Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A26 F2 I0 R1
|
64 |
5414.3 |
5027226 |
98.2% |
4936735 |
134.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,860,077 |
G→T |
13.9% |
G116G (GGC→GGA) |
CIW80_RS09255 ← |
YtfJ family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,860,077 | 0 | G | T | 13.9%
| 212.1
/ 2.6
| 90 | G116G (GGC→GGA) | CIW80_RS09255 | YtfJ family protein |
| Reads supporting (aligned to +/- strand): ref base G (7/67); new base T (14/2); total (21/69) |
| Fisher's exact test for biased strand distribution p-value = 1.29e-09 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACG > NZ_CP022686/1859943‑1860214
|
tGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAAc < 6:272635/140‑1 (MQ=255)
gAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACg < 5:509786/140‑1 (MQ=255)
cGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTTCTCCGGCAATTGCCAGGCAACGCGTCCCAGACAATTGCCGTCCATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACaaa < 5:315872/140‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATa < 3:136243/138‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATa < 3:45757/138‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATa < 4:291882/138‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATa < 4:366315/138‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATa < 2:128653/138‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAAGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATa < 8:74179/138‑1 (MQ=255)
gCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑AGA‑TTTTTCCAAAGACAAAAAAGcc > 6:558084/1‑140 (MQ=255)
gCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTATTTTTTTATCA‑TTTTGCAACCAACaaaaat > 8:427479/1‑136 (MQ=255)
cTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGc < 2:32237/138‑1 (MQ=255)
cTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCa < 6:533564/140‑1 (MQ=255)
cTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGGCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGc < 4:242202/138‑1 (MQ=255)
cTTTATTCAATACCAGAATGGTTGAACTCTGATCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATATCGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGc < 4:584808/138‑1 (MQ=255)
tttATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTTTTTTTTT‑AGA‑TTTTTGCCACCCCAAAAAAGcc > 3:581011/1‑138 (MQ=255)
tttATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTATTTTTTT‑ATA‑TTTTTGCAAACAAAAAAAAGcc > 7:543099/1‑138 (MQ=255)
ttCAATACCAGAATGGTTGAACTCTGCTCCGTCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCACCGACAAAATAGCCAGTa < 3:594459/138‑1 (MQ=255)
ttCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCAGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTAcc < 5:176084/140‑1 (MQ=255)
cAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTAcc < 7:352904/138‑1 (MQ=255)
aTACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCaa < 3:518671/138‑1 (MQ=255)
tACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTTATGTTTTT‑‑GA‑TTTTTGGACAGAACAAATAGCCCGTACCACAgt > 6:199419/1‑139 (MQ=255)
tACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTT‑AGA‑TTTTTGCCACGCCCAAAAAACCAGGACCaaaaa > 5:448959/1‑138 (MQ=255)
ccAGAATGGTTGCACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGTCGT‑GTAATTTTTT‑CGA‑ATTTGCCAAACACCACATAGCCAGAAACaaaaa > 2:18299/1‑136 (MQ=255)
ccAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTCCAAAAGa > 2:452974/1‑138 (MQ=255)
ccAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GGTTTTTTTT‑TTT‑TTTTTCGAAAGACAAAATATCCAGTAACaaaaa > 7:170709/1‑136 (MQ=255)
ccAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGAGCCCACGGATAGCTGCGT‑GTATTTTTTT‑AGA‑TTTTTTCAACTACAAAATAAACAGTACCaaaaa > 2:255919/1‑136 (MQ=255)
aTGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTATTTTTTT‑GGATTTTTGCCAA‑GACAAAAAAGCCAGTACCAAACAAGGcc > 3:137466/1‑137 (MQ=255)
aTGGTTGAACTCTGCTCCGGCAATAGCCAGGCACCGCGTCCCAGCCCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTATTTTTTT‑AGA‑ATTTTCAGACCAAAAAATAGCCCATAACAAAACTGGcc > 4:483473/1‑137 (MQ=255)
ggTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGcatcat < 6:97099/140‑1 (MQ=255)
ggTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGcatc < 1:296393/138‑1 (MQ=255)
ggTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGcatc < 2:465541/138‑1 (MQ=255)
ggTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTAAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGcatc < 4:554619/138‑1 (MQ=255)
ggTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGGCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGcatc < 3:253745/138‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATACCGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 5:35393/140‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGcatcat < 4:494070/138‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGGCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGcatcat < 1:530941/138‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGGCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGcatcat < 3:327725/138‑1 (MQ=255)
taaCTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 8:207536/137‑1 (MQ=255)
gatctctGCTCCGGAAATTGCCAGGAAACGGGTCCCTGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGACAACGACAAAATATCCAGTACCAAAGATGGCATCATCg < 7:197507/135‑1 (MQ=255)
gAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCATACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTTCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 2:375801/138‑1 (MQ=255)
aCTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTATTTTTTT‑CGA‑TTTTTGCAACGACAAAATAGCCCGTACCAAAAATGGcctcaaagtt > 2:25916/1‑133 (MQ=255)
