Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A26 F12 I0 R1
|
131 |
9881.0 |
7547414 |
98.3% |
7419107 |
134.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,860,060 |
T→G |
16.4% |
K122T (AAA→ACA) |
CIW80_RS09255 ← |
YtfJ family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,860,060 | 0 | T | G | 16.4%
| 249.4
/ 17.9
| 126 | K122T (AAA→ACA) | CIW80_RS09255 | YtfJ family protein |
| Reads supporting (aligned to +/- strand): ref base T (7/95); new base G (21/2); total (29/97) |
| Fisher's exact test for biased strand distribution p-value = 7.33e-16 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 127 total aligned reads displayed.
CCGTCCTTTGCCCACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTT > NZ_CP022686/1859928‑1860199
|
ccGTCCTTTGCCCACTGAAGTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTaagttt > 3:682695/1‑135 (MQ=255)
gTCCTTTGCCCACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTtttttttt > 3:471299/1‑140 (MQ=255)
gTCCTTTGCCCACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTAttttt > 2:633208/1‑138 (MQ=255)
ttGCCCACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGa < 2:845757/138‑1 (MQ=255)
cccACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTTATTTTTTATA‑ttt > 6:838737/1‑138 (MQ=255)
caatgtaTTCGGCAGGCTTTATTCAATAGCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCATTAAAGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTg < 7:719500/132‑1 (MQ=255)
cACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTTGA‑ttttt > 1:280189/1‑137 (MQ=255)
cACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGACAGCGGCGT‑TTATTTTTTTCGA‑TTTTg < 1:103902/138‑1 (MQ=255)
cACTGAATTCGCCCGGCTTTATTAAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACTGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑cc < 3:101784/140‑1 (MQ=255)
tGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTTTTTTTTTAGGA‑TTTTG‑cc > 5:156220/1‑138 (MQ=255)
gtcTTTATTCACTACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCATGCAACGCGTCCCAGACCATTGCCGTAAATAACGAATTGCGACCACGGATAGAGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATa < 5:176347/136‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCATGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCTCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATa < 1:675591/138‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATTGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATa < 5:596399/138‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATa < 6:87942/138‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATa < 1:840783/138‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATa < 7:254213/138‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATa < 7:345431/138‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGc < 3:434912/140‑1 (MQ=255)
gCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTATTTTTTTAGA‑TTTTT‑GCAACGACAAAATaa > 8:130996/1‑137 (MQ=255)
gCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCAAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAg < 7:235619/138‑1 (MQ=255)
cTTTATTCAATACCAGAATGGTTTAACTCTGCTCCGGCATTTGCAAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTT‑CCAACGACAAAATAGc < 1:61430/138‑1 (MQ=255)
cTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATTACTAATTGCGCCCACGGATAGCGGCGT‑TTAATTTTTTCTA‑TTTTG‑CCAACGACAAAATAGc < 2:845119/138‑1 (MQ=255)
cTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGc < 1:6605/138‑1 (MQ=255)
cTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGc < 5:139984/138‑1 (MQ=255)
cTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCa < 3:505444/140‑1 (MQ=255)
tCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTAc < 1:539976/138‑1 (MQ=255)
tACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GGATTTTTTTAGA‑TTTTT‑ACAACCACAAAATAGACACTAACACAGa > 3:908900/1‑140 (MQ=255)
aCCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAg < 2:490840/138‑1 (MQ=255)
ccAGAATGGTTGACCTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATCGAGGCGT‑ATTTTATTTAATA‑TTTTGAGCAAC‑ACAAAAAATCAAGTACaaaaaa > 2:128869/1‑136 (MQ=255)
ccAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTTGA‑TTTTT‑GGAACGACAAAATAGGCAGTACCAAAGa > 7:193889/1‑138 (MQ=255)
ccAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTTGA‑TTTTT‑CAAACCACAAAATAGACCGTACCaaaaa > 8:107357/1‑136 (MQ=255)
cctattGGTTGAACTCTGCTCCGGCAATTTCCAGGCAACGCGTCCCATACCATTGCAGTCAATAACGAATTGCGCCCACGGATAGCGTCGT‑TTATGTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGAt < 8:677331/133‑1 (MQ=255)
cAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGTCAACTCGTCCCAGTCCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑ATTTG‑CCAACGACAAAATAGCCAGTACCAAAGAt < 7:167859/138‑1 (MQ=255)
cAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACAATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGAt < 8:677334/138‑1 (MQ=255)
gAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GGTTTTTTTTGGG‑TTTGT‑CCCAAGACAAATAATCCAGGACCAAAAATgtgt > 3:56578/1‑137 (MQ=255)
ggTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGcatc < 6:439733/138‑1 (MQ=255)
gTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGcatca < 8:878049/138‑1 (MQ=255)
gTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGcatca < 2:402812/138‑1 (MQ=255)
gTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTA‑TTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 4:99696/140‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGcatcat < 8:194160/138‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGcatcat < 5:425081/138‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGcatcat < 8:772071/138‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 3:23032/140‑1 (MQ=255)
tGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TGATTTTTTTTTA‑TTTTG‑GCAACCACAAAAAATACAATACCAAAAAAGGcataaac > 8:344519/1‑134 (MQ=255)
taaCTCTGCTCCGGCAATTGCCATGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgt < 3:806769/139‑1 (MQ=255)
taaCTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 5:357775/137‑1 (MQ=255)
taaCTCTGCTCCGGCAATTGCCAGGCAACGCGGCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 8:889543/137‑1 (MQ=255)
gAACTCTGCTCCGGCAATTGCCATGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 2:717396/138‑1 (MQ=255)
gAACTCTGCTCCGGCAATTGCCAGGCCACGCGTCCCACACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGG‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGCTGGCATCATCGgt < 4:884771/140‑1 (MQ=255)
gAACTCTGCTCCGGCAATTGCCAGGCACAGCGTCCCAGCCCATTGCAGGAACTAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgt < 3:534492/140‑1 (MQ=255)
gAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 1:295576/138‑1 (MQ=255)
gAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgt < 3:56098/140‑1 (MQ=255)
gAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTAGA‑TTTTG‑GCCCCGACAAAAAAGCCAGTACCAAATATGGGAGCATCggg > 4:935567/1‑139 (MQ=255)
gAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAAATGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTTGA‑TTTTT‑CCAACGCAAAAATATGCAGGAACAAAGATGGcagtaagg > 2:152514/1‑132 (MQ=255)
gAACTATGCTCCTGCAATTGCCAGGCCACGCGTCCAAGACCATTGACGTAAATAACGAATTGCGCCCACGGATAGCGGAGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 8:723568/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCTGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgtg < 8:626932/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgtg < 2:356034/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgtg < 8:546806/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 4:399307/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 3:553370/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 3:857783/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGGCCCAGACCATTGCCGTCAATATCGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgtg < 6:558315/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGGCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgtg < 6:210380/138‑1 (MQ=255)
ctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 5:630623/138‑1 (MQ=255)
ctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 1:52646/138‑1 (MQ=255)
ctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 2:722764/138‑1 (MQ=255)
ctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 5:894190/138‑1 (MQ=255)
ctGCTCCGGAAATTGCCAGGCTACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACGAAAGATGGCATCATCGGTGtt < 6:713180/138‑1 (MQ=255)
ctGCGCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGAGGGCATCATCGGTGtt < 6:889157/138‑1 (MQ=255)
cTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTcac < 1:701775/138‑1 (MQ=255)
cTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTcac < 7:710073/138‑1 (MQ=255)
cTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTTGA‑GTTTT‑GAAAAGACTAAAAAACCAAAAACAAAGGAAGCATAATAGGTGTTtac > 7:272573/1‑138 (MQ=255)
cTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTAGA‑TTTTT‑GCAACGACAAAAAAGCCAGGTACAAAGATGGCATCATAGGTGTTGACaa > 4:2701/1‑140 (MQ=255)
ccGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACaa < 1:51293/138‑1 (MQ=255)
ccGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTAGAGTTTTG‑CC‑ACCACAAAAAAACCAGGACCAAACAAGGCAGCATAGGTGttgaaaa > 6:797749/1‑133 (MQ=255)
ccGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTTGA‑TTTTT‑GCAACGCCAAAATAGGCACTTGCAAAGATGGGATTATGGGTGGTGACaa > 2:869162/1‑138 (MQ=255)
gCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GGTTTTTTTTAGA‑TTTTT‑GCAACACAAAAATATACAGTTAAAAAGATGGCCTGATCTGTGGTGACaaatgtg > 4:959915/1‑135 (MQ=255)
cAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCAAAATAgt < 6:381176/138‑1 (MQ=255)
aaTTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAgtg < 2:263069/138‑1 (MQ=255)
ccAGGTAACGCGTCCCATACCATTGCCGTAAATAAAGAATTGCGCCATCGGATAGCGGCGT‑TTATTTTTTTGTA‑TTTTG‑CCAACGACAATATAGCCAGTACCATAGATGGAATAATCGGTGTTCACAATAgtggtgtg < 2:225554/138‑3 (MQ=255)
cgTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTTTTTTTTTAGT‑TTTTT‑GCCACGACAAAATATCCAGTACCAAAAATTGCAAAAAAGGGGTTGAAAAAAATGGTGGGGGGAAAACgc > 8:515339/1‑137 (MQ=255)
cgTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTTGA‑TTTTT‑TAAACGACAAAAAAGACAGTAACAAAAATGGCCTGATCGGGGTTGACCAAATTGGTTGGCGGGAAACGa > 6:43082/1‑138 (MQ=255)
aGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGa < 3:149186/140‑1 (MQ=255)
tGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGt < 7:472856/138‑1 (MQ=255)
ccGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGttt < 5:43082/138‑1 (MQ=255)
ccGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTATTTTTTTGGA‑TTTTT‑GCAAACCCAAAATATCCAGTACCAAAGATTGCATAATCGGGGTTGAACAAAATTGTGGGGGGAAAAAGAGCCGGCGAAAAGttt > 2:761445/1‑138 (MQ=255)
aCGAATTGCGCCCACGGATCGCGCCGT‑TTATTTTTTTCGA‑TTTTT‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGGTTGCCGCTTCa < 8:891594/138‑1 (MQ=255)
aCGAATTGCGCCCACGGATAGAGGCGA‑TTATTTTTTTCGA‑TTTTT‑CCAACGACAAAATAGCCAGTACCAACGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAACACGATCCTGCGAAAAGTTTGCCGCTTCa < 6:674429/138‑1 (MQ=255)
gAATTGCGCCCACGGATAGCGTCTT‑TTATATTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGGTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAAc < 5:681553/138‑1 (MQ=255)
aTTTCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑ACAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCg < 5:874394/138‑1 (MQ=255)
aTTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTCCCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCg < 6:85529/138‑1 (MQ=255)
aTTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCg < 5:795125/138‑1 (MQ=255)
aTTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCg < 5:67643/138‑1 (MQ=255)
aTTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCg < 5:453633/138‑1 (MQ=255)
aTTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCg < 1:247155/138‑1 (MQ=255)
aTTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCt < 4:340745/140‑1 (MQ=255)
aTTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTGCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCg < 8:101753/138‑1 (MQ=255)
cccACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTttaatt < 3:501626/140‑1 (MQ=255)
gATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACa < 7:515339/138‑1 (MQ=255)
ttATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCttttt < 3:79486/140‑1 (MQ=255)
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CCGTCCTTTGCCCACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGA‑TTTTG‑CCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTT > NZ_CP022686/1859928‑1860199
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
