Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A28 F11 I0 R1
|
246 |
10296.8 |
9866480 |
98.4% |
9708616 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,860,077 |
G→T |
14.1% |
G116G (GGC→GGA) |
CIW80_RS09255 ← |
YtfJ family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,860,077 | 0 | G | T | 14.1%
| 422.8
/ 21.6
| 178 | G116G (GGC→GGA) | CIW80_RS09255 | YtfJ family protein |
| Reads supporting (aligned to +/- strand): ref base G (8/140); new base T (26/3); total (35/143) |
| Fisher's exact test for biased strand distribution p-value = 5.63e-21 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 192 total aligned reads displayed.
CACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATA‑GTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACGTC > NZ_CP022686/1859940‑1860216
|
cACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTTAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGcc < 8:558070/140‑1 (MQ=255)
aCTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACTAATTGCGCCCACGGATAGCGGCG‑T‑GTTTTTTTTTAGATTTTTCCa > 1:1268894/1‑140 (MQ=255)
aaTTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACTAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGa < 3:461617/140‑1 (MQ=255)
cgaccGTCTTTATTAAATTCCAGAATGGTTGAACTCTGCTCCGGCATTTGACATGCAACGAGTCCCAGACAATTTCCGTCAATAACGAATTGCTCCCACTGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACaaa < 4:168181/137‑1 (MQ=255)
gaccGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCATACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACaa < 6:701644/136‑1 (MQ=255)
gCCCTGCTTTATTCAAAACCAGAATGGTTGAACTCTGCTCCGGCAAATGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACaa < 5:694574/138‑1 (MQ=255)
ggCTTTATTCATGAGGAGAATGGTTGAACTCTGCTCCGGCATTTGGCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACTAATTGCGCCCTCGGATATCGGCG‑T‑TTATTTTTTTCGATTTTTCCTACTACAAAATAGc < 2:172893/140‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATa < 5:1169362/138‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATa < 5:380123/138‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATa < 6:1214660/138‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGc < 4:678101/140‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGc < 3:294232/140‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGc < 1:84249/140‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGCTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATa < 6:201163/138‑1 (MQ=255)
gCTTTATTCAATACCAGAATGGGTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAg < 6:1012528/138‑1 (MQ=255)
cTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACTAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCa < 4:243068/140‑1 (MQ=255)
cTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCa < 8:962963/140‑1 (MQ=255)
cTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCa < 1:1029271/140‑1 (MQ=255)
aTTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTAc < 7:155886/140‑1 (MQ=255)
ttCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCTTTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTAcc < 1:722158/140‑1 (MQ=255)
ttCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTa < 5:414842/138‑1 (MQ=255)
ttCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTAcc < 8:375152/140‑1 (MQ=255)
tACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATTACGAATTGCGCCCACGGATAGCGTCG‑T‑GTTTTTTTTTATATTTTTGGAACGAACAAATAGCAAGTatacaaaa > 7:484690/1‑133 (MQ=255)
tACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACTAATAGCGCCCACGGATAGCGGCG‑T‑GTTTTTTTTTAGATTTTTAAAACCACAAAATATCCAGGAACaaatt > 8:932742/1‑138 (MQ=255)
tACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATCGCGGCG‑T‑GGATTTTTTTAGATTTTTGCAACGCCAAAAAAGCCAGGACCAAAGa > 2:290017/1‑140 (MQ=255)
tACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTTTTTTTTTAGATTTTTGCAAAGACAAAAAATCCCGTACCaaaaa > 7:565068/1‑138 (MQ=255)
aCCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGAt < 1:252469/140‑1 (MQ=255)
ccAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGAT‑ATATTTATTACAGTTTTACC‑ACCCCAAAAAATCCACTACCAAAgt > 6:956551/1‑137 (MQ=255)
cAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGAt < 5:147011/138‑1 (MQ=255)
aTGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑GGTTTTTTTTTTATTTTTTGAAACACAAAATAGACAGTACCCAATATgggtgc > 1:1174103/1‑136 (MQ=255)
tGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑GTATTTTTTTGGATTTTTCCAACCACCAAATATCCAGTACCCAAGATGGcatca > 2:1003078/1‑140 (MQ=255)
ggTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACTAAATAGCCAGTACCAAAGATGGcatc < 5:253420/138‑1 (MQ=255)
ggTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGcatcat < 8:27228/140‑1 (MQ=255)
ggTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGcatc < 5:807712/138‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGcatcat < 5:1001836/138‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 1:993130/140‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 4:147420/140‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 2:675199/140‑1 (MQ=255)
taaCTCTGCTCCGGCTATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgt < 4:658804/139‑1 (MQ=255)
taaCTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGTCATCATCg < 6:740158/137‑1 (MQ=255)
taaCTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 5:349455/137‑1 (MQ=255)
taaCTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 6:1118488/137‑1 (MQ=255)
taaCTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 6:1067965/137‑1 (MQ=255)
taaCTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgt < 3:66397/139‑1 (MQ=255)
gtcctcaGCTCCTGCAATTGCCAGGCTACGCGTCCCAGACAATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGTCTAAATAGCCAGTACCAAAGATGGCATCATCGgt < 7:667587/137‑1 (MQ=255)
gacctctGCTCCGGAAATAGCCAGTCAAAGCGTCCCAGACCATTGCCGTCAATAACGCATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGAATCATCg < 6:751058/135‑1 (MQ=255)
gAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCTTTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgt < 1:593681/140‑1 (MQ=255)
gAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgt < 4:901364/140‑1 (MQ=255)
gAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCACACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgt < 2:1250375/140‑1 (MQ=255)
aaCTCTGCTCCGGCAATTGCCAGGCAACGCGGCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCgg < 6:755017/138‑1 (MQ=255)
ctctGCTCCGTCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 1:161947/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCTGGCAACGCGTCCCAGAACATTGACGTCAATAACGAATTGAGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 1:338978/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgtg < 5:1054558/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgtg < 5:719450/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 7:978653/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 2:705878/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 3:123339/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 3:391279/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 3:73326/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 8:124285/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 1:406451/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 8:579894/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCAGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgtg < 5:602326/138‑1 (MQ=255)
atctGCTCCGTGAATTGCCAGGCAACGAGTCACAGACCATTGACGTCAATAACGAATTGCTCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 3:1147742/139‑1 (MQ=255)
ctacGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACaa < 8:22166/137‑1 (MQ=255)
cAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATA‑gtgg < 8:453814/140‑1 (MQ=255)
aaTTGCCAGGCAACGCGTCCCAGCCCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑GGTTTTTTTTGGAGTTTGGCAACGACAAAAAATACACTACCAAAGAAGGGCACATCGGTGGTCACaaaattg > 6:837409/1‑133 (MQ=255)
aaTTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATA‑gtggt < 8:158610/140‑1 (MQ=255)
aaTTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATA‑gtggt < 4:1146967/140‑1 (MQ=255)
aTTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑TGGTTTTTTTTTGTTTTTTGCCAA‑GACAAAATAGGCAGTTCCACAGATGGCGTCATAGGGGTTGTCAAttatgggg > 4:1021749/1‑133 (MQ=255)
tGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑GTTTTTTTTTTGATTTTTGCCACGACAAAATAGCCAGGACCAACGAGGGCCTCAGCGGTGGTCTCAAAA‑gtggtg > 6:393163/1‑138 (MQ=255)
ggCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑GTATTTTTTTGGATTTTGGCCACGCCAAAATAGCCACTACCACAGATTGCCTCCTCGGGGTTGAGAATA‑TTGGTggggggaa > 4:872803/1‑135 (MQ=255)
aCGCGGACCAGCCCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATA‑GTGGTGGGCTGAAAACg < 3:893873/140‑1 (MQ=255)
ttGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑GTATTTTTTTAGATTTTTACAACGACAAAATAGCCAGTACCAAAGATTGGATACTAGGTGTTGACAATA‑GTTGGGGGGTGAAAACGAGCCGGCGAAAACtt > 2:951998/1‑140 (MQ=255)
