Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F2 I0 R1
|
233 |
6461.8 |
9239822 |
98.3% |
9082745 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,860,070 |
C→A |
18.7% |
E119* (GAA→TAA) |
CIW80_RS09255 ← |
YtfJ family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,860,070 | 0 | C | A | 18.7%
| 358.1
/ 9.7
| 172 | E119* (GAA→TAA) | CIW80_RS09255 | YtfJ family protein |
| Reads supporting (aligned to +/- strand): ref base C (2/120); new base A (31/2); total (49/123) |
| Fisher's exact test for biased strand distribution p-value = 6.98e-28 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 172 total aligned reads displayed.
TTGCCCACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGT‑GGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCA > NZ_CP022686/1859935‑1860206
|
ccACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAAATGCGCCCACGGATAGCGGCGA‑TTATTTTTTTATA‑tttttg > 2:404213/1‑138 (MQ=255)
aCTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTATTTTTTTAGA‑tttttaca > 7:289004/1‑136 (MQ=255)
tGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCCGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCTGCGT‑TGTTTTTTTTAGA‑TTTTGACAAc > 8:858600/1‑140 (MQ=255)
tGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTAGA‑TTTTTCCAAc > 4:552360/1‑140 (MQ=255)
gAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACg < 1:1063402/140‑1 (MQ=255)
gAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACg < 3:529523/140‑1 (MQ=255)
gAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTTTA‑tttttagaa > 5:385902/1‑133 (MQ=255)
aaTTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATAGCGCCCACGGATAGCGGCGT‑TTTATTTTTTAGA‑tttttcaaaa > 6:988519/1‑132 (MQ=255)
ctcccGGCGTTTTTAAATACCATTATGGTTGATCTCTTATCCTGCATTTGCCAGGCAATGCGTGCCTGCCCTTTGCCGTCAATCACGAATTGCGCCCACTCATAGGGGCGG‑TTTTTTTTTTCGA‑TTTTGCCAACGACaaa < 8:683336/138‑1 (MQ=255)
cGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACaaa < 4:227818/140‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATa < 5:236599/138‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGc < 3:1120978/140‑1 (MQ=255)
ggCTTTAATCAATACCAGAATGGGTGAACTCTGCTCCGGCAAGTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATa < 6:12327/138‑1 (MQ=255)
gCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTTGA‑TTTTTGCAACGACaaaaaaaac > 2:1191780/1‑135 (MQ=255)
cTTTTTTCTATACCAGACTGCTTGATCTCTGCTCCGGAATTTGCCAGGCAACGCGTCCCAGACCATTTCCGTCAATCATGAAGTGCGGCCACGTATCGAGGCGT‑TTATTAGTGTCGA‑TTTTGCCACCGCGAAAATAGCCa < 4:835985/140‑1 (MQ=255)
cTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGc < 6:813882/138‑1 (MQ=255)
cTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCa < 1:459839/140‑1 (MQ=255)
aTTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCTGCGT‑TTTTTTTTTTAGA‑ATTTTACAACCACCAAAAAAGCAGTaa > 3:725516/1‑139 (MQ=255)
ttttaTACAAGATTGGTTGAACTCTGCTCCTGCTTTAGGCAGGGTACGGGGCTCTGTCGTTTGGGGTCAATTTCGTATTGCGGCCAGGGTTAGCGGGGT‑TTATTTTTTTGGA‑TTTTGCCAACGACAAAATTGCGAGTAcc < 2:583331/136‑1 (MQ=255)
ttCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTa < 5:662873/138‑1 (MQ=255)
tACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTAGA‑TTTTTGCAACGCCAAAATATACAGTAACAAAGa > 7:327970/1‑140 (MQ=255)
tACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGAGGAGT‑GTTTTTTTTTAGA‑TTTTTGCAAAGACAATATAGCCAGATACAAAGa > 3:613432/1‑140 (MQ=255)
aCCAGAATGGTTGAACTATGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTTCCGTCATTAACGAATTGCGCCCAAGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAATTAGCCAGTACCAAAGAt < 3:952283/140‑1 (MQ=255)
cAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTGGA‑ATTTTGCAACCAAAAAATACCCAGTAACAAAAATgg > 8:776793/1‑140 (MQ=255)
gAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGCCCATTGACGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTTTTTTTTTAGA‑TTTTTGAAAACACAAAATAGCCACTAACaaatcaagga > 4:806901/1‑133 (MQ=255)
gggtGAACTCTGCTCCGGCAATTGCCAGGAAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGG‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGcatcat < 8:544767/137‑1 (MQ=255)
ggTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCTTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGcatcat < 7:1010589/140‑1 (MQ=255)
ggTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGcatc < 5:596025/138‑1 (MQ=255)
gTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TGTTTTTTTTTGA‑ATTTTTCAACGCCAAAATAGACACTACCAAAGATTGctgtcgg > 1:883098/1‑134 (MQ=255)
gTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTTTA‑ATTTTTCAACCACAAAAAATCAAGTAACAAAAATTGcctcaaa > 7:776122/1‑138 (MQ=255)
