Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F2 I0 R1
|
233 |
6461.8 |
9239822 |
98.3% |
9082745 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,905,178 |
T→G |
15.2% |
F102V (TTC→GTC) |
CIW80_RS24815 → |
coenzyme F390 synthetase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,905,178 | 0 | T | G | 15.2%
| 173.7
/ 2.9
| 105 | F102V (TTC→GTC) | CIW80_RS24815 | coenzyme F390 synthetase |
| Reads supporting (aligned to +/- strand): ref base T (43/43); new base G (16/3); total (59/46) |
| Fisher's exact test for biased strand distribution p-value = 9.41e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 113 total aligned reads displayed.
CAGTGGCCAATGATGGATAAAGCGTTAATGATGACGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCGGGTCGTC‑GTGGGCTTTTTGTTGTTAGCCCGCACGAGCAACA‑GATGTGGGCCGCCGGTGTGCTGGCAAAAGTGTTGCCCGACGGTTTATTTGCCAAAGAGCGGGTGGCGCT > NZ_CP022686/4905040‑4905317
|
cAGTGTCCACTGATGGATTAAGCGTTAATGATGACGCACTTCGTTGAGATGAATACCCCAGGTTTAAAGCTCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGGCGTGATTTCAAACCCTGCGTTGGCAGGtt < 8:750649/140‑1 (MQ=255)
cAGTGGCCAATGATGGATAAAGCGTTAATGATGACGCACTTCGATGAGATGAATACCGCATGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGCAGGtt < 7:1085712/140‑1 (MQ=255)
cAGTGGCCAATGATGGATAAAGCGTTAATGATGACGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGCAGGtt < 4:625822/140‑1 (MQ=255)
gTGGCCAATGATGGATAAAGCGTTAATGATGACGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGTTTTCAAACCCAGCGTTTGGAGGttaa > 1:128167/1‑138 (MQ=255)
ggCCAATGATGGATAAAGCGTTAATGATGACGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCAGCCTTGGGAGGttaa > 6:416622/1‑136 (MQ=255)
gCCAATGATGGATAAAGCGTTAATGATGACGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGAGTTGAAACCCTGCGTTGGCATGtgacg > 6:522190/1‑134 (MQ=255)
ccAATGATGGATAAAGCGTTAATGATGACGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCAGCGTTGGGAGGGTCAgtgt > 2:813176/1‑140 (MQ=255)
gatgTATAAAGCGTTAATGATGACGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGCAGGTTCAGTGTTGGGc < 8:197477/140‑1 (MQ=255)
atgGATAAAGCGTTAATGATGACGCACTTCGCTGCGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGCAGGTTCAGTGTTGGGCt < 8:385980/140‑1 (MQ=255)
atgGATAAAGAGTTAATGATGAAGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCTGTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGCAGGTGCAGTGTTggg < 6:596048/138‑1 (MQ=255)
atgGAAAATGCGCTCTTGATGACGCACTTCGATGAGATGAATACCGGAGGTTTAAAGCGCGACGAACTTCTCGTTTGTGCAATTCGCAGTGAGCAGAGTCGTGTTTTCAAACCCTGCGTTGTCAGGTTCAGTGTTggg < 6:1133147/138‑1 (MQ=255)
tgGATAAAGCGTTAATGATGACGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGCAGGTTCAGTGTTGGGCtt < 7:977250/140‑1 (MQ=255)
gATAAAGCGTTAATGATGACGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGGTTTAAAACCCCGGGGTGGGAGGTTAAGTGTTgggggttg > 3:962325/1‑135 (MQ=255)
gATAAAGCGTTAATGATGACGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGGAGGTTGAGTGTTGGGcgt > 6:527827/1‑136 (MQ=255)
gATAAAGCGTTAATGATGACGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTAAAACCCTGCGTTGGGAGGTTCATTGTTGGGCttta > 2:367611/1‑139 (MQ=255)
gATAAAGCGTTAATGATGACGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTAAAACCCAGCGGTGGCAGGTTCAGTGTTggggtgtg > 2:466142/1‑135 (MQ=255)
tAAAGCGTTAATGATGACGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGCTTTAAAAACCTGCGTTGGGAGGTTGAGTGTTTGGGTTttat > 1:158468/1‑140 (MQ=255)
cgCGTTAATGATGACGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGCAGGTTCAGTGTTGGGCTTTCATCAg < 2:1086486/139‑1 (MQ=255)
aGCGTTAATGATTACGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTAAAACCAAGCGTTGGCAGGGTGTGGGTTGGGCGGTcagcag > 2:939317/1‑140 (MQ=255)
aGCGTTAATGATGACGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGGTTTCAAACACAGCGGTGGCAGGGTAAGTGTTGGGCGTTGATAAg > 1:1122397/1‑140 (MQ=255)
aGCGTTAATGATGACGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTAAAACCCAGCGTTGGGCGGTGGAGTGTTTGGCGTtaatcac > 3:726204/1‑139 (MQ=255)
aGCGTTAATGATGACGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTAAAACCCAGAGGTGGCAGGTTCAGTGTTGGGCTTTAATAAg > 3:726206/1‑140 (MQ=255)
cGTTAATGATGACGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGGAGGTTGAGTGTTGGGGTTTAATCAg > 5:778817/1‑138 (MQ=255)
cGTTAATGATGACGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGGAGGTTCAGTGTAGGGCTTTAATCAg > 6:471395/1‑138 (MQ=255)
cGTTAATGATGACGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTAAAACCCAGCGTGTGGAGGTTAAGTGTTTGGAGTTCATCAGGt > 7:141113/1‑140 (MQ=255)
tAATGATGACGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGGTTTAAAAAACAGCGTTGGGTGGGTGAGTGTTGGGCTTTAATAAGGTTCa > 1:1046653/1‑140 (MQ=255)
aaTGATGACGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGCAGGTTCAGTGTTGGGCTTTCATCAGGTACAt < 3:898093/140‑1 (MQ=255)
aaTGATGACGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTAAAAACCAGCGTTGGCATGTTCATTGGTGGGGGTTAATCAGGTACaa > 2:523541/1‑139 (MQ=255)
atgatgACGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGGTTTCAAACCCAGCCGTGGCAGGTTCAGGGTTGGGCTTGAATGATGTACa > 5:1117797/1‑138 (MQ=255)
tatgaAGCACTTCGATGATATTAATACCGCAGTTTTAAATCGCGACGAACTTCTAGATTGTGCAATGCTCAGTGATCAGAGTCGTGATTTCAAAACCTGCGTT‑GCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCg < 5:678232/137‑1 (MQ=255)
atgaCGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCggg < 1:315388/140‑1 (MQ=255)
gaCGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCTTGTTTTGAAACACTGGGTTTGAAGGTTTATTGTTGGGCTGTAATCATGGTCATAGGgtg > 4:317012/1‑139 (MQ=255)
gaCGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGTTATCAAACCCTACGTTGGAAGGTTGAGTGTTGGGCTTTGAACACGTAAAtgaggtg > 2:1045714/1‑134 (MQ=255)
gaCGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGCTTTCAAACCCTGCCATGGGCGGGTCAGGGTTGTGCTTTCAACACGTACATCGGgtg > 4:1006017/1‑139 (MQ=255)
gaCGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGCCTTGATTTCAAACCCTGCGTTGGCAGGTTAAGTGTTGGGCGTGCATCAGGTAAATCGGgtg > 2:201121/1‑139 (MQ=255)
gaCGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTAGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTAAAACCCTGCGTGTGCAGGTTCAGTGTTGGGCGTTCATAAGGTACATCGGgtc > 3:861203/1‑140 (MQ=255)
cGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGTTTTCAAACCCGGCGGTGGGAGGTTCAGTGTTGGGGGGTCATCAGGTTCATCGGgtg > 6:115909/1‑137 (MQ=255)
cGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCCAACCCTGCGTTGGCAGGTAAAGTGTTGGGGTTTAATCAGGTACATCGGgtg > 5:372380/1‑137 (MQ=255)
aCTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACTAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCGGGTcgtc‑gt < 7:662166/140‑1 (MQ=255)
cTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTACAAACCTGCGGTGGGAGGGTGAGTGTTGGGCTGTCATCAGGTTCATCGGgtcgggggg > 4:244195/1‑135 (MQ=255)
ttCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTAAAACCCAGCGTTGGGAGGTTGAGTGTTGGGGTTTGATGAGGGTCATAGGGTCGTA‑GTgg > 7:1016818/1‑140 (MQ=255)
atgagatgaATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTAAAAACCAGCGGTGGCACGTTCAGTGGTGGGGTGTGATCAGGTTAATACGGTCGGC‑GTgggg > 6:817211/1‑137 (MQ=255)
gagatgaATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCTGTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCGGGTCGTC‑GTGGGCtttt < 2:645886/140‑1 (MQ=255)
gatgaATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTAAAACCCAGCGGTGGGAGGTTCATTGTTGGGCTTTCAGAAGGTTCAAAGGGTGGTC‑GTGGGCgttttt > 7:180116/1‑139 (MQ=255)
aaTACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTAAAACCCTGCGTTTGCGGGGTTATTTTTGTGCTTTATAAACGTACAACGGGTCAGC‑GTGGGCTTTTttttgt > 4:903669/1‑140 (MQ=255)
cAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGGTTTCAAACCCAGCGGTGGCCGGGTACGTGTTGGGGGTTGATCAGTGTCATCGGGGGCTG‑GTGGGGTGTTTtttgttttaccg > 3:1093837/1‑134 (MQ=255)
cAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCGGCGGTGGCAGGGTCAGTGTTGGGGTTTAATCAGGGACATCGGGGAGTG‑GTGGGGGTTTTtttgttttcccc > 8:660354/1‑134 (MQ=255)
ggTTTAAAGCGCGCTGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGGGATTTCAAACCCTGCGTTTGCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCGGGTCGTC‑GTGGGCTTTTTGTTGTTAGCCCg < 5:657105/138‑1 (MQ=255)
ggTTTAAAGCGCGACTAACTTCACGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCGGGTCGTC‑GTGGGCTTTTTGTTGTTAGCCCg < 6:682593/138‑1 (MQ=255)
ggTTTAAAGCGCGACGCACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGGTTTCACACCCCGCAGTGGGAGTGTGAAGGTTTGGGGTTCATAAGGTACAAAGGGGGCTC‑GTGGGCGTTTTTTTTTTTGCACg > 6:1137164/1‑138 (MQ=255)
ggTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGGTTTCAAACCCTGAGTTGGCAGGGTAAGTGTTGGGGGTTAATCAGGTTCATAGGGTGGTG‑GTGGGCTTTTTTTTTTTTGcccc > 5:947083/1‑137 (MQ=255)
ggTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCCGCGTTGGCAGGGTAAGTGGTGGGCTTTGATGCGGGGCAACGGGGCGGC‑GTGGGCGTTTTTTTGTTTGcccc > 5:728286/1‑137 (MQ=255)
tttAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCGGGTCGTC‑GTTGGCTTTTTGTTGTTAGCCCGCACg < 1:610542/140‑1 (MQ=255)
tttAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCGGGTCGTC‑GTGGGCTTTTTGTTGTTAGCCCGCa < 6:861784/138‑1 (MQ=255)
tAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCGGGTCGTC‑GTGGGCTTTTTGTTGTTAGCCCGCACGAg < 7:947657/140‑1 (MQ=255)
aaaGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGCAGGGTCAGTGTTGGGCTTGCATCAGGTACATCGGGTCGTC‑GTGGGCTTTTTGTTGTTAGCCCGCACGAGc < 2:1117953/140‑1 (MQ=255)
aGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGCAGGTTCAGTGTTGGGCTTTCATCAGGTTCATCGGGTCGTC‑GTGGGCTTTTTGTTGTTAGCCCGCACGAGc < 5:463849/138‑1 (MQ=255)
aGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGCAGGTTCAGTGGTGGGCTTTCATCAGGTACATCGGGTCGTC‑GTGGGCTTTTTGTTGTTAGCCCGCACGAGCaa < 7:89075/140‑1 (MQ=255)
aGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGCAGGTGCAGTGTTGGGCTTTCATCAGGTACATCGGGTCGTC‑GTGGGCTTTTTGTTGTTAGCCCGCACGAGCaa < 3:918666/140‑1 (MQ=255)
cgacgaACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGGTTTCAAACCCTGCGTGGGGAGGGTAAGTGTTGGGCGGTGATCAGGGACATAGGGTGGTC‑GTTGGGTTTTTTTTTTTTGCCCGCACgcgcgaacgc > 2:284113/1‑134 (MQ=255)
cgacgaACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGCAGGTTAAGTGTTGGGCTTTAATAAGGTTAAAACGGTCGGC‑GGGGGGGTTTTTTTTTTATCCCCCCCGAGCaaaaaa > 1:1123231/1‑136 (MQ=255)
cgacgaACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTAAAACCCAGCGGTGGCAGGGTCAGTGTTGGGCTTGGATCAAGTACCTCGGGTGGTCGGTGGGGTTTTTTTTGTT‑GCCCGCCCCCACAACA‑Ga > 4:11558/1‑140 (MQ=255)
cTTCTCGATTGTGCAATTCGCAGGGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGCAGGTTAAGTGGTGGCCTTTCATCAGGTACATCGGGGCGTC‑GTGGGCTTTTTGTTGTTAGCCCGCACGAGCAACA‑GATGTGGgc < 7:150393/140‑1 (MQ=255)
cTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGCAGGTTCAGTTTTGGGCTTTCATCAGGTACATCGGGTCGTC‑GTGGGCTTTTTGTTGTTAGCCCGCACGAGCAACA‑GATGTGGgc < 1:523541/140‑1 (MQ=255)
cTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCGGGTCGTC‑GTGGGCTTTTTGTTGTTAGCCCGCACGAGCAACA‑GATGTgg < 6:273917/138‑1 (MQ=255)
cGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGCAGGTTCAGTGGTGGGCTTTCATCAGGTACATCGGGTCGTC‑GTGGGCTTTTTGTTGTTAGCCCGCACGAGCAACA‑GATGTGGGccgccg < 3:93452/140‑1 (MQ=255)
aTTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGCAGGGTCAGTGTTGGGCTTTCATCAGGTACATCGGGTCGTC‑GTGGGCTTTTTGTTGTGAGCCCGCACGAGCAACA‑GATGTGGGCCGCCGgt < 4:715188/140‑1 (MQ=255)
ggCAATGCGCCGGGAGCAGAGGCGTGATTTCAAACCCTGCGTTGGCAGGTTCAGTGGATGGCTTTCATCAGGTACATCGGGGCGTC‑GTGGGCGTTTTGTTGTTAGCCCGCACGAGCAACA‑GAGGTGGGCCGCCGgtgt < 5:924787/137‑1 (MQ=255)
ccAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGCAGGTTCAGTGTTGGGCTTTCATGAGGTACATCGGGTCGTC‑GTGGGCTTTTTGTTGTTAGCCCGCACGAGCAACA‑GATGTGGGCCGCCGGTGTGCt < 3:245088/139‑1 (MQ=255)
cAATGCGCAGTGAGCAGAGTCGTGATTTAAAACACTGCGGTGGGAAGTTCAGTGTTTGGCTTTAAACAGGTACAACCGGTAGTC‑GCGGGCATTTTGTTGTTTAACCGCCCCCGCAACA‑AAAGTGGGCCGCCGCTCTGcag > 4:878947/1‑138 (MQ=255)
gcgcAGTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGCAGGTTCAGTGTTGGGCTTTCATCATGTACATCGGGTCGTC‑GTTGGCTTTTTGTTGTTAGCCCGCACGAGCAACA‑GATGTGGGCCGCCGGTGTGCTGGCaa < 3:401502/140‑1 (MQ=255)