ttGCCGTCAATAACGAATTGCACCCACGGATAGCGGCG‑T‑GTTTTTTTTTAGATTTTGCCAACGCCAAAAAAGACAATACCAAATATTGGAGAATCGGTGGTGACAATA‑GTTGTGGGGTGAAAACGCTCCTGCGAAAAAtt > 2:740635/1‑140 (MQ=255)
tGCCGTCAATACCGAATTGCGCCCACCTATAGCGGAG‑T‑TTATTTTTTTCGATTTTGCCAACGAGTATATAGCCAGTTCCAAAGATGGCATCATCGGTGTTCACAATA‑GTGTTGGGCTGATAACGATCCTGCGAAAAGttt < 4:338253/140‑1 (MQ=255)
gCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATA‑GTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTg < 4:410483/140‑1 (MQ=255)
aaCTAATTGCGCCCACGGATAGCGGTG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATA‑GTGGTTGGCGGAAAACGATCATGCGAAAAGTTTGCCGCTTCaa < 2:1042344/140‑1 (MQ=255)
aaCGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATA‑GTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCaa < 2:652471/140‑1 (MQ=255)
aTTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATA‑GTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCt < 8:300978/140‑1 (MQ=255)
tGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTAGATTTTTGCAAAGACAAAATAGCCAGTTACCAAGATGTCGTAATCGGTGTTAACAATA‑GTGGTGGGTTGAAAACTCTCCTTCGAAAATTTTTCAGCATCaaacacatt > 8:1073065/1‑133 (MQ=255)
tGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTAGATTTTTACAACGACAAAATATCCATTAACAACGATGGGCTGATCGGTTTTGACAATA‑ATGGTGGGCTGAAAACTATCCTTCGGAAATTTTGCCGCTTaaaaccgatt > 8:501527/1‑133 (MQ=255)
cgcCCACGGATAGCGGCG‑T‑GTTTTTTTTTAGATTTTTTCAAAGACAAAAAAGGCAGTACCAAAGATGGGATAATAGGTGTTGACAATATGTGGGGGGTGGCAAAC‑TTACGGCGAAAAATTTTCCGGATGAACCGcggtat > 4:749868/1‑135 (MQ=255)
gcCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATA‑GTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTttaat < 4:921825/140‑1 (MQ=255)
ccACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATA‑GTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTttaatta < 3:950682/140‑1 (MQ=255)
cGGAGAGCGGCG‑T‑TTAGTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATA‑GTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTttaattaa < 5:925146/138‑1 (MQ=255)
atatCGGCG‑T‑TTATTTTTTTCGATTTTGCCACCGACAAAATAGACAGTACCAAAGCTGGCATCATCGGTGTTCACAATA‑GTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTg < 8:678601/140‑1 (MQ=255)
aTAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCACCGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTGCACAATA‑GTGGGGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTg < 1:572613/140‑1 (MQ=255)
aTAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATA‑GTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTg < 1:1044136/140‑1 (MQ=255)
aGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGACAGTACCAAAGATGGCATCATCGGTGTTCACAATA‑GTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAg < 4:1111525/140‑1 (MQ=255)
tttttCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATTGCATCATCGGTGTTCACAATA‑GTGGTGTGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCg < 2:313637/140‑1 (MQ=255)
tttttCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATA‑GTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCg < 2:234196/140‑1 (MQ=255)
ttttgCGATTTTGCCAACGCCAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATA‑GTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCg < 3:959303/140‑1 (MQ=255)
ttttCGATTTAGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATA‑GTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGc < 2:535708/140‑1 (MQ=255)
gATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATA‑GTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACt < 7:27817/140‑1 (MQ=255)
gCCAACGACAAAATAGCCAGTACCACAGATGGCATCATCGGTGTTCACAATA‑GTGGTTGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACGTc < 3:1060834/140‑1 (MQ=255)
gCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATA‑GTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACg < 5:327976/138‑1 (MQ=255)
gCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATA‑GTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACg < 5:661398/138‑1 (MQ=255)
gCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATA‑GTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACGTc < 7:1120390/140‑1 (MQ=255)
gCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATA‑GTGGTGGGCTGAAAACGATCCTGCGAAAAGATTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACGTc < 3:420612/140‑1 (MQ=255)
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CACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCG‑T‑TTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATA‑GTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACGTC > NZ_CP022686/1859940‑1860216
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