tttatcgctGCTCCGGCAATTGCCCGGACACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATATCGTCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 8:366782/133‑1 (MQ=255)
ttGTACTCTGATGCGGCTATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGGACACGGATAGCGGCTT‑TTATTTTTTTCGA‑TTTTGCCAACGACATAATAGCCAGTACCAAAGATGGCATCATCg < 2:93126/140‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCCACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 4:662551/140‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACTCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGcatcat < 6:457127/138‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGcatcat < 5:29655/138‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 3:440864/140‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 1:251651/140‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 7:99178/140‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTCCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 2:945659/140‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATAGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 7:962978/140‑1 (MQ=255)
gAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGTATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgt < 2:172559/140‑1 (MQ=255)
gAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgt < 1:1006838/140‑1 (MQ=255)
gAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgt < 7:1055238/140‑1 (MQ=255)
gAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGCCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 6:673332/138‑1 (MQ=255)
ctctGCTCCGGCTATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 7:1005100/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCTGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgtg < 5:928444/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCCCGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCACAGATGGCATCATCGgtg < 6:573992/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgtg < 5:990246/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgtg < 6:290317/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 4:379320/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 7:902232/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 4:862041/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 1:1191780/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 3:916185/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GGTTTTTTTTTTT‑TTTTTGCAACCGCAAAATATCCCGTTACAAAAAAGGGCGAATCGGTGtt > 1:988067/1‑140 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GGTTTTTTTTAGT‑TTTTGCACACGACAAAAAAAACAGTGCCAAAAATGGGGTGATAGGTGtt > 7:33672/1‑140 (MQ=255)
cgctGCTCCGGCAATTGCCCGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 2:498492/138‑1 (MQ=255)
ctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCTTTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAATGATGGCATCATCGGTGtt < 6:889530/138‑1 (MQ=255)
ctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTca < 7:833752/140‑1 (MQ=255)
ctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTca < 1:379669/140‑1 (MQ=255)
ctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TGTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTca < 8:613157/140‑1 (MQ=255)
ctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGAACATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTca < 7:508610/140‑1 (MQ=255)
atGCTCCGGCAATTGCCAGGCAACTCGGCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGTCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTca < 2:741748/139‑1 (MQ=255)
gCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGGTTTTTTTTTGGT‑TTTTGGCAAC‑ACCAAAAAGCCCGTGACCAAGATGGCTTGATCGGTGGTgaca > 3:360573/1‑140 (MQ=255)
cTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTcac < 6:209057/138‑1 (MQ=255)
tCCGGCAATTTCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTcaca < 5:41222/138‑1 (MQ=255)
gCATTTGCCAGGCAACGGGTCCCAGACCATTGCCGTCATTAACGAATTGTGCCGACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCTGTACCAAAGATGGCATCATCGGTGTTCACAATAg < 5:27816/138‑1 (MQ=255)
cAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATACCGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTGCACAATAgt‑gg < 3:877123/140‑1 (MQ=255)
cAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAgt < 5:306777/138‑1 (MQ=255)
aTTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTAGATTTTTGGCAAC‑ACAAAATATGCATGAACAAAAATCGCAAGATAGGTGTTGAAAAAAgt‑gggg > 2:536943/1‑138 (MQ=255)
cAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGT‑GGTGGGCTGaa < 5:541129/138‑1 (MQ=255)
gcgTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGG‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGT‑GGTGGGCTGAAAACGAt < 1:661475/140‑1 (MQ=255)
cgTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGT‑GGTGGGCTGAAAACGATc < 8:31743/140‑1 (MQ=255)
cgTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGT‑GGTGGGCTGAAAACGATc < 2:804111/140‑1 (MQ=255)
gACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGT‑GGTGGGCTGAAAACGATCCTGCGaa < 3:168689/140‑1 (MQ=255)
tGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGT‑GGTGGGCTGAAAACGATCCTGCGAAAAGttt < 3:317868/140‑1 (MQ=255)
tGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTAGA‑TTTTTGCAACCACAAAATATCCACTGACAAATATTGCAACATCGGTGGTAACAAAATTGGGTGGGGTG‑AAACGATCCAGGGGAAAGatt > 2:1016159/1‑140 (MQ=255)
tGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTATTTTTTTGTA‑TTTTTGAAACGACAAAAAATACACTAACAAAAATTGCAAAATAGGGGTTGACAAAAGT‑TGTGGGCGTAAAAAGATAAGGCGAAAAGttt > 4:1077064/1‑140 (MQ=255)
tCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTTATTTTTTAGA‑ATTTTTCAACCACAAAAAACACCGTACAAAAGAATGCAACAAAGGTGTTGAACAAATT‑TGTGGGCGGAAAACGATCCGGCCGAAAGTTTTCCGc > 2:116702/1‑140 (MQ=255)
aaTAACGATTTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTAGA‑TTTTTGCCACGACAAAATAGCCCCTACCAAAAATGGGCTCATCGGTGTTCACAAAATT‑TGTGGGGTGCAAAACCTGCAGGGAAAAGttttgcgcgt > 2:239438/1‑133 (MQ=255)
aaTAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTAGA‑TTTTTGCAACCCCAAAAAATACAGTACCAAAAAATGGATCAAAGGGGTTAAAAAAAAT‑TGTGGGCTGAAAAACAAACAGCGAAAAAttttgcgc > 6:509040/1‑133 (MQ=255)
aaTAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTAGA‑TTTTGGGCAAGCCACAATAACCAGAAACAAAAAATGCATCAAGGTTGTTGACAAAAAT‑GGTTGGCGGAAAAACATCATGCCAAAAAttataccc > 6:1123065/1‑132 (MQ=255)
aCGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGT‑GGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAAc < 2:305327/140‑1 (MQ=255)
ctaaTTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTAGA‑TTTTTCACACGACAAAAAATACAGTAACAAATAATGCATAATCGGATGTAACAAAAGT‑GGTTGTCTGAAAAAGATACGGCTAAAAGTTTGCACCTTCaaaa > 2:1094936/3‑138 (MQ=255)
gAATTGCGCCCACGGATTGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGT‑GGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAAc < 6:385902/138‑1 (MQ=255)
gAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGT‑GGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAAc < 6:670080/138‑1 (MQ=255)
aTTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGT‑GGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCg < 5:1033943/138‑1 (MQ=255)
aTTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGT‑GGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCg < 6:1108275/138‑1 (MQ=255)
aTTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGT‑GGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCt < 7:887388/140‑1 (MQ=255)
aTTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGT‑GGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCt < 3:105567/140‑1 (MQ=255)
cgcCCACGGATAGCGGCGT‑GTTTTTTTTTGGA‑TTTTTGGACCGCCAAAAAAGCCACTACCAAAGATGGGATAAACGGTGTTGACAAAATT‑GGGGGGGTGAAAACGATCCGGCGCAAATTTTGGCGCATGAAccccgttta > 4:368226/1‑133 (MQ=255)
gcCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGT‑GGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTtta < 6:218290/138‑1 (MQ=255)
ccACTGATTGCGGCGT‑TTATTTTTTTAGA‑TTTTGCACACTACAAAATAGCGTGTACAAACGATGGGATCTTCGGTGTTCACAATAGT‑GGTCGTGTGATTACGATCCTGCGAATAGTTTGCTGCTTCTACCGCTtttatta < 8:907177/140‑1 (MQ=255)
gATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGT‑GGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGt < 8:207008/140‑1 (MQ=255)
aTAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGT‑GGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAg < 5:858214/138‑1 (MQ=255)
ttATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGT‑GGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCttttt < 1:223387/140‑1 (MQ=255)
tttttCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGT‑GGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCg < 2:599465/140‑1 (MQ=255)
ttttCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGT‑GGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGc < 1:58629/140‑1 (MQ=255)
tttCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCCTCGGTGTTCACAATAGT‑GGGGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCa < 2:920106/140‑1 (MQ=255)
tttAGA‑TTTTGCCAACGACAAAATAGCCAGTACCACATATGGCATCCTCGGTGTGCACAATAGT‑TGTGGGCTGAACACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCa < 4:845812/140‑1 (MQ=255)
|
TTGCCCACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGT‑GGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCA > NZ_CP022686/1859935‑1860206
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
