Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F2 I0 R1
|
233 |
6461.8 |
9239822 |
98.3% |
9082745 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,461,202 |
T→A |
17.0% |
intergenic (‑11/+24) |
CIW80_RS17335 ← / ← CIW80_RS17340 |
tRNA‑Leu/tRNA‑Leu |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,461,202 | 0 | T | A | 17.0%
| 201.9
/ 14.4
| 136 | intergenic (‑11/+24) | CIW80_RS17335/CIW80_RS17340 | tRNA‑Leu/tRNA‑Leu |
| Reads supporting (aligned to +/- strand): ref base T (48/62); new base A (2/22); total (51/85) |
| Fisher's exact test for biased strand distribution p-value = 8.95e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 137 total aligned reads displayed.
AAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTT > NZ_CP022686/3461066‑3461339
|
aaaaaTCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCAGAGTCTACTTaat > 8:1024580/1‑138 (MQ=255)
ggAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGat > 7:1083445/1‑140 (MQ=255)
caagaaACACGAAAGGAAGTAAAGATATTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGata < 2:305518/139‑1 (MQ=255)
aaaCAAGAAAGTAATTAAACATAATTGTGGCTTGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGc < 7:181396/140‑1 (MQ=18)
aaaagaaagTAAATAAAATTGGTGAGAGGGGGGGTACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGtt < 1:836424/139‑1 (MQ=18)
aaaaGTAAGTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGtt < 3:849110/139‑1 (MQ=255)
aaaGCAAGTAAAGATAATTGGTGCCAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGttt < 2:832685/140‑1 (MQ=255)
accaaaaaGAAACTGGGGGCGAGGGGGGGCACGTCAACCCCCACGTCCGTAAGACCACTAACACCTGAAGCTAGCGCTTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTg < 8:245769/135‑1 (MQ=18)
attacaGATAATTTGGGCGCGGGGGGGGCACTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTg < 5:927866/133‑1 (MQ=18)
taTAATTGGGGCGAGGGGGGGTACTAGAACCCCCACGGCCGTAAGAACACTAACACCTGAAGCTATCGCGTCTACCAATTCCGCCACCTT‑CTCACATTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAggggg < 4:867160/139‑1 (MQ=21)
caTAATTGGCGCGGGGGGGGCCACTACAACCCCCACGTCCGTAAGAACCCTACCACCTGAAGCTAGCGCGTCTACCCATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAggg < 5:219178/137‑1 (MQ=21)
atactgggTGCCTGGGGGGGGCCTCCCCCCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAgggggg < 2:198296/134‑1 (MQ=21)
aTAATTGGTGCGAGGGGGGGGACTTCAACCCCCACGTCCGTAAGAACACTCACACCTGAAGCTACCGCGTCTACCAATTCCGCCACCTT‑CGCACAGGCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAgggggg < 2:852247/140‑1 (MQ=255)
aaTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCGGACTTTTTTTGATATCGCCTAGTTTGGTGCGAgggggggg > 2:960465/1‑140 (MQ=255)
gtcgcggggtgtgACTTGAACGCCCACGTCCGTTTGACCCCTAACCCCTGAAGCTAGCGCGTCTACCAATTCCGCCACCGT‑CGCACAGTCATCTTACTTTTTTTTTTCTCGACTCGTTTGGTGCGAGGGGGGGGACtt < 5:58611/133‑1 (MQ=18)
ggcgcGGGGGGGGACTTCAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGGCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGa < 4:762221/139‑1 (MQ=255)
ggcccgggggggtACTTGAACCCCCACGTCCGTAATAACACAAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCAT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGa < 1:934570/135‑1 (MQ=25)
gctcgggggtgtACTTTCACCCCCACGTCCTTAATAACACAAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTTATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGaa < 2:48073/136‑1 (MQ=21)
cGAGGGGGGGGACTTGCACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCCCCTT‑CGCCCAGTCCTCGTACTTTGTTTGCTATCGCCGGGGTTGGTGGGAGGGGGGGGCCTGGAAc > 3:354638/1‑140 (MQ=14)
ggggggggCAATCAACCCCCACGACCGTAACAAAAATAAACCCTGATGCTCGCGCGTATACCAATTCCGCCACCTC‑CGCACAGGCATCTTACTTTTTTTGATCTCGCCTCTTTTGGTGCGTGGGGGGGGACTTGAAcccc < 8:687469/140‑1 (MQ=19)
ggACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATAGCCGCGTTTGGTGCGAGGGGGGGGACTGGCACCCCCACg > 5:553378/1‑138 (MQ=255)
ggACTTCACCCCCCCCGGCCGAAAGACCCCAAACCCCTGACGCTAGCGCGTCTACCAATGCCGCCCCCTT‑CCCACAGGCATCTAACTTTTTTTTATATCCCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTc < 4:681396/140‑1 (MQ=25)
gcatggcaaCCCCCACGTCCCTAACAACACAAACCCCTTCAGATCGCCCGTCTACAAATACCCCCACCTT‑CGCACAGTCATCTTACTTTTTTTTAACTCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTc < 2:969089/133‑1 (MQ=25)
cttcaccccccACGTCCGTAAGAACACTAAACCCTGAACCTAGCGCGGCTACAAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCGCGTTTGGTGCGAGGGGGGGGACTGGAACCCCCACGTcc < 6:652057/132‑1 (MQ=25)
ccccccccACGGCCGTAAGACCACTAACACCTGATGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGAACAGGAAACTTACTTTTTTTGATATCGCGTCGTTTGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAg < 8:802046/137‑1 (MQ=25)
ccaCCCCCACGTCCGAAAGAACACTAACACCTGACGCTAGCTCGTCTACACATTCCGCCACCTA‑CCCACAGTCATCTAACTTTTTTTTAAATCCCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAg < 4:482273/138‑1 (MQ=25)
cacccccccCGTCCGTAAGAACAATAACACCTGATGCTAGCGCGTATACCAATTCCGCCACCTT‑CTCACAGGCATCTAACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAg < 4:1002422/137‑1 (MQ=37)
caccccccACGTGCGTAAGAAACCTACAATCTGATGTTTTCGGTTATACCTATTCCGCCACCTT‑CGTAATGTCATATAACTTTTTTTGAATTAGCCTCTTTTGGTGCGAGGGGGGGGATTTGAACCCCCACGTCCGTAAg < 4:1002428/137‑1 (MQ=12)
caaCCCCCACGTCCGAAAGAACACACACACCTGCAGCTAGCCCGTCTACCAATTCCGCCACCAT‑CCCACAGCCACCTTCCTTTTTTTGATATCGCCTCGTTTGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAg < 8:1086233/139‑1 (MQ=25)
ccACTTCGGTACGACCCCTCACACCTGAAGCTAGCGCGTCTACCAATCCCGCCACCTT‑CGCACATTCATCTTACTTTTTTTGATCTCGCCGCTTTTGGTGCGCGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACt < 4:687960/140‑1 (MQ=25)
aCGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCAGCTTACTTTATTTGATATATCCACCTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTaa > 1:1188267/1‑140 (MQ=25)
aCGTCCGTAAGAACAATAACACCTGAACCTAGCCCGTCTACCAATTCCGCCACCTT‑CCCACAGCCATCTAACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTTAACCCCCACGTCCGTAAGAACACTaa < 2:687397/140‑1 (MQ=37)
aCGTCCGTAACAACACTAAAACATTAAGCTTGGGCGTATACCAATTCCGCCACCTT‑CCCACAGTCATCTAACTTTTTTTGATATCGCCTCGTTTGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACt < 6:574003/138‑1 (MQ=37)
aCGTCCGAAACAACACTAACACATGACGCTAGCCCGTATACCCATTCCGCCACCTT‑CCCACAGTCATCTTACTTTTTTTGATTTCGCCTCGTTTGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTaa < 4:460466/140‑1 (MQ=37)
gTAATAACACTAACACCTTATGCTAGCGCGTCTATCTAAGCCGCCACATT‑AGCACAGTAATCTTACTTTTTTGTTTATCTCCGCGTTTGGTGCGTGGGGGGGGAGTTGAACCCCCACGTCCGTAAGAACACTAACACCtt < 8:823797/140‑2 (MQ=18)
gTAAGAACACTAACACCTGAAGCTAGCGCGTATACCAATTCCGCCACCTT‑CGCACAGTGTTCTTACTTTTTTTGATATGGCATCGATTGGTGCGAGGGGGGGGACTTGCACCACCTCGTCCTTAAGTACACGAACACATg > 4:508524/1‑140 (MQ=21)
acacTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTATTAAGATATCGCATCTGTGGGTGGGAGGGGGGGGGCTTGCACCCCCACGTCCGTAATAACACGACCACCTGAAGcaa > 4:137136/1‑138 (MQ=21)
tAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCTGCTTACTTTTTTTGATATCGGCGCGGGTGGGGCGAGGGGGGGGAGTTTCACCGCCACGTCCTTAGTAAAAAAAACACCTGTCGCTAga > 6:442661/1‑137 (MQ=16)
accacCTGTAGCTATCGCGTCAACCAATACCGCCTCCTT‑CTCACAGCCAACTTACTTTTTTTTATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGcgcg < 8:519235/138‑1 (MQ=21)
acttGAAGCTAGCGCGTCTACCAATTCCGCCACCTC‑CCCACAGGCAACTAACTTTTTTTGATTTCCCCTCTTTTGGGGCGTGGGGGGGGACTTTAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCt < 8:781964/137‑1 (MQ=21)
tGAAGCAAGCGCGGCTCCCCAATCCCCCCCCTT‑CGACCAGGCATCTCACTTTTTTTTAAATCGCCTCTCTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTa < 6:860441/138‑1 (MQ=17)
tcagctagctCTTCTACAAATACCGCAACCTT‑CCCACATTCCTCTACCTTTTTTTGATTTCGCCTCTTTTGGTGCGCGGGGGGGGACTTTAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTAc < 6:351998/136‑1 (MQ=17)
gAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTAGTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGACCCCCCACGTCCGTAAGAACACTAACACCTGACGCTAGCGCGTCTACCa > 1:979789/1‑140 (MQ=255)
gAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCACGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGTAAACATCCCCCTGAAGCTAGAGGCTCTACCa > 4:779840/1‑140 (MQ=37)
gAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCAAACTCATATTACTTTTATTGATATAGGCGCGTTGTGGGCGAGGCGAGGGCATTGCACCACAACGTCAAAAAGAACAGAACCACCTAAAGCTACGGCGTCTACCa > 4:271114/1‑140 (MQ=12)
tAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCAGCTTACTTTTTTTGATATCGGCTCGGTTGGTGCGAGGGGGGGGCGTTGAACCAGCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCGACCAATTcc > 3:486229/1‑140 (MQ=25)
tactcggcTACCAATTCCGGCACGTT‑CTCACAGGCATCTATCTTTTTTTGATCTCCCGTAGTTGTGGGCGAGGGGGGGTTCTTGACCCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCg < 2:841412/133‑1 (MQ=9)
aGCGCGTCTACCAATTCCGCCCCCTT‑CGCACACGCATCTTACTTTTTAAGAGATCGCAGCTGGTGGGGCGAGGGGGGGGACTTGCACCCCAACGTCCGTACGAACAAAAACACCTGACGCTAGGGCGTCGACCAATTccc > 8:974704/1‑139 (MQ=16)
aGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCATACTTTAATTGAAATCGACGCGGTTGGGGCGAGGCGTGGGGATTGAACCACAACGTCCTTAAGAACACAACCACCTTACGCTAGATCGTCTACCAATTACg > 2:534196/1‑140 (MQ=255)
tcccgTCAACCAATTCCGCCACCTA‑CTCACAGTCATCAAACTTTTATTGATATCGCCTCGTTTGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGc < 4:1144740/137‑1 (MQ=18)
gcttgTCTACACATTCCGCCACCTTCCGCA‑AGTCATCTAACTTTTTTTTATTTATCGTCTTTTGGGGCTTGGGGGGGGACTTGACCCCCCACGGCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGc < 7:404237/136‑1 (MQ=9)
gcccgTCAACAAAATCCGCCACCTT‑CCCACAGTCATCATACTTTTTTTGAACTCCCCTCGTTTGGGGCGTGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTcc < 5:1036125/135‑1 (MQ=18)
ccgcgTCAACCAATACCGCCCCCTT‑CGAAAAGTAATCATACTTTTTTTCAATACGCCTCGTCTGCTGCGAGGGGGGGGACTTGCACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGc < 2:979789/139‑1 (MQ=17)
ccgcgGCTACATATTCCGCCTCATT‑CGCTCTGTGATTTTCTATTTTTTGATTACGCCTAGTTTGGTGCGGGGGGGGGGAGTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGc < 7:126839/139‑1 (MQ=14)
cgcgTCTACCAATTCCGCCACCTT‑CGCACAGTCTTCTTACTTTTTTTGATTTCGGCGCGGTTGGGGGGAGGGGGGGGGCTTGCACCCCCACGTCCGTAAGAACAGTAACGCCTGAAGCTAGATCGTCTACCAATTCCGcc > 2:1091248/1‑140 (MQ=21)
cgcgTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTTCTTTTTTTGATATCGCCTCGTTTGGTGGGAGGGGGGGGAGTTGCACCCCCACGTCCGTAAGAAAACATACCCCAGAAGCTAGCGCGTCTACAAAtgacccc > 2:619136/1‑134 (MQ=25)
cgcgTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTACGcc > 3:781890/1‑140 (MQ=255)
cgcgTCTACCAATTCCGCCACCTT‑CGCACAGACATCTTAATTTTTTAGATATCGCCTCGGGTGGTGGGAGGGGGGGGACTTGAACCACAACGTCCGTAAGTAAACAAACACCTGAAGCTAGCTCGTCTACCAAttacc > 6:1125142/1‑135 (MQ=21)
cgcgTCTACCAATTCCGCCACCTT‑CGCAAAGGCAGCTTACTTTTTTTGATTTCGGAACGGGTGGGGCGAGGGGTGGGACTTGCACCCCCACGTCCTTAAGAACACATCCACCTGACGCTAGAGCGTCTACAAATTCCGcc > 2:267737/1‑140 (MQ=16)
gacatacAATTCCGCCACCAT‑CCCACAGTCATCTTACTTTTTTTTATATCCTCTCTTTTGGGGCGCGGGGGGGGACTTTAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCAcc < 2:1004602/134‑1 (MQ=18)
gTCTCCAAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCCCCTCTTTTGGTGCGAGGGGGGGTACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCAcc < 7:93785/140‑1 (MQ=21)
tCTACCAATTCCGCCACCTT‑CGCACAGTCAGCTTACTTTTTTTGATATCGCCTCGGTTGGTGCGAGGGGGGGGGCTTGAACCCCCACGTCCGTAAGAACACTACCACCTGACGCTAGCGCGTCTACCAATTACGCCaacg > 1:1179878/1‑137 (MQ=21)
tCTACCAATTACGCCACCTT‑CGCAAAGTAATATTACTTTATTAGATATCGCCTCGTTTGGTGCGAGTGGGGGGAATTGAACCACCACGTCCGTAATAAAACAAACACATGAAGCTAGCTCGTCTACAAATTCCGCCCCCt > 4:222491/1‑140 (MQ=255)
tCTACAAATTCATCCACCTT‑CGAACAGACTTCTTAATTTTTTTGATATCCCCTGGTTGGGGGCGTGGGGGGGGAATTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCt < 2:371603/140‑1 (MQ=17)
tACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCAGTAAGAACACTAACCCCTGACGCTAGCGCGTCTACCAATTCCGCCACCTTc > 1:1190374/1‑140 (MQ=255)
ccAATTCCGCACCCTT‑CGCCCCGTCTTCATACTTTTTTTGATATCGGCTCGTTTGGGGCGCGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTc < 6:310801/138‑1 (MQ=17)
cAATTCCGCCACCTT‑CCCACATTCATCTTACATTTTTTGAAATCCCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc < 8:1002412/140‑1 (MQ=18)
cAATTCCGCCACCTT‑CCCACAGGCATCTTACATTTTTTGATATCGCCTCGTTTGGTGCGCGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc < 8:723579/140‑1 (MQ=255)
cAATTCCGCCACATT‑CGCACAGGCATTTTACTTTTTTTGATATGTCCTATTTGGGTGCGAGGGTGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc < 2:615705/140‑1 (MQ=17)
cAATTCCGCCAATTA‑CCCACAGTCATCTTACTTTTTTTGATATCCCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc < 4:13268/140‑1 (MQ=18)
cAAGTCCGCCCCCAC‑GGCCCAGTCATATTACTTTTTTTTATAGAGCCTAGTTGTGTGCGAGGGGGGGTAATATAACCCCCACGTCCGTAATAACACTAACACCTGAAGCTTGCGCGTCTACCAATTCCGCCACCTTCGcc < 7:544879/140‑1 (MQ=9)
acaTTCCGCCACTTA‑CCCACAGTCATATAACTTTTTTTTAACCGGCCTCGTTTGGGGCGTGGGGGGGTACTTTACCCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc < 7:119916/138‑1 (MQ=14)
aaaTTCCGCCACCTT‑CTCACAGTCTTCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc < 4:1149310/139‑1 (MQ=255)
aaaTTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCTTTTGGGGCGCGGGGGGGGACTTCAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCg < 6:507824/137‑1 (MQ=255)
aaaTTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGTGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc < 2:276547/139‑1 (MQ=255)
ccGCCACCTT‑CCCACATGCATCAAACTTTTTTTGATATCCCCTCCTTTGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAg < 6:16563/138‑1 (MQ=17)
ccGCCACCTA‑CCCACAGGCATCTTACTTTTTTTTATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTg < 3:132497/140‑1 (MQ=255)
