Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F2 I0 R1
|
252 |
7301.5 |
9636800 |
98.5% |
9492248 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,371,071 |
G→T |
12.6% |
D29Y (GAT→TAT) |
bamD → |
outer membrane protein assembly factor BamD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,371,071 | 0 | G | T | 12.6%
| 363.5
/ 4.3
| 169 | D29Y (GAT→TAT) | bamD | outer membrane protein assembly factor BamD |
| Reads supporting (aligned to +/- strand): ref base G (102/32); new base T (2/28); total (104/65) |
| Fisher's exact test for biased strand distribution p-value = 9.13e-13 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 171 total aligned reads displayed.
GAGCAGGAACAGAGAATCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATC > NZ_CP022686/1370935‑1371209
|
gAGCAGGAACAGAGAATCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATa > 7:1079547/1‑140 (MQ=255)
gAGCAGGAACAGAGAATCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATa > 5:893542/1‑140 (MQ=255)
gAGCAGGAACAGAGAATCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATa > 3:110183/1‑140 (MQ=255)
gAGCAGGAACAGAGAATCTCCCGTATTACATTTTGAGGAAAGTCAAAACGGCATGCCGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATa > 8:1072683/1‑140 (MQ=255)
aGCAGGAACAGAGAATCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGAt > 1:190810/1‑138 (MQ=255)
aGCAGGAACAGAGAATCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGAt > 1:624673/1‑138 (MQ=255)
aGCAGGAACAGAGAATCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGGCAAAGGAAGAAGTACCTGATaa < 5:308166/140‑1 (MQ=255)
ggAACAGAGAATCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATc < 2:1154244/138‑1 (MQ=255)
gAACAGAGAATCTCCCGTATTACATTTTGTGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGc > 6:552170/1‑140 (MQ=255)
gAACAGAGAATCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGc > 7:770866/1‑140 (MQ=255)
agaATCTCCCGTATTACATGTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATCTCTGGGGGCAGCCGCCACACTAAGACTGTTTTTGGCGGGTTGCTCGGGGTCAACGGAAGAAGTACCTGATAATCCGCCAAATg < 3:701673/140‑1 (MQ=255)
aaTCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGCCGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATg < 1:321689/138‑1 (MQ=255)
aaTCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATg > 1:944330/1‑138 (MQ=255)
tctcCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGTGGTCAAAGGAAGAAGTACCTTATAATCCGCAAAATGAAAt > 6:963026/1‑140 (MQ=255)
tctcCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAAt > 3:1023923/1‑140 (MQ=255)
ctcCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAAtt > 5:510522/1‑140 (MQ=255)
cccGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGATTTTGGCGGGTAGCTCGGGGTCAAAGGATGAAGTACCTGATAATCCGCCAAATGAAATTT‑a > 8:1070619/1‑140 (MQ=255)
ccGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑Ac > 3:223682/1‑140 (MQ=255)
gTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑Ac > 2:114548/1‑138 (MQ=255)
cATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGc > 3:84267/1‑140 (MQ=255)
ttttGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGcac > 8:625783/1‑140 (MQ=255)
tGAGGAATGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCGGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCacaac > 6:61199/1‑140 (MQ=255)
tGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCacaac > 5:21274/1‑140 (MQ=255)
tGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCacaac > 3:1033140/1‑140 (MQ=255)
tGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCAGATAATCCGCCAAATGAAATTT‑ACGCGACTGCacaac > 8:431794/1‑140 (MQ=255)
aGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCAcaacaa > 8:782471/1‑140 (MQ=255)
gtaaaGTCAAACAGTATTGACGCGCATTTAATATCTGGGGGCAGCCGCAACAATATGCTTTTTTTGGGCGGTTTGCTGGGGGTCAAAGCAAGAAGTACCTGATAATCCGCCAAATTAAATTT‑ACGCGACTGCacaaca < 2:651676/136‑1 (MQ=255)
gtaaaGTAAAAACGTAATGACGCTCATTAAATATCTGGTGGCCGCCGCCAAAATAAGCCTGTTTTTGGCGGGTTGCTCGGGGTAAAAGGAAGAAGTACCTGATAATCCGCAAAATGAATTTT‑ACGCGACTGCACAACaaa < 6:208526/138‑1 (MQ=255)
gAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCAcaacaa > 2:38883/1‑138 (MQ=255)
aaGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGc > 7:23119/1‑140 (MQ=255)
taaaaaCGTCATGCCGCGCATGAAATATCTGGTGGCAGCCGCCACACTATGACTGTTTTTGGCGGTTTGCTCGGGGTCAAAGGAAGAAGTACCTTATAATCCCCCAAATGAAATTA‑ACGCGACTGCACAACAAAAGCTGc < 4:863842/138‑1 (MQ=255)
cATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTa > 3:932891/1‑140 (MQ=255)
aTGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTaa > 7:185382/1‑140 (MQ=255)
aTGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTaa > 4:140023/1‑140 (MQ=255)
aTGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCAGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTaa > 5:1083957/1‑140 (MQ=255)
aTGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGACAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAAGTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTaa > 7:343362/1‑140 (MQ=255)
gACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTaa > 1:419457/1‑138 (MQ=255)
cgcATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGgag > 7:174796/1‑140 (MQ=255)
tttaaaTATCTGGTGGCAGCCGCCACAATATGCCTGTTTTTGGGGGTTTGCTGGGGTTCAAAGTAATAAGTACCTTATAATCCGCAAAATTAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACa < 7:458489/137‑1 (MQ=255)
attaaaTATCGGGTGGACGCCGCCACACTACGCCGGTTTTGGGCGGGTGGCTGGGGGCAAAAGGAATATTAACCTAATAA‑CCCCCAAATTTAATTTCACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGgaga < 1:1097905/135‑1 (MQ=255)
tGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGAc > 1:153263/1‑138 (MQ=255)
aaaTTTCTGGTGGCAGCCTCCACACTACGCCTTTTTTGGGCGGTTTGCTGGGGGTAAAAGTAACATTTACCTTATAAACCGAAAATTTAATTTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGc < 3:1206447/140‑1 (MQ=255)
tggtggCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCTACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACg > 4:445825/1‑140 (MQ=255)
tggtggCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACg > 5:716793/1‑140 (MQ=255)
gtggCAGCCGCCACACTAAGCCTGTTTTTGGCGGCTAGCTCGGGGTCAAAGGAAGAAGTACCGGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACACCAAAAGCTGCAGGACGGTAACGGGAGACAGGCAATAACGCa > 3:896814/1‑140 (MQ=255)
ggCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCa > 1:746183/1‑138 (MQ=255)
cAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCGCGGGGTCAAAGTAAGAATTACCTTATAATCCGCAAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTg < 6:689478/140‑1 (MQ=255)
cgctgccACACTATGCGTGTTTTGGGGGGGTTGCTCGGGCACAAAGTATCACGTACTTGATAATCCCCAAAATTAAATTA‑CCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTgg < 5:155553/136‑1 (MQ=255)
cgccgccACACTAAGCGTGTTTTTGGCGGGTGGGGGGGGCTAAATGTAATAATTACCTTATAATCCGCAAAATTAAATTT‑CCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTgg < 5:130255/139‑1 (MQ=255)
cgccgccACACTAAGCCTGTTTTTGGCGGGTGTCTCGGGGTCAAAGGAACAAGTACCTGATAATCCGCCAAATTAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACt < 2:698500/137‑1 (MQ=255)
cgccccaacacTACGCTTTTTTTTGGGGGTGTGCGGGGGGTAAAAGCAAGAAGTCCCTGATAACCCCCCAATTGAAATTA‑CCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTgg < 5:510987/133‑1 (MQ=255)
gccgccACACTAAGCCTTTTTTTGTCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGAAAATCCCCCAAATGAAATTT‑ACCCGACTGCACAAAAAAAGCTGCAGTACGGTAACTGGAGACAGGCAATAACGCAACAGGa > 5:919082/1‑140 (MQ=255)
gccgccACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGa > 3:549433/1‑140 (MQ=255)
cccgccACAACATGCCGTTTTTTGGCGGGTTGAGGGGGGTAAAAGCATCATGTACCTTTTACTCCGCCAATTTAAATTT‑CCCCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGa < 4:443746/139‑1 (MQ=255)
cgccACACTAAGCCTGTTTTTGGCGGGTTGCGCGGGGTAAAAGGAAGAAGTCCCTCATAAACCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGa < 2:28540/138‑1 (MQ=255)
ccaaaatAAGCCTGTTTTGGGCGGGGTGCTCGGGGACAATGTAATAAGACCATTATAACCCGCAAAATTAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAg < 1:981622/132‑1 (MQ=255)
ccACAATAAGCCTGTTTTTGGCGGGTGGCGCGGGGTCAAAGGATGAATAACCTTTTAATCCGCCAATTAAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAg < 2:549199/138‑1 (MQ=255)
tAACCCTGTTTTTGGCGGGTTGCTCGGGTTCAAAGCAAGAATTACCTGATAATCCCCCAAATTAAATTT‑CCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGAt < 6:214317/140‑1 (MQ=255)
aaaGCTTTTTTTGGGCGGTGTGCGCGGGGAAAAAGCAACACCTACCTTATAAACCCCAAAATCAAATAA‑CCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAg < 1:174562/137‑1 (MQ=255)
aGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACCACAACAGCTGCAGGACGGTACCTGGAGCCAGGCAATAACGCAACTGGAAGCGTTAGATaa > 6:93198/1‑140 (MQ=255)
aGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATaa > 5:1164118/1‑140 (MQ=255)
aGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATaa > 3:294266/1‑140 (MQ=255)
aGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATaa > 4:84679/1‑140 (MQ=255)
