Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A30 F12 I0 R1
|
192 |
11691.1 |
8856334 |
98.4% |
8714632 |
135.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,860,077 |
G→T |
13.3% |
G116G (GGC→GGA) |
CIW80_RS09255 ← |
YtfJ family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,860,077 | 0 | G | T | 13.3%
| 377.3
/ 15.6
| 151 | G116G (GGC→GGA) | CIW80_RS09255 | YtfJ family protein |
| Reads supporting (aligned to +/- strand): ref base G (7/120); new base T (20/4); total (27/124) |
| Fisher's exact test for biased strand distribution p-value = 1.83e-15 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 159 total aligned reads displayed.
CACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGT‑GGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACGTC > NZ_CP022686/1859940‑1860216
|
cACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGcc < 5:782480/140‑1 (MQ=255)
aCTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGc < 1:182669/138‑1 (MQ=255)
taaTTCGCCCGGCTTTATTCAATACCAGTATGGTTGAACTCTGCGCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGGCGTCTATAACGAATTGCGCCCACGTATAGCGGCGTTTATTTTTTTCGATTTTGCCAACg < 7:631799/139‑1 (MQ=255)
gAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACGATGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGTTAGCGGCGTTTATTTTTTTCGATTTTGCCAACg < 5:478593/140‑1 (MQ=255)
ttCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGTCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTTTTTTTTTTGATTTTTGCAACGACa > 5:143205/1‑140 (MQ=255)
cGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACaaa < 8:402899/140‑1 (MQ=255)
cGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACa < 1:1073111/138‑1 (MQ=255)
gCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACaaaa < 8:303641/140‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATa < 4:739567/138‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGc < 6:1044637/140‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGGTGAACTCTGCGCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATa < 1:1060907/138‑1 (MQ=255)
ggCTTTATTCAATACAAGAATGGTTGAACTCTGCTCCTGCAATTGCCAGGCAACGAGTCCCAGAACATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAAtt < 3:472806/138‑2 (MQ=255)
gCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTTTATTTTTCCCACGCCAAAATAGcc > 7:197178/1‑140 (MQ=255)
cTTTATTCAATACCAGAATGTTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCa < 8:684822/140‑1 (MQ=255)
cTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCa < 7:956058/140‑1 (MQ=255)
tttAATCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAAATGCGCCGACGGATAGCGGCGTGTAGTTTAGTCGATTTAGGGAACGCCAATATAGca > 4:600324/1‑137 (MQ=255)
ttaaaTACCAGAATGTTTGAACTCTGCTCCGGCATTTGCAATGCAACGCGTCCCATACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTAcc < 8:895108/137‑1 (MQ=255)
ttACCAGAATGGTTGAACTCGGCTCCGGCAATTGCCAGGGAACGCGTCCCAGACCCTTGCCGTCAATAACGAATTGCGCCCTCGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCaa < 3:422987/137‑1 (MQ=255)
aTACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCaa < 3:538767/138‑1 (MQ=255)
tACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCAACGGATAGCGGCGTGTTTTTTTTTAGAATTTTGCAACCACAAAAAAGCACCTACCAAAGa > 6:54567/1‑140 (MQ=255)
aCCAGAATGGTTGAACTCTGCTCCGTCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGAt < 7:410124/140‑1 (MQ=255)
aCCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGAt < 7:555810/140‑1 (MQ=255)
aCCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGAt < 7:121673/140‑1 (MQ=255)
ccAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTTTTTTTTTGTATTTTTGCAACCCCAAAAAAACCAGGACCaaaaa > 3:956397/1‑136 (MQ=255)
ccAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTTTTTTTTTATATTTTTAAAACGACAAAAAATCCAGGAACaaaaa > 2:182654/1‑136 (MQ=255)
ccAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTATTTTTTTAGATTTTGGCAACGCCAAAAAAGCCAGTAACaaaca > 1:247507/1‑136 (MQ=255)
ccAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTATTTTTTTTTAGTTATTTAACACTACAAAATAACCAGTAACAAAGa > 1:29586/1‑138 (MQ=255)
ccAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCACACGGATAGCGGCGTTTTTGTTTTTATATTTTTAAAAAAAAAAAAAAACCAGTACCaaata > 4:860495/1‑136 (MQ=255)
cAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTTCCGTAAATAACTAATTGCGTCCACGGATAGCGTGTTTTATTTTTTTGGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATgg < 5:791797/140‑1 (MQ=255)
cAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGAt < 1:12727/138‑1 (MQ=255)
aTGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTATTTTTTTAGATTTTTCCAACCGCAAAATAGACAGTAACAAAGCTgggg > 3:817122/1‑136 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCTGACCATTGACGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGcatcat < 1:101448/138‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGcatcat < 1:364812/138‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGcatcat < 4:288282/138‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGcatcat < 1:891876/138‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGcatcat < 2:108609/138‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 7:905884/140‑1 (MQ=255)
ttGAACTCTGCGCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 5:92392/140‑1 (MQ=255)
tGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTTTTTTTTTTGATTTTTGCAACGACAAAATATACAGGACCAAATATGtcatcaaagg > 8:923978/1‑136 (MQ=255)
gAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 3:928921/138‑1 (MQ=255)
gAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 4:687336/138‑1 (MQ=255)
gAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 4:278865/138‑1 (MQ=255)
ttctGCTCCTGCAATTGCCAGGCAACGCGTCCCAGACCATTCCAGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 7:696692/139‑1 (MQ=255)
ctctGCTCCGGCTATTGCCAGGCAAAGCGTCCCAGACAATTTCCGTCAATAAAGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCAAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 8:827677/140‑1 (MQ=255)
ctctGCTCCGGCATTTGCCTGGCAACGCGTCACAGACCTTTGCCGTAAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTTCCAAAGATGGCATCATCGgtg < 3:446307/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgtg < 4:182159/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgtg < 2:349025/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgtg < 4:571660/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgtg < 2:663745/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgtg < 4:998007/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgtg < 2:835830/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 6:483419/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 5:531681/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAAATGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 6:894381/140‑1 (MQ=255)
ctctGCTCCGGCAAGTGCCAGGCAACGCGTCCCAGACCATTGTCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgtg < 2:696644/138‑1 (MQ=255)
ctctGCTCCGGCAAATGCCAGGCAACGCGGCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgtg < 3:674453/138‑1 (MQ=255)
tctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgtgt < 3:49045/138‑1 (MQ=255)
cttcTCCGTCAATTGCCAGGCAACGCTTCCCAGACCATTGCCGTCATTAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCACCGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTca < 6:335692/137‑1 (MQ=255)
ctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGTCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTca < 5:641367/140‑1 (MQ=255)
tGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTATTTTTTTAGTTTTTTGCAACAAAAAAATATAAAGTAACAAAAATTGCATAATAGGTGttaaa > 6:941351/1‑137 (MQ=255)
cTCCGGCAATTGCCAGGCAACTCGTCCCAGAACATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGGTTTTTTTTAGATTTTTTGAAAGCCAAAAAATCAAGTAACCAAAATAGGATAATCGGTGttatcaa > 7:591485/1‑135 (MQ=255)
tCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTTTTTTTTTCGATTTTGCCAACGCCAAAATAGCCAGTACCAAAGATGGCATCATAGGTGTTgaca > 4:1100516/1‑138 (MQ=255)
gctaTTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCAAGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAgtg < 5:687924/137‑1 (MQ=255)
gCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAg < 3:112039/138‑1 (MQ=255)
aaTTGCCAGGCAACGCGTCCCCGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAgtggt < 5:255141/140‑1 (MQ=255)
tGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAgtggt‑g < 1:310728/138‑1 (MQ=255)
ccAGGCTACGCGGCCAAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGAATTTGCCAACGACATAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGT‑ggg < 2:573701/138‑1 (MQ=255)
ccAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGT‑ggg < 1:54130/138‑1 (MQ=255)
ccAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGT‑GGGCt < 6:296997/140‑1 (MQ=255)
gCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTATTTTTTTCGATTTTTGCAAACACAAAATATCCAGTAACAAAGATTGCATAATCGGGGTTAAAAATTATGGG‑TTGCTGaaa > 8:792609/1‑140 (MQ=255)
cgTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTTGTTTTTTAGATTTTGGCAACGACAAAATATCCCGTACCAAACAAGGCATCCTCGGTGTGGACAATAGTTGT‑GGGGGGACAACGa > 2:1123828/1‑138 (MQ=255)
cgTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTAGATTTTGGCAACGCCAAAAATGCCAGTACCAAATATGGCATCTTCGGTGTTGACAATAGTGGG‑GGGCTGTGAACgg > 4:801497/1‑137 (MQ=255)
cAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGT‑GGGCTGAAAACGATCCTGCg < 5:941351/140‑1 (MQ=255)
