Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F2 I0 R1
|
117 |
5184.3 |
6857682 |
98.3% |
6741101 |
135.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,371,071 |
G→T |
17.9% |
D29Y (GAT→TAT) |
bamD → |
outer membrane protein assembly factor BamD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,371,071 | 0 | G | T | 17.9%
| 234.7
/ 7.0
| 125 | D29Y (GAT→TAT) | bamD | outer membrane protein assembly factor BamD |
| Reads supporting (aligned to +/- strand): ref base G (70/24); new base T (2/27); total (72/53) |
| Fisher's exact test for biased strand distribution p-value = 4.76e-11 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 127 total aligned reads displayed.
GGAGCAGGAACAGAGAATCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGAT > NZ_CP022686/1370934‑1371208
|
ggAGCAGGAACAGAGAATCTCCCGTATTACATTTTGAGGAAAGTCAAACAGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCTAAGGAAGAAGTACCTGAt > 6:599204/1‑140 (MQ=255)
ggAGCAGGAACAGAGAATCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGAt > 6:113014/1‑140 (MQ=255)
ggAGCAGGAACAGAGAATCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGAt > 4:617414/1‑140 (MQ=255)
aGCAGGAACAGAGAATCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGAt > 8:39144/1‑138 (MQ=255)
gCAGGAACAGAGAATCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATa > 2:354512/1‑138 (MQ=255)
gAAAAGAGAATCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCCTGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGc < 4:607832/140‑1 (MQ=255)
cAGAGAATCTCCCGTATAACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCATGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTTATAATCAGCCaa > 4:728161/1‑140 (MQ=255)
agagAATCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCAGGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGGTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCa < 8:10380/138‑1 (MQ=255)
aaTCTCCCGTATTACATTTTGAGTAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGaa < 3:648665/140‑1 (MQ=255)
aaTCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATg > 7:812281/1‑138 (MQ=255)
aaTCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGaa > 3:861623/1‑140 (MQ=255)
tctcCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAAt > 3:281833/1‑140 (MQ=255)
ctcCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAAtt > 5:40338/1‑140 (MQ=255)
ctcCCGTATTACATTTTGAGAAAAGTCAAAACGTCATGACGCGCATGAAATATCTGCTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGTGTTGCTCGGGGTCAATGGAAGAAGTAACGGATAATCCGCCAAATCAAAtt > 6:68418/1‑140 (MQ=255)
cccGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGGTGCGCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAAtt > 1:325438/1‑138 (MQ=255)
cccGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGAGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTTATAATCCGCCAAATGAAAtt > 8:295207/1‑138 (MQ=255)
cttATTACTTTTTGAGGAAAGTCAAAACTTATTGACGCGCATGAAATTTCTGGTGGCAGCCGCAAAACTAAGCCTTTTTTTGGCGGGTTGCGCGGGGTCAACGTAACAAGTACATTATAAACCGCCAAATTAAATTTa < 2:542090/136‑1 (MQ=255)
gTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTAc > 8:44528/1‑138 (MQ=255)
aTTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTTATAATCCGCCAAATTAAATTTAcgc < 2:785346/138‑1 (MQ=255)
aTTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTAcgc > 8:76348/1‑138 (MQ=255)
aTTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTAcgc > 1:328514/1‑138 (MQ=255)
aTTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTAcgc > 2:323105/1‑138 (MQ=255)
cATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTCCGCGACt > 2:147338/1‑138 (MQ=255)
aaTTTTTAGGAAAGTAAAACCGTCTTGACGCGCATGAAATATCTGGTGGCCGCCGCCACACTAATCCTGTTTTTGGCGGGTTGCTGGGGGTCAAAGGAAGAAGTACCTTATAATCCGCAAAATGAAATTTACGCGACt < 2:538817/137‑1 (MQ=255)
ttGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGATCGGGGTCAAAGGAAGAAGTAACTGATAATCCGCCAAATGAAATTTACGCGACTGcac > 2:805063/1‑138 (MQ=255)
tGAGGAAAGTCAAAACGTCATTAAGAGAATGAAATATCTGGTGGCAGCCGCCACACTAAGACTGTTTTTGGCGGGTTGCTCAGGGTCAAAGCAAGAAGTACCTGATAATCAGCCAAATGAAATTTACGCAAATGCaaaaa > 6:495446/1‑139 (MQ=255)
tGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCacaac > 5:651179/1‑140 (MQ=255)
gAGTAAAGTCAAATCGTCATGAGGCGAATCAAATATCGGGTGGCAGCCGCCACACTAAGCCTGTTTTGGGGGGGTTGCGCGGGGTCAACGTAATAAGTACCTTAAAATCCGCCAATTTAAATTTACGCGACTGCacaaca < 4:502396/140‑1 (MQ=255)
aGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCacaac > 2:55198/1‑138 (MQ=255)
aGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCAcaacaa > 5:19329/1‑140 (MQ=255)
gAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCAcaacaa > 1:350216/1‑138 (MQ=255)
aGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCt > 4:132229/1‑140 (MQ=255)
aGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCt > 3:603096/1‑140 (MQ=255)
acAAAACGACTTGACGCGAATTAAATATCGGGGGGCCGCCGCCACACTACGCTTGTTTTTGGCGGGGTGCGCGGGGTCAACGCAATAATTCCCTTAAAATCCCCAAAATTAAATTAACGCGACTGCACAACAAAAGCt < 8:316194/137‑1 (MQ=255)
aaaaCGTCTTGCCGCGCATCAAATATGGGTGGGCAGCCCCCACACTAAGCCTGTTTTGGGCGGGTTGCGGGGGGTCAAAGGAAGAAGTACCTTATAATCCGCCAATTTAAATTTACGCGACTGCACAACAAAAGCTGCAg < 6:393552/140‑1 (MQ=255)
aaaCGTCTTCCCGCGCATGAAATAGCTGGGGCCCCCCGCCAAAGTACGGGTGTTTTGGGGGGGTGGCGGGGGTAAAAAGCAAGACGTACCTGATACGCCGCCAAATTAAATTTCCGCGACTGCACAACAAAAGCTGCAgg < 4:150732/140‑1 (MQ=255)
tCATGACGCGCTTTAAATATCTGGGGGCAGCCCCCACACTACGCCTGTTTTTGGCGGTGTCCTCGGGGTCAAAGGAATAAGTACCTTATAACCCGCCAAATTAAATTAACGCGACTGCACAACAAAAGCTGCAGGACg < 8:427441/138‑1 (MQ=255)
tGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTa > 1:651539/1‑138 (MQ=255)
tGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTa > 2:470566/1‑138 (MQ=255)
tGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTa > 7:673846/1‑138 (MQ=255)
tGACGCGCATGAAATATCAGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCAGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTa > 7:669984/1‑138 (MQ=255)
gACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTaa > 1:62462/1‑138 (MQ=255)
cgcATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGTCGGGTTGCTCGGGGTAAAAGGAAGAAGTACCTGATAATCAGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGgag > 5:674954/1‑140 (MQ=255)
gcATTAATTATCTGGTGGCACCCGCCACACTATGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGTAATAAGTACATTATAATCCCCAAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGga < 1:250972/138‑1 (MQ=255)
gcATTAAATATCTGGGGGCCGCCGCCACACTACGCCTGTTTTTGGGGGGTGGCTCGGGGTCAACGGAAGAAGAACCTTATAATCCGCCAAATGAAATTTCCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGgaga < 4:846571/140‑1 (MQ=255)
gaattaaaTATCGGGGGGCAGCCGCCACACTATGCCTGTTTTGGGGGGGTTGCGGGGGGTCAACGGAAGAAGTACCTTATAATCCGCAAAATTAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGga < 2:845130/133‑1 (MQ=255)
cATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGAc > 5:125748/1‑140 (MQ=255)
cATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGAc > 5:534107/1‑140 (MQ=255)
aTGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGgaga > 1:272917/1‑138 (MQ=255)
tGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAACGCTGCAGGACGGTAACTGGAGAc > 7:741276/1‑138 (MQ=255)
gtggCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACg > 8:758852/1‑138 (MQ=255)
gtggCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCa > 5:173488/1‑140 (MQ=255)
tgCAGCCGCCACACTAAGCCTGTTTTCGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCa > 1:349277/2‑138 (MQ=255)
cgccgccACACTGAGCCTGTTTTTGGGGGGTTGCTCGGGGTCAAAGTAAGAAGTACCTGATAATCCGCCAAATTAAATTAACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTgg < 3:42539/139‑1 (MQ=255)
aGCCGCCACAATACGCCGGTTTTTGGGGGGTGGCTCGGGGCCAACGGAACACGAACCTTAAAACCCCCAAAATTAAATTAACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTgg < 5:289284/140‑1 (MQ=255)
gccgccACAATAAGCCTGTTTTTGGCGGGTTGCTGGGGGTCAAATCAATAAGAACCTCATAATCCCCCAAATTAAATTAACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTg < 2:161873/138‑1 (MQ=255)
gcccACACTATGGCGTTTTTGGGGGGGTTGCTGGGGATCAAAGTAAAAAGTACGTTAAAAGCCGCAAATTTAAATACACGCGCCTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATACCGCAACTGGAAg < 6:146921/138‑1 (MQ=255)
ccACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCg > 5:770875/1‑140 (MQ=255)
caacacTAAGCCTGTTTTTGGCGGGTTGCTCGGGTTCAAAGGAATAATTACTTGATAATCCCCCAAATTAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAg < 2:659285/136‑1 (MQ=255)
atAAGCCTTTTTTTGGCGGGTTGCTCGGGGACAAAGGAATAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGa < 6:195454/139‑1 (MQ=255)
tttttgtGGCGGGTTGCTGGGTTTCAATGGAATAATTACCTTAAAATCCCCAAAATTAAATTACCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACGGGCAATAACGCAACTGGAAGCGTTAGATAATc < 8:425675/136‑1 (MQ=255)
gTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCt > 3:694029/1‑140 (MQ=255)
gTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTAACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATACCGCAAATGGAAGCGTTAGATAATCGca > 3:759722/1‑139 (MQ=255)
tttttGTCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa > 5:467566/1‑140 (MQ=255)
tttttGGGGGGTGGCTCGGGGTCAATGGAAGAAGTACCTGAAAATCCCCCAAATTAAATTACCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa < 3:391045/140‑1 (MQ=255)