gcgcAGTGAGCAGAGTAGTGATTTCAAACCCTGCGTTGGCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCGGTTCGTC‑GTGGGCTTTTTGTTGTTAGCCCGCACGAGCAACA‑GATGTGGGCCGCCGGTGTGCTGGc < 6:816964/138‑1 (MQ=255)
cgcAGTGAGCAGAGTCGTGATTTAAAAACCGGCGTTGGGAGGTGAAGTGTTTGGGTTTAATCATGGTCAAAGGGGAGTC‑GTGTGGTGTTTTTTTTTATGACGCCCGAGCAAAACAATATGGG‑CGGAGGTGTGGTGGCaaa > 2:359839/1‑140 (MQ=255)
gcAGTGAGCAGAGGCGTGATTTCAAACCCTGCGTTGGCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCGGGTCGTC‑GTGGGCTTTTTGTTGTTAGCCCGCACGAGCAACA‑GATGTGGGCCGCCGGTGTGCTGGCaaaa < 4:30331/140‑1 (MQ=255)
aGTGAGCAGAGTCGTGATTTCAAAACCAGCGGTGGGAGGTTCAGTGTTGGGCGTTAAAAAGGGACCTAGGGGCGTC‑GGGGGCATTTTTTTGTTATCCCGCCCCCCGAAAA‑GATGTGGGCCCCCCGGGTGCGGGGaaaaca > 2:1040813/1‑138 (MQ=255)
aGTGAGCAGAGTCGTGATTTAAAACCCTGCGGTGGGAGGGTGAGTGTTGGGGTTTCATCAGGGAAATAGGGTCGTG‑GGGGGGGTTTTTTTTTTAGCCCGCCCGCGCAACA‑GAAGTGGGGCGCCGGGTTGCGGGGaaaatt > 4:185489/1‑138 (MQ=255)
gTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCGGGTCGTC‑GTGGGCTTTTTGTTGTTAGCCCGCACGAGCAACA‑GATGTGGGCCGCCGGGGTGCTGGCAAAAgtg < 7:245355/140‑1 (MQ=255)
agTCGTGATTTCAAACCCTGCGTTGGCAGGTTCAGTGTTGGGCTTGCATCAGGTACATCGGGTCGTC‑GTGGGCTTTTTGTTGTTAGCCCGCACGAGCAACA‑GATGTGGGCCGCCGGTGTGCTGGCAAAAGTGTTGCCCGa < 1:890323/140‑1 (MQ=255)
agTCGTGATTTCAAACCCTGCGTTGGCAGGTTCAGTGTGGGGCTTTCATCAGGTACATCGGGGCGTC‑GTGGGCTTTTTGTTGTTAGCCCGCACGAGCAACA‑GATGTGGGCCGCCGGTGTGCTGGCAAAAGTGTTGCCCGa < 8:474332/140‑1 (MQ=255)
tggtttAAAACCCAGCGGTGGCAGGTTCAGTGTTGGGCGTTCATCAGGTACATCGGGTCGTC‑GTGGGGGTTTTTTTGTTAGGCCCCCCCCGCCAAA‑GATGTGGGCCGCCGGGGTGCTGGGAAAAGTGTTGGCCGCCgggt > 4:666859/4‑138 (MQ=255)
tttCAAACCCTGCGTTGGCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCGGGTCGTC‑GTGGGCTTTTTGTTGTTAGCCCGCACGAGCAACA‑GATGTGGGCCGCCGGTGTGCTGGCAAAAGTGTTGCCCGACGGttt < 6:318161/138‑1 (MQ=255)
aaaCCCTGCGTTGGCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCGGGTCGTC‑GTGGGCTTTTTGTTGTTAGCCCGCACGAGCAACA‑GATGTGGGCCGCCGGTGTGCTGGCAAAAGTGTTGCCCGGCGGTTTAttgcc > 8:705426/1‑137 (MQ=255)
aaaCCCTGCGTTGGCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCGGGTCGTA‑GTGGGCTTTTTGTTGTTATCCCGCACCAGCAACA‑AATTTTGGCCGCCGGTGTTCTGGCAAAATTTTTGGCCGCCGGTttttttta > 7:14328/1‑138 (MQ=255)
aCCCTGCGTTGGCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCGGGTCGTC‑GTGGGCTTTTTGTTGTTAGCCCGCACGAGCAACA‑GATGTGGGCCGCCGGTGTGCTGGCAAAAGTGTTGCCCGACGGTTTATTTGc < 5:527827/138‑1 (MQ=255)
aCCCTGCGTTGGCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCGGGTCGTC‑GTGGGCTTTTTGTTGTTAGCCCGCACGAGCAACA‑GATGTGGGCCGCCGGTGTGCTGGCAAAAGTGTTGCCCGACGGTTTATTTGCCa > 3:934113/1‑140 (MQ=255)
cccTGCGTTGGCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCGGGGCGTC‑GTGGGCTTTTTGTTGTTAGCCCGCACGAGCAACA‑GATGTGGGCCGCCGGTGTGCTGGCAAAAGTGTTGCCCGACGGTTTATTTGcc < 5:416622/138‑1 (MQ=255)
tGCGTTGGCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCGGGTCGTC‑GTGGGCTTTTTGTTGTTAGCCCGCACGAGCAACA‑GATGTGGGCCGCCGGTGTGCTGGCAAAAGTGTTGCCCGACGGTTTATTTGCCAAaga > 4:876841/1‑140 (MQ=255)
tGCGTTGGCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCGGGTCGTC‑GTGGGCTTTTTGTTGTTAGCCCGCACGAGCAACA‑GATGTGGGCCGCCGGTGTGCTGGCAAAAGTGTTGCCCGACGGTTTATTTGCCAAaga > 4:807906/1‑140 (MQ=255)
gCGTTGGCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCGGGTCGTC‑GTGGGGTTTTTGTTGTTAGCCAGCACGAGCAACA‑GATGTGGGCCGCCGGTGTGCTGGCAAAAGTGTTGCCCGACTGTTTATTTGCCAAagag > 1:726852/1‑140 (MQ=255)
gCGTTGGCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCGGGTCGTC‑GTGGGCTTTTTTTTGTTAGCCCGCACGAGCAACA‑GATGTGGGCCGCCGGTGTGCTGGCAAAAGTGTTGACCGACGGGTTATTTGCCAAacag > 3:730987/1‑140 (MQ=255)
gCGTTGGCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCGGGTCGTC‑GTGGGCTTTTTGTTGTTAGCCCGCCCGAGCAACA‑GATGTGGGCCGCCGGTGTGCAGGCAAAAGTGTTGCCCGACGGTTTATTTGCCaaaaac > 2:563542/1‑137 (MQ=255)
gCGTTGGCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCGGGTCGTC‑GAGGGCTTTTTGTTTTTAGCCCGCACGACCAACA‑GATGTGGGCCGCCCGTGTGCTGGCAAAAGTGTTGCCCGACGGTTTATTTGCCACagag > 4:1011956/1‑140 (MQ=255)
cGTTGGCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCGGTTCGTC‑GTGGGCTTTTTGTTGTTAGCCCGCCCGAGACACA‑GATGTGGGCCGCCGGTGTGCTGGCAAAAGTGTTGCCCGACGGGTTATTTTCCAAaga > 6:612873/1‑138 (MQ=255)
cGTTGGCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCGGGTCGTC‑GTGGGCTTTTTTTTGTTTTCCCGCACGAGCAACA‑GATGTGGGCCGCCGGTGTGCTGGCAAAAGTTTTGCCCGACGGGTTTTTTTCCCAAGAGc > 3:291861/1‑140 (MQ=255)
cGTTGGCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCGGGTCGTC‑GTGGGCTTTTTTTTGTTAGCCCCCACGAGCAACA‑GATGTGGGCCGCCGGTGTGCTGGCAAAAGTTTTGCCCGGCGGTTTATTTTCCCAAGAGc > 3:324306/1‑140 (MQ=255)
ggCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCGGGTCGTC‑GTGGGCTTTTTGTTGTTTTCCCGCACGCGCAACA‑GATGTGGGCCGGCCGGGTGGTGGCAAAAGTGTTGCCCGTCGGGTTATTTTGCAAAAAGCgggg > 1:172972/1‑139 (MQ=255)
ggCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCGGGGCGTC‑GTGGGCGTTTTGTTGTTAGCCCGCACGAGCAACA‑GATGTGGGCCGCCGGTGTGCTGGCAAAAGTGTTGCCCGACGGTTTATTTGCCAAAGAGCGGGt < 7:799165/140‑1 (MQ=255)
ggTTCAGTGTTGGGCTTTCATCAGGTACATCGGGTCGTC‑GTGGGCTTTTTGTTGTTAGCCCGCACGAGCAACA‑GATGTGGGCCGCCGGTGTGCTGGCAAAAGTGTTGCCCGACGGTTTATTTGCCAAAGAGCGGGTGgcg < 7:356202/140‑1 (MQ=255)
ttCAGTGTTGGGCTTTCATCAGGTACATCGGGTCGTC‑GTGGGCTTTTTTTTGTTAGCCCGCACGAGAAACA‑GATGTGGGCCGCCGGTGTGCTGGCAAAATTGTTGCCCGACGGTTTATTTGCCAAATAGCGGGTGgcgcg > 8:194723/1‑139 (MQ=255)
ttCAGTGTTGGGCTTTCATCAGGTACATCGGGTCGGC‑GTGGGCTTTTTGTTGTTAGCCCGCACGAGCAACA‑GATGTGGGCCGCCGGTGTGCTGGCAAAAGTGTTGCCCGACGGTTTATTTGCCAAAGAGCGGGTGGCGCt < 1:205858/140‑1 (MQ=255)
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CAGTGGCCAATGATGGATAAAGCGTTAATGATGACGCACTTCGATGAGATGAATACCGCAGGTTTAAAGCGCGACGAACTTCTCGATTGTGCAATGCGCAGTGAGCAGAGTCGTGATTTCAAACCCTGCGTTGGCAGGTTCAGTGTTGGGCTTTCATCAGGTACATCGGGTCGTC‑GTGGGCTTTTTGTTGTTAGCCCGCACGAGCAACA‑GATGTGGGCCGCCGGTGTGCTGGCAAAAGTGTTGCCCGACGGTTTATTTGCCAAAGAGCGGGTGGCGCT > NZ_CP022686/4905040‑4905317
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