tGCCGTCAATATCGAATTGGGCACACGGATAGCGGCGTTTATTTTGTTCGATTTTGCCAAAGACAAAATAGCGAGTACCAAAGATCTCATCATCGGTGTTGACATTAGTGGA‑GGGCTGTAAACGATCCTGCGAAAAGttt < 7:861386/140‑1 (MQ=255)
tGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTTTTTTTTTAGATTTTTGGAAAGACAAAAAAGACACTACCAAAAAAGGCATAAAAGGTGTTTA‑AAAAATGGTGGGGGTGAAAAAGATCATGCGAAAAtttt > 6:719323/1‑140 (MQ=255)
ccttCAATAACGAATTGCTCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCACCGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGT‑GGGCTGAAAACGATCCTGCGAAAAGttt < 1:711843/135‑1 (MQ=255)
ccGTCAATAACGTATTGCGCCCACTGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAATATGGCATCATCGGTGTTGACAATAGTGGT‑GGGCTGAAAACGATCCTGCGAAAAGttt < 3:770234/138‑1 (MQ=255)
tAACGACTTGCGCCGACTGATTGCTGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTTGT‑GTGCTGAAAACGTTCCTGCGAAAAGTTTGCCGCtt < 2:386793/138‑1 (MQ=255)
aaCGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGT‑GGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCaa < 5:561369/140‑1 (MQ=255)
aaCGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGAATTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGT‑GGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTc < 4:2736/138‑1 (MQ=255)
aaCGAATTGCGCCCACGGATAGCGGCGTTTATTTATTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCTGTGTTCACAATAGTGGT‑GGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCaa < 8:316345/140‑1 (MQ=255)
taaTTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGT‑GGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAAc < 3:1127856/137‑1 (MQ=255)
gAATTGCGCCCACGGATAGCGGCTTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGT‑GGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCg < 5:751468/140‑1 (MQ=255)
aatGCGCCCCCCGAAATCGGCGTGTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACAAAAGATGGCATCATCGGTGTTCACAATAGTGGG‑GGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCt < 8:101312/138‑1 (MQ=255)
aTTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGT‑GGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCg < 1:619828/138‑1 (MQ=255)
aTTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATATTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGT‑GGGCTGAAAACGATCCTGCGAAAAGATTGCCGCTTCAACCGCt < 7:132055/140‑1 (MQ=255)
aTTGCGCCCAAGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGACAGTACCAAAGATGTCATCATCGGTGTTCACAATAGTGGT‑GGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCg < 4:951162/138‑1 (MQ=255)
tGCGCCCACGGATAGCGGCGTGTATTTTTTTAGATTTTGCAAACGACAAAAAAGCCATTTACAAAGATGGGAAGAACCGTGGTGACAATTCTTGG‑GGGCTGAAAACGATCCGGCGCAAATGTTGGCGCTTGAACCGCgtt > 8:204500/1‑140 (MQ=255)
cgcCCACGGATAGCGGCGTGTATTTTTTTCGATTTTTCCAACGACAAAATAGCCCGTACCAAAGATGGGCTCATCGGTGTTGACAATATTGGG‑GGGGGGGAAAAGAACCAGCGAAAAGGTTTCCGCATCCACCCCGttaa > 8:242885/1‑140 (MQ=255)
cctcGGTTATCGGCGTTTATTTTTTTCGATTTTTCCACAGACATAATAGCCACTACCAAAGATGGCATCAGATGTGTTCACTATAGTTGT‑GGGCTGAAAACGATCCTGCGAATATTTTGCCGCTTCAACCGCTttaat < 3:396892/135‑1 (MQ=255)
aTAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGT‑GGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAg < 2:577334/138‑1 (MQ=255)
aTAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGT‑GGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAg < 3:623383/138‑1 (MQ=255)
aGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGT‑GGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAg < 7:242885/140‑1 (MQ=255)
tttttCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGT‑GGGCTGAAAACGAGCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTttctt < 3:25462/138‑1 (MQ=255)
tttCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGT‑GGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCg < 3:1100516/138‑1 (MQ=255)
ttttGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGT‑GGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACt < 2:1012044/138‑1 (MQ=255)
gCCAACGACAAAATATCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGG‑GGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACGTc < 7:281942/140‑1 (MQ=255)
gCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGT‑GGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACg < 3:946585/138‑1 (MQ=255)
gCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGT‑GGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACGTc < 8:124288/140‑1 (MQ=255)
gCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGT‑GGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACGTc < 5:235617/140‑1 (MQ=255)
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CACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGT‑GGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACGTC > NZ_CP022686/1859940‑1860216
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