ggTTTTTGGCGGGTGGCGCGGGGTCAAAGGAATAAGTCCATGAAAACCCGCAAAATTAAATTA‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATc < 2:513952/137‑1 (MQ=255)
gTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAAc > 4:991021/1‑114 (MQ=255)
gTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAAc < 3:991021/114‑1 (MQ=255)
tttttGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCATCTGGAAGCGTTAGATAATCGCtt > 3:620779/1‑139 (MQ=255)
tttttGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa > 3:907180/1‑140 (MQ=255)
tttttGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa > 6:1135460/1‑140 (MQ=255)
tttttGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa > 4:16516/1‑140 (MQ=255)
tttGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATACTCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa > 2:925553/1‑138 (MQ=255)
gCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGtt > 3:140115/1‑140 (MQ=255)
cGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTAGCCGt > 2:963738/1‑138 (MQ=255)
gTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGt > 6:1032923/1‑140 (MQ=255)
ttGCTGGGGTTCAAAGTAAGAAGTACCTTATAAACCGCAAAATTAATTTA‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTc < 8:23119/140‑1 (MQ=255)
tggcgcGGGGTCAAAGTAACAAGTACCTTATAAGCCCCCAAATGAAATTT‑CCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTc < 5:994402/135‑1 (MQ=255)
ggTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCg > 4:405928/1‑140 (MQ=255)
ggTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCg > 5:481756/1‑140 (MQ=255)
ggTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGACCGTATTCg > 7:437131/1‑140 (MQ=255)
ctCAAAGGAAGAAGTAACTTATAATCCGCCAAATCAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACATGCAATAACGCAACTGGAAGCGTTAGATAATCTCTATCCGTTGGCTACCTATTCgc > 4:66999/2‑140 (MQ=255)
taGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGATGAAGGACGGTAACTGGAGACAGGCAATATCGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCgcagca > 8:820217/2‑140 (MQ=255)
aaGGAAGAAGTACCTGATAATCCGCCAAATGCAATTT‑ACGCGCCTGCACAACAAAAGCTGCCGGACGGTAACTGGAGCCAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTATGGTCCGTATTCgcagca > 4:80431/1‑140 (MQ=255)
gaataaGTACGTTATAATCCGCCAAATGAATTTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGt < 8:955939/140‑1 (MQ=255)
attctttACCTGAAAACCCCCAAAATGAAATTT‑CCGCGACTGCCCAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATCACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTg < 7:1052979/134‑1 (MQ=255)
aagaagTACCTCAAAATCCCAAAAATGAAATAT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAgg < 2:580984/138‑1 (MQ=255)
agaagTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGc > 6:908276/1‑140 (MQ=255)
agaagTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGc > 7:279912/1‑140 (MQ=255)
agaagTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGc > 6:1040294/1‑140 (MQ=255)
agaagTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGc > 8:837387/1‑140 (MQ=255)
gaagTACCTGATAATCCGCCAAATTAAATTT‑ACGCGACTGCACAACAAAAGCTACAGGACGGTAACAGGAGACAGGCAATAACGCAACTGGAAGCTATAGATAATCGCTATCCGGTTGGTCAGTATTCGCAGCATGTGCa > 6:574209/1‑140 (MQ=255)
aagTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAg > 6:662322/1‑140 (MQ=255)
tgtcccTTATAAACCCCAAAATTAAATTA‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGc < 5:582412/136‑1 (MQ=255)
agTACCTTATAATCCGCAAATTTAAATTT‑CCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGc < 3:461887/140‑1 (MQ=255)
agTACCTTATAACCCCCAAAATAAAATTA‑CCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGc < 7:1001016/140‑1 (MQ=255)
ccTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGa > 3:576187/1‑140 (MQ=255)
cTGATTATCCGCCAAATTAAATTT‑ACGCGACTGCACAACAACAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCATCTGGATGCGTTAGATAATCGCTATCCGTTTGTTCCGTATTCGCAGCAGGTGCAGCTGGAt < 8:977954/140‑1 (MQ=255)
cTGATAATCCGCAAAATTAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTgg < 1:1028460/138‑1 (MQ=255)
tGATAATCCGCAAAATGAAATGT‑CCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGAtc < 8:861806/140‑1 (MQ=255)
gATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTgg < 2:1064404/136‑1 (MQ=255)
gATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTgg > 1:1064404/1‑136 (MQ=255)
|
GAGCAGGAACAGAGAATCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAATGAAATTT‑ACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATC > NZ_CP022686/1370935‑1371209
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
