQ=255)
cgcgGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTAACCGCGCCAGTATGTACCACCAGGTAGCGTGGTTTATTTATTACGATGATATCTTCATCTTAATAGACGataaa > 2:805028/1‑138 (MQ=255)
cgGTACCTCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGCTACCCGAGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCa < 6:402011/140‑1 (MQ=255)
cgGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCa < 2:704002/140‑1 (MQ=255)
cgGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCa < 3:481566/140‑1 (MQ=255)
cgGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGGTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCa < 2:1057268/140‑1 (MQ=255)
ggTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGTTTATTAATTACGCTGATTTATTAATCTTAATAGACGATATACac > 1:1014996/1‑139 (MQ=255)
gTACATCGGCAATGGGCGGATAGTAATGACGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGTTTATTAATGACGATGATATCTTAGTCGTGCTATACGatataccgc > 4:80276/1‑135 (MQ=255)
gTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGTTTATTAATGACGATGATATATTCATCTTCATAGACGATATCCAGc > 2:603930/1‑140 (MQ=255)
gTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACACGCGCCAGGATGTACCACCAGGTCGCGGGGGTATTTAATGAAGAATATATAGTAAACATCATAGAAGAAATACaac > 1:1004034/1‑138 (MQ=255)
cATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCTCGCCAGTATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATATACGATATCCAGCggg < 5:988554/140‑1 (MQ=255)
tCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGat < 3:279854/140‑1 (MQ=255)
cAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTTTTTATGACGATTATATATTCATGATCATAGACGCTAAACAGCGGGatatac > 5:862609/1‑138 (MQ=255)
aTGGGCGGATAGTAATGAAGCAACGCTTTCCGTACCGTACCCTCCGGGGTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTg < 1:1030376/140‑1 (MQ=255)
aTGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATTATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTg > 4:958643/1‑140 (MQ=255)
aTGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATATACGATATCCAGCGGGATATACTg > 5:313121/1‑140 (MQ=255)
aTGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTg < 3:754442/140‑1 (MQ=255)
aTGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGGTTTTTATTTACGATGATTTCTTAATATTAATAGACGATATACAGCGGGATATACTg > 1:955472/1‑140 (MQ=255)
aTGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGGTTATTAATGCAGATGATATCTGGATCTGACTATACGCTATACAGCGGGATATccag > 6:879115/1‑138 (MQ=255)
aTGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGGTTATTAATGACGATGATATCTTGATATTCAAAGACGATATCCACCGGGatatacgg > 1:1072384/1‑136 (MQ=255)
aTGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACACGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTAATCTTCATAGACGAAATCCAGCGGGCTATACTg > 4:228085/1‑140 (MQ=255)
aTGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCAGGGTTACCCGCGCCAGTATGTACCACCAGGTCGCGTTGGTTATTAATTACGATGATATATTCAAATACATAGACAATATCCAGCGGGATATccat > 5:71950/1‑138 (MQ=255)
aTGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCAGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTTATTACGATGATATCTTGATATTCATAGACGCTATACAGCGGGATTTCCTg > 4:271065/1‑140 (MQ=255)
gggCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGGGGGATATCCTg > 8:596633/1‑138 (MQ=255)
gggCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTAATATACGATATCCAGCGGGCTATCCTg > 7:679755/1‑138 (MQ=255)
gggCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGTGTGTTTTAATTCCGATGCTATCTTCATCTTGATAGACGAAATCGCGCGGGATATGCTg > 7:498982/1‑138 (MQ=255)
gggCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACACGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGCTGAATTATTCATCGTCATAGCAGAGATCCAGCGGGATATCCTg > 8:6214/1‑138 (MQ=255)
ggCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCCTCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGGTTATTTATGACGATACTATCTTCCTGGTCATAGACGAGATACAGCGGGCTATCCAGCgg > 3:159957/1‑140 (MQ=255)
tAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACCATATCCAGCGGGATATCCAGCgggtaa > 8:281587/1‑134 (MQ=255)
aGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCaaaa < 2:888790/140‑1 (MQ=255)
aTGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTTATTACGATGCTATCTTGATCTTAATAGACGATATACAGCGGGATATCCGGCGGTTCAAAAcggg > 2:50389/1‑138 (MQ=255)
aTGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGGTTTTTAATTACGATGATATATTACACTTAATAGCAGATATACACCGGGATTTCCATCGGTTGAAAAcgcc > 4:1068854/1‑139 (MQ=255)
gAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGGTTATTAATGACGATGATATATTCATCTTCATAGACGATTTCCAGCGGGATATCCTGCGGTTCAAAAcgcg > 8:493124/1‑138 (MQ=255)
aGCAACGCATTCAGTACCGTACCAGCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGTTTTTTTATGACGATGATATCTTCATCTTCATAGACGAATACCCGCGGGATTTCCTGCGGGTGAAAACCCGcgtc > 5:392492/1‑140 (MQ=255)
cAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGGTTTTTAATGACGATGATTTCTTAATCTTCATATACGATATCCAGCGGGCTATCCTTCGGTTCAAAACGCGcttcgt > 3:713546/1‑138 (MQ=255)
cAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGGTTATTAATGACGATGATTTCTTAATCTTCATAGACGATATCAAGCGGGATATACTGCGGGTCAAAACGCGcttatt > 3:428742/1‑140 (MQ=255)
aCGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTAATAATTACGAATATATCTTAAAATTACTAAACGATATCCAGCGGGATATCCAGCGGTTCAAAACGCGcatcttct > 3:254508/1‑140 (MQ=255)
aCGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGTTTATTTATTTCGATGATATATTGATCTTAATATACGATATACAGCGGGGTATACTGCGGTTGAAAAAGCGcgtcttat > 1:362804/1‑138 (MQ=255)
aCGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGTTTATTAAAGACGATGAAATATTAATCTTCATAGACCAAAACCAGCGGGATATCCAGCGGTTAAAAACCCGcttattga > 4:315223/1‑138 (MQ=255)
aCGCATTCAGTACCGTACCATACGGGTTACCCGCGCCAGGATGTACAACCAGGTCGCGGGGTTTATTAATGACGATGATATATTCATCTTCATATACGATATACATCGGGATAACCAGCGGTTCAAAACGCGcatgttct > 4:216430/1‑140 (MQ=255)
cGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTTTTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATACTGCGGTTCAAAAAGCGcttcatctt > 3:793712/1‑140 (MQ=255)
gCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAAAGACGAAGAAATATTCATCTTAATATACCATATCCATCGGGATATACTGCGGTTCAAAACCCGcttcttaa > 7:613131/1‑136 (MQ=255)
ttCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAAt < 2:292571/140‑1 (MQ=255)
ttaccgtaccATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAAtct < 7:13611/137‑1 (MQ=255)
ccgtaccATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAg < 8:12717/138‑1 (MQ=255)
cgtaccATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATATTCATCTTCATAGACGATATACAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCgg > 6:615435/1‑139 (MQ=255)
taccATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATATTCATCTTAAAACACGATATCCAGCGGGAAATACTGCGGTTAAAAACACGCTTATTATTCAATCTCAGCGTTg > 4:620563/1‑140 (MQ=255)
taccATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGGTTATTTATTACGATGATATATTAATATTAATATACGATATACAACGGGATATACTGCGGTTAGAAAACCGCTTCTTCTTGAATATCAGCGTTg > 1:692635/1‑140 (MQ=255)
ccATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGTTTAATAATGACCAAGATATCTTCAACTTCATAGACGATATCCAGCGGGATATACTGCGGGTCAAAACGCGCGTCTTCTTCAATCTCAGCGTTg > 8:1010192/1‑138 (MQ=255)
ccATCCGGGTTACCCGCGCCAGGATGTACAACCAGGTCGCGTGGTTTATTAATGAAGAATATATATTAATATTAATAGAAGATTTACAGCTGGATATACTTCGTTTCAAAACGAGCTTCTTGTTCAATATAAGAGttt > 7:951685/1‑137 (MQ=255)
tCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTTTTAATTAAGATGTTATCTTGATATTAATATACGATATACAGCGGGATATACTGCCGGTCAAAACGCGCCTGTTGTTCAAAATGATCGTTGATggg > 1:257978/1‑139 (MQ=255)
tCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTTTTAATGACGATGATTTATTAATAATCCTATACCAAATACATCGGGATATACAGCGGTTCAAAACGCGCTTATTCTTGAATATAAGCGTTGATGGc > 1:138141/1‑140 (MQ=255)
tCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGc < 4:742424/140‑1 (MQ=255)
tCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGTTTATTAATGACGATTATATCTTAATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTGAATCTCAGCGTTGATTGc > 3:678541/1‑140 (MQ=255)
tCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGTTTATTAATGACGATGATATCTTCATCTTAATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGGTGATGGc > 4:845962/1‑140 (MQ=255)
cGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGGTTTTTTATGACGATGATATCTTCATCTTAATAGACCAGATCCACCGGTATATCCTGCGGTACAAACAGCGCTTCTTCTTACATCTCATCGTTGaagtc > 8:681440/1‑134 (MQ=255)
cGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGGGGGTTATTAATGACGCTGATTTCTTCATCTTCAAAGACGAAATAAAGCGGGATAAACTGCGGTAGAAACCGCGCATCATCATAAAAATAAGCGatgatgtg > 8:940592/1‑136 (MQ=255)
cAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGC‑TCGCCAccc < 4:407085/140‑1 (MQ=255)
cAGGACGTACCACCTGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCTTAGACGATATGCAGCGGGATATCCTGCGTTTCAAAACGCGCTTCTTCTTCTATCTCAGCGTTGATGGCCACCTGC‑TCTCCAc < 8:784939/138‑1 (MQ=255)
ggATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGC‑TCGCCACCCaa < 5:785940/140‑1 (MQ=255)
tACCACCATGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGC‑TCGCCACCCAATACtt < 3:130955/140‑1 (MQ=255)
accaccAGGTCGCGGGGTTTATTAATGACGATGATATATTGATCTTCAAAGACGCTATACACCCGGTTATACTGCGGTTTAAAACGCGCTTCTTATTAAATATCAGCGTTGATGGCCACCAGCGACGCCA‑CCAATAAttt > 6:585389/1‑140 (MQ=255)
accaccAGGTCGCGGGGTTTATTAATGACGATGATATATTCATATTCATAGACGATATACAGCGGGATATACTGCGGTTCAAAACGCGCTTCTTCTTCAATCTAAGCGTTGATGGCCCCCGGC‑TCGCCACCCAATACttt > 6:966786/1‑140 (MQ=255)
ccaccaGGTCGCGTGGGTTTTTTATGACGCTGATATGTTGATGTTCATTGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTGTTCTTGAATCTCAGCGTTGATGGCCCCCGGC‑TCGCCCCCCAATACtt > 7:815231/1‑138 (MQ=255)
ccaGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGC‑TCGCCACCCAATACTTtttct > 6:4351/1‑140 (MQ=255)
ccaGGTCGCGGGGGTTATTAATGACGATGATATCTTCATCTTAAAAGACGATATCCAGCCGGATATCCTTCGGTTAAAAACGCCCTTGTTCTTCAATCTCAGCGTTGAAGGCCACCTGC‑GCGCCCCCCAGAACtttttgt > 6:543779/1‑138 (MQ=255)
ggTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATATCAGCGTTGATGGCCACCTGC‑TCGCCACCCAATACTTtttcttta > 2:315812/1‑139 (MQ=255)
ggTCGCGTGGTTTATTAATGACGATGATATATTCATATTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCCTTGATGGCCACCAGC‑TCGCCACCCAATACTTtttattta > 2:190097/1‑139 (MQ=255)