ctctGCTCCGGCAATTGCCCGGCAACGCGTCCCAGACCATTGCCGTCAATAACTCATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TGTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgtg < 4:410222/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTTCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCACCGACAAAATAGCCAGTACCAAAGATGGCATCATCGgtg < 2:387065/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgtg < 1:321256/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgtg < 1:38085/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgtg < 3:205883/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgtg < 4:419780/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgtg < 4:309993/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgtg < 1:284527/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgtg < 1:104118/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 5:558084/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 6:572612/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTAAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgtg < 1:451780/138‑1 (MQ=255)
ctctGCTACGGGAATTGCCAGGCAACTCGTCCCAGACCATTGCCGTCAATAACTAATTGCGCCCACGGTTAGCGTCGT‑GTATTTTTTT‑GGA‑TTTTGCCAACGACAAATTAGCCAGTACCAAAGATGGGATCATCGGTGtt < 6:592898/140‑1 (MQ=255)
ctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 1:490730/138‑1 (MQ=255)
ctGCTCCGGCAATTGCCAGGCAACGCGACCCATACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTca < 5:144185/140‑1 (MQ=255)
cTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACaa < 5:233643/140‑1 (MQ=255)
cTCCGGCAATTGCCAGGCAACGCGTACCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACaa < 5:405222/140‑1 (MQ=255)
ccGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTATTTTTTT‑TGA‑TTTTTGGAACGCCAAAATAGCCAGTTCCAAAGATGGCGTCATCGGTGTTGACaa > 2:192982/1‑138 (MQ=255)
gCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAg < 3:93202/138‑1 (MQ=255)
aaTTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAgtggt < 5:21405/140‑1 (MQ=255)
aaTTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAgtg < 1:329339/138‑1 (MQ=255)
aaTTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAgtg < 3:126869/138‑1 (MQ=255)
aaTGGCCAGGCAACGCGTACCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTAT‑CGA‑TTTTGCCAACGCCAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAgag < 8:282462/138‑3 (MQ=255)
aTTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCCCGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAgtgggg < 6:186659/140‑3 (MQ=255)
cccggCAACGCGTCCCCGACCATTGCCGTCAATAACGAAGTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTGCACAATAGTGGTggg < 8:296890/135‑1 (MQ=255)
ccAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTggg < 1:579970/138‑1 (MQ=255)
cAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTT‑TGA‑TTTTGGCAAAGACAAAAAAGCCAGATCCAAAGAAGGCATAATCGGTGGTGCCAAAAAGGGTGGGCGGaa > 2:506619/1‑138 (MQ=255)
cgTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGTTAGCGGCGT‑GTTTTTTTTT‑TGA‑ATTTTTCAACGACAAAATAGCCACAACCAAAGATGGGATCATCGGTGTGTAGAATATTGGGGGGGGGGAAACGa > 4:91451/1‑138 (MQ=255)
cAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTATTTTT‑AGC‑ATTTGCCAACGACAAAATAGCCACTCCCACACAATGCACCCTACGTGTTCACTATAGTGTGGGGCGGCAAAAGAAccac > 2:16326/1‑136 (MQ=255)
aCCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTATTTTTTT‑AGA‑TTTTGACAACGACAAAATAGACAGTACCAAATATGGCATAATCGGGGTTGAAAATAGTGGTGGGGGGTAAACGATACTGGGa > 4:299137/1‑138 (MQ=255)
ttGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTATTTTTTT‑GGG‑TTTTTAAAAACAAAAAATAAGAAATAACAAAAATGGGATAATATGTGTTTCCAAAAATGGTGGGGGGAATAAGATCCTGGGGAAACtt > 6:546697/1‑140 (MQ=255)
ccGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTTTTTTTTT‑AGA‑TTTTTCCAACGACAAAAAAGCCAGTACCAAAAATGGGATCAACGGGGTTGAAAAAATTTGTGGGGTGAAAAAGATACAGCGAAAAtttt > 8:507403/1‑138 (MQ=255)
ccGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTT‑GGA‑TTTTTGCAACCACATAAAAACCAGGACCAAAAAAGGCATAAAAGGGGTTGACAAAAGTTGTGGGGGGGAAACGATCGAGGCAAAAGttt > 2:228062/1‑138 (MQ=255)
aCGAATTGCGGCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACATAATAGCCAGTACCAAAGATGGCATCATGGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCa < 8:170709/138‑1 (MQ=255)
aCGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAAc < 5:607701/140‑1 (MQ=255)
gAATTGCGCCCTCGGTTAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCATCGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTTGTGTGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCg < 5:383340/140‑1 (MQ=255)
gAATTGCGCCCACGGTGAGCGGCGT‑TTAATTTTTT‑CGA‑TTTTGCCCTCGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACATTAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCg < 6:604761/140‑1 (MQ=255)
aTTGCGCCCCCGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTTCCAACGACAAAATAGCCAGTACCAAAGATTGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCt < 5:559075/140‑1 (MQ=255)
aTTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCt < 5:543595/140‑1 (MQ=255)
cACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTttaattaa < 6:106736/140‑1 (MQ=255)
atcgcggcgG‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATCGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAg < 1:379795/135‑1 (MQ=255)
aTAGCGTAGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTTTTCACAATAGTGGTGGTCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAg < 1:206362/138‑1 (MQ=255)
ttttt‑CGA‑TTTTGCCAACGACATAATAGCCAGTACCAAAGCTGGCATCATCTGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTttctt < 8:348959/138‑1 (MQ=255)
ttttt‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTttctt < 2:297409/138‑1 (MQ=255)
ttttt‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATAGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCTACCGCTTTAATTAACAGTGAGTTCTTTttctt < 3:436415/138‑1 (MQ=255)
tttt‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGc < 5:189487/140‑1 (MQ=255)
cGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGAc < 6:273328/140‑1 (MQ=255)
cGA‑TTTTGCCAACGAAAAAATAGCCAGAACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGACAACTATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGAc < 6:408866/140‑1 (MQ=255)
gCCAACGACATAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACg < 1:5802/138‑1 (MQ=255)
gCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACg < 4:581011/138‑1 (MQ=255)
gCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACg < 8:4843/138‑1 (MQ=255)
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TGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTT‑CGA‑TTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACG > NZ_CP022686/1859943‑1860214
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