tttttGGCGGTTTGGTCGGGGTCAAAGGATTAAGTCCCTCATAAGCCGCAAAATTAAATTACCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa < 5:264531/140‑1 (MQ=255)
tttttGGCGGGTTGCTCGGGGTCAAAGTAAGAAGTACCTTATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGc < 8:340514/138‑1 (MQ=255)
tttttGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa > 6:829467/1‑140 (MQ=255)
tttttGGCGGGGTGCTCGGGTTCAATGTAATAATAAAATTATAATCCGCAAAATTAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGc < 8:373292/138‑1 (MQ=255)
tttttGGCGGGGTGCGCGGGGTCAACCGAAGACGTACCTTAAAACCCGCCAAATTAACTTTCCGCGACTGCACAACAAAAGCGGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGc < 8:497907/138‑1 (MQ=255)
tttGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa > 1:461099/1‑138 (MQ=255)
tttGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa > 2:810424/1‑138 (MQ=255)
tttGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCAGCCAAATGAAATTTACGCGACGGCACAACAAAAGCTGCAGGACTTTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCACTa > 8:783579/1‑138 (MQ=255)
tttGGCGGGTTGCTCGGGGTAAAAGTAATAAGTACCTGATAATCCGCAAAATGAAATTAACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa < 2:272917/138‑1 (MQ=255)
tGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCg > 5:327275/1‑140 (MQ=255)
ggCGGGTTGCTGGGGGTCAAAGGAAGAAGTACCTTATATACCGCCAAATGAAATTTAAGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATcc < 1:819006/138‑1 (MQ=255)
gggggTGGCGCGGGGTCAACGCAACAAGAACCTTAAAATCCGCAAAATTAAATTTCCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGtt < 3:853142/138‑1 (MQ=255)
gTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTAAGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCGATCCGTTTGGt > 5:616104/1‑140 (MQ=255)
ttggggggggTCAATGGAACAAGACCCTGAAAACCCGCAAAATTAATTTACCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTgg < 7:44528/132‑1 (MQ=255)
ttGCTCGGGTTCAAAGGAAGATTTACCTGATAATCCGCCAATTTAAATTTCCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTc < 3:525044/140‑1 (MQ=255)
tGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATACTCGCTATCCGTTTGGt > 7:74473/1‑138 (MQ=255)
gcGGGGTCAATGTAATAAGATCCTTATAAACCGCCAAATGAAAATAACGCGACTGCACAACAAAAGCGGCATGACGGTAACTGGAGACAGGCTATAACGCATCTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCg < 8:463172/137‑1 (MQ=255)
ggggTCAACGCAATAAGAACCTGATAAACCGCAAAATTAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACTCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTAtt < 4:366583/140‑1 (MQ=255)
gggTCAAAGGAAGAATAACCTTAAAACCCGCAAAATGAAATTTCCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTAt < 1:631171/138‑1 (MQ=255)
ggTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCg > 5:314414/1‑140 (MQ=255)
aacggAAGAAGTACCTGATAATCCGCAAAATTAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCgca < 2:651539/135‑1 (MQ=255)
gtaagaagTACCTTATAATCCGCAAAATTAAATTAACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAgg < 3:617414/138‑1 (MQ=255)
gaagacGAACCTTATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGt < 6:507070/140‑1 (MQ=255)
agaagTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa > 4:364528/1‑111 (MQ=255)
agaagTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa < 3:364528/111‑1 (MQ=255)
gaagTACCTGATAATCCGCCAAATGAAATTTACGCGACTGAACAACAAAAGCTGCAGGACGATAACTCGAGACAGGCAATAACGCACCTGGAAGCGTTAGATAATCCCTATCAGTTTGCTCAGTATTCGCAGCAGGTgaa > 3:541618/1‑138 (MQ=255)
aagTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGc > 2:626949/1‑138 (MQ=255)
aagTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGc > 8:241233/1‑138 (MQ=255)
aCCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCt > 2:36623/1‑138 (MQ=255)
cTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGAt > 6:46235/1‑140 (MQ=255)
cTGATAAGACGCAAAATGAAATTAACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGAt < 4:464177/140‑1 (MQ=255)
cTGAAAAGCCGCCAAATTAAATATACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGAt < 5:415664/140‑1 (MQ=255)
tGATAATCCCCAAAATTAAATTAACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGa < 7:427429/138‑1 (MQ=255)
gATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGAt > 2:569898/1‑138 (MQ=255)
gATAAACCTCCAAATGAAAATTACGCGCCTGCACAACAAAAGCTGCACGACGGTAACTGGAGCCAGGCAATAACGCAACTGGAAGCGATAGATAATCTCTATCCGTTTGCTCCGTATTCTCAGCAGGTGCAGcagcag > 1:432633/1‑133 (MQ=255)
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GGAGCAGGAACAGAGAATCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGAT > NZ_CP022686/1370934‑1371208
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