tCGCGTGGTTTATTAATGACGATTATATCTTAAAATTCAAAGACGAAATCCACCGGGGTATACTGCGGTTCAAAACTCGCGTCATGTACAATCTCATCGATGATGGCCAACGGA‑ACGCCACCCAATACATgatctttatg > 2:266515/1‑137 (MQ=255)
cgcgTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGC‑TCGCCACCCAATACTTTTTCTTTCg < 8:690736/138‑1 (MQ=255)
cgcgTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGC‑TCGCCACCCAATACTTTTTCTTTCGGc < 5:521308/140‑1 (MQ=255)
cgcgTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGC‑TCGCCACCCAATACTTTTTCTTTCGGc < 2:362804/140‑1 (MQ=255)
cgcgTGGTTTAATAATGACGATGATATCTTCATCTTCATATACCATATCCATCGGTATATCCTGAGGTTCAAAACGCGCTTCATCTTCAATCTCAGCGTTGATGGCCACCTGC‑TCGCCACCCAATACTTTTTCTTTCg < 8:597558/138‑1 (MQ=255)
cggggTTTATTAATTACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGTTATACAGCGGTTAAAAACGCGCTTCTTCATCAATATCAGCGTTGATTGCCACCTGC‑TAGCCACCCAATAATTTTTATTTAGGAtt > 4:873419/4‑140 (MQ=255)
ttattaATGACGATGATATCTTCATCTTCATAGTCGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGC‑TCGCCACCCAATACTTTTTCTTTCGGCTTATcaca < 3:63130/140‑1 (MQ=255)
ttattaATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGC‑TCGCCACCCAATACTTTTTCTTTCGGCTTATcaca < 5:966786/140‑1 (MQ=255)
tattaATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCGTCTTCTTCAATCTCAGCGTTGATGGCCACCTGC‑TCGCCCCCCAATACTTTTTCTTTCGGCTTATcacac > 1:747134/1‑140 (MQ=255)
aaTGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGC‑TCGCCACCCAATACTTTTTCTTTCGGCTTATCACACACtt < 1:626590/140‑1 (MQ=255)
aaTGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGC‑TCGCCACCCAATACTTTTTCTTTCGGCTTATCACACACtt < 6:667886/140‑1 (MQ=255)
aCGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGC‑TCGCCACCCAATACTTTTTCTTTCGGCTTATCACACACTTTGcc < 4:355940/140‑1 (MQ=255)
aCGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGC‑TCGCCACCCAATACTTTTTCTTTCGGCTTATCACACACTTTGcc > 6:491013/1‑140 (MQ=255)
aCGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGC‑TCGCCACCCAATACTTTTTCTTTCGGCTTATCACACACTTTGcc > 6:124531/1‑140 (MQ=255)
aCGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTAAGCGTTGAAGGCCACCTGC‑TCGCCACCCAATACTTATTCTTTCGGCTTATAACACACTTTGcc > 3:378524/1‑140 (MQ=255)
gatgatATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGC‑TCGCCACCCAATACTTTTTCTTTCGGCTTATCACACACATTGcc > 8:771210/1‑138 (MQ=255)
tgatATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGcttcttctt > 3:87338/1‑66 (MQ=255)
tgatATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGC‑TCGCCACCCAATACTTTTTCTTTCGGCTTATCACACACTTTGCCGTTa < 4:159489/140‑1 (MQ=255)
gatATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCTGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGC‑TCGCCACCCAATACTTTTTCTTTCGGCTTATCACACACTTTGCCGTTaa < 4:715927/140‑1 (MQ=255)
gaaatcttcatcttcATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGC‑TCGCCAACCAATACTTTTTCTTTCGGCTTATCACACACTTTGCCGTTaa < 4:75477/137‑1 (MQ=255)
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GACGATGGACGATGCCCGCACGCGGTACATCGGCAATGGGCGGATAGTAATGAAGCAACGCATTCAGTACCGTACCATCCGGGTTACCCGCGCCAGGATGTACCACCAGGTCGCGTGGTTTATTAATGACGATGATATCTTCATCTTCATAGACGATATCCAGCGGGATATCCTGCGGTTCAAAACGCGCTTCTTCTTCAATCTCAGCGTTGATGGCCACCTGC‑TCGCCACCCAATACTTTTTCTTTCGGCTTATCACACACTTTGCCGTTAACCAGC > NZ_CP022686/1370441‑1370718
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