ccGCCACCTA‑CAAAATGTCATATAACTTTTTTTTATATCGCCTTTTTTGGTGCGAGGGGGGGGACTTTAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTg < 3:306155/140‑1 (MQ=14)
ccGCCACATT‑CCCCACGTCATCTAACTTTTTTTGATCTCGCCTCTTTGGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAg < 6:202006/138‑1 (MQ=17)
ccACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGGTTGGGGCGAGGGGGGGGCCTTGCACCCCCACGTCAGTAAGAACACTACCACCTGAAGCTACCGCCTCTACCAATTCCGCCACCTACGccaactaa > 6:677239/1‑132 (MQ=18)
ccACCTT‑CGCACAGTCATCTTACTTTTTTTGATATAGCCACGTGTGGTGCGAGGGGGGGGACTTGAACCCCCCCGTCCGTAAGAACACAACCACCTGAAGCTAGCGCGTCTACAAATTCCTCCCCCTTCGCCCAGTgagc > 4:435496/1‑137 (MQ=18)
cACCTT‑CGCACAGTCATCTTACTTTTTTTGATCTCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAg < 4:901198/140‑1 (MQ=255)
cACCTT‑CCCACATTCATCTTACATTTTTTGATTACGCCACTTTTGGTGCGAGGGGGGTGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAg < 8:318950/140‑1 (MQ=17)
cACCGT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACCCCTGACGCTAGCGCGTCGACCAATTCCGCCACCTTCGCCCacgtcg > 5:554708/1‑133 (MQ=18)
atccTA‑CGCACAGTCATATTACTTTTATTGAAAGCGCGTGTGTTGGGGCGAGGGGGGGTACTTTAACCCCCACGTCCGTAATAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAg < 8:939125/138‑1 (MQ=14)
aCCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCCCCTACGCACAGTGcca > 6:397276/1‑136 (MQ=255)
t‑CGCACAGTGATCTTACTTTTTTTGATATCTCCTCGTTTGGTTCGAGGGGGGGGTCATGAACACACACGTACGTTAGCACACTAACACCTGAAGCTAGAGCGTCTAACAATTCCGCCCCCTTAGCCCAGTGCGAACAatt > 2:405372/1‑139 (MQ=18)
t‑CGCACAGTCATCTTACTTGTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACCCTAACACCTGAAGCTAGCGCCTCAACCAATTCCGCCCCCTTCGCCCAGGGCGAGGAatt > 2:148156/1‑139 (MQ=18)
cacaGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACAAATTCCGCCACCTTCGCCCAGTGCGAGCAatat > 6:877300/1‑138 (MQ=255)
cacaGTCATCTTAATATTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGAAAGAACACAAACACCAGAAGCTAGAGCGTCTACCAATACCGCCACCTTCGCCCAGGgcgcgctcaaa > 6:823229/1‑133 (MQ=18)
caGCCATCTTACTTTATTTGAAATCCCCCCGTTTGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAAc < 2:504158/140‑1 (MQ=18)
tCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGGGCGAGCACTATCAACGTg > 4:902683/1‑140 (MQ=255)
tCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGAGCGAGCAATATCAACGTg > 7:803769/1‑140 (MQ=255)
tCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCACTGCGACAAATATCAACGTg > 4:587106/1‑140 (MQ=255)
tCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCACTGACATCAATATAAACgat > 1:777621/1‑138 (MQ=18)
tCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCAGCCACCTTCGCCCAGTGCGAGAAATATAAACgat > 8:191690/1‑138 (MQ=255)
aTCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTACCACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCACTCCGAGCAATATCAACGtt > 6:243535/1‑137 (MQ=255)
aTCGTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACAAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTAGCCCAGTGCGAGCACTGTCacgtaa > 5:288878/1‑133 (MQ=18)
tCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCACAGAGACCAATATAAAAGTGGtt > 8:4259/1‑140 (MQ=18)
aatACTTTATTTGATACAGCCTCGTTTGGTGGGTGGGGGTGGACTGGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGttt < 8:170408/138‑1 (MQ=18)
|
AAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTT > NZ_CP022686/3461066‑3461339
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
