Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A26 F12 I0 R1
|
131 |
9881.0 |
7547414 |
98.3% |
7419107 |
134.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,860,077 |
G→T |
14.8% |
G116G (GGC→GGA) |
CIW80_RS09255 ← |
YtfJ family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,860,077 | 0 | G | T | 14.8%
| 289.2
/ 13.6
| 122 | G116G (GGC→GGA) | CIW80_RS09255 | YtfJ family protein |
| Reads supporting (aligned to +/- strand): ref base G (5/96); new base T (18/3); total (23/99) |
| Fisher's exact test for biased strand distribution p-value = 2.59e-14 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 133 total aligned reads displayed.
CACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACGTC > NZ_CP022686/1859940‑1860216
|
caatgtaTTCGGCAGGCTTTATTCAATAGCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCATTAAAGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTg < 7:719500/132‑1 (MQ=255)
cACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGACAGCGGCGT‑TTATTTTTTTCGATTTTg < 1:103902/138‑1 (MQ=255)
cACTGAATTCGCCCGGCTTTATTAAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACTGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑cc < 3:101784/140‑1 (MQ=255)
tGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTTTTTTTTTAGGATTTTG‑cc > 5:156220/1‑138 (MQ=255)
aaTTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAAc < 2:826749/138‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCATGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCTCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATa < 1:675591/138‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATTGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATa < 5:596399/138‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATa < 7:254213/138‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATa < 7:345431/138‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATa < 6:87942/138‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATa < 8:331715/138‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCACACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGc < 3:434913/140‑1 (MQ=255)
ggCTTTATTAAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGAGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATa < 6:833079/138‑1 (MQ=255)
gCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTATTTTTTTAGATTTTT‑GCAACGACAAAATaa > 8:130996/1‑137 (MQ=255)
gCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCAAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAg < 7:235619/138‑1 (MQ=255)
cTTTATTCAATACCAGAATGGTTTAACTCTGCTCCGGCATTTGCAAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTT‑CCAACGACAAAATAGc < 1:61430/138‑1 (MQ=255)
cTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGc < 5:139984/138‑1 (MQ=255)
cTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGc < 1:6605/138‑1 (MQ=255)
cTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCa < 3:505444/140‑1 (MQ=255)
tttATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTAGATTTTT‑ACAACGACAAAAAAGcc > 1:369290/1‑138 (MQ=255)
tCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑Ac < 1:539976/138‑1 (MQ=255)
tACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GGATTTTTTTAGATTTTT‑ACAACCACAAAATAGACACT‑AACACAGa > 3:908900/1‑140 (MQ=255)
aCCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAg < 2:490840/138‑1 (MQ=255)
ccAGAATGGTTGACCTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATCGAGGCGT‑ATTTTATTTAATATTTTGAGCAAC‑ACAAAAAATCAAGT‑ACaaaaaa > 2:128869/1‑136 (MQ=255)
ccAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTTGATTTTT‑CAAACCACAAAATAGACCGT‑ACCaaaaa > 8:107357/1‑136 (MQ=255)
ccAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTAGAATTTT‑CCAACAACCAAAAAGACCGTAACCaaaa > 5:109974/1‑137 (MQ=255)
cAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGTCAACTCGTCCCAGTCCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGAATTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGAt < 7:167859/138‑1 (MQ=255)
cAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACAATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGAt < 8:677334/138‑1 (MQ=255)
gAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GGTTTTTTTTGGGTTTGT‑CCCAAGACAAATAATCCAGG‑ACCAAAAATgtgt > 3:56578/1‑137 (MQ=255)
aTGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTGGATTTTT‑GCCACGAACAAATAGCCAGT‑AACAAAGATTGcg > 1:904936/1‑137 (MQ=255)
ggTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGcatc < 7:107357/138‑1 (MQ=255)
ggTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGcatc < 6:439733/138‑1 (MQ=255)
gTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGcatca < 2:402812/138‑1 (MQ=255)
gTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGcatca < 8:878049/138‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCTGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCg < 3:542930/140‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGcatcat < 8:772071/138‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGcatcat < 5:425081/138‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCg < 3:23032/140‑1 (MQ=255)
tGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TGATTTTTTTTTATTTTG‑GCAACCACAAAAAATACAAT‑ACCAAAAAAGGcataaac > 8:344519/1‑134 (MQ=255)
taaCTCTGCTCCGGCAATTGCCAGGCAACTCGTCCCAGCCCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCg < 2:553157/137‑1 (MQ=255)
taaCTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCg < 5:357775/137‑1 (MQ=255)
taaCTCTGCTCCGGCAATTGCCAGGCAACGCGGCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCg < 8:889543/137‑1 (MQ=255)
gAACTCTGCTCCGGCAATTGCCAGGCCACGCGTCCCACACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGG‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGCTGGCATCATCGgt < 4:884771/140‑1 (MQ=255)
gAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCg < 1:295576/138‑1 (MQ=255)
gAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTAGATTTTG‑GCCCCGACAAAAAAGCCAGT‑ACCAAATATGGGAGCATCggg > 4:935567/1‑139 (MQ=255)
gAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAAATGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTTGATTTTT‑CCAACGCAAAAATATGCAGG‑AACAAAGATGGcagtaagg > 2:152514/1‑132 (MQ=255)
gAACTATGCTCCTGCAATTGCCAGGCCACGCGTCCAAGACCATTGACGTAAATAACGAATTGCGCCCACGGATAGCGGAGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCg < 8:723568/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCTGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGgtg < 8:626932/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCTGCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGgtg < 5:239352/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGgtg < 8:546806/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGgtg < 2:231261/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGgtg < 2:356034/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGgtg < 8:104606/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGtt < 3:86796/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGtt < 3:857783/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGtt < 3:553370/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGGCCCAGACCATTGCCGTCAATATCGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGgtg < 6:558315/138‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGGCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGgtg < 7:241449/138‑1 (MQ=255)
ctctGCTCCGGCAATTGACAGGCAACGCGTCCCAGACCATTGCCGTAAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGgtg < 2:916636/138‑1 (MQ=255)
ctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGtt < 5:894190/138‑1 (MQ=255)
ctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGtt < 2:722764/138‑1 (MQ=255)
ctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGtt < 1:52646/138‑1 (MQ=255)
ctGCTCCGGAAATTGCCAGGCTACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACGAAAGATGGCATCATCGGTGtt < 6:713180/138‑1 (MQ=255)
cTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGTTcac < 1:701775/138‑1 (MQ=255)
cTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGTTcac < 7:710073/138‑1 (MQ=255)
cTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTAGATTTTT‑GCAACGACAAAAAAGCCAGG‑TACAAAGATGGCATCATAGGTGTTGACaa > 4:2701/1‑140 (MQ=255)
ccGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTTGATTTTT‑GCAACGCCAAAATAGGCACT‑TGCAAAGATGGGATTATGGGTGGTGACaa > 2:869162/1‑138 (MQ=255)
ccGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTGGATTTTT‑GCCACGACAAAATATCCAGT‑AACAAAGAATGGAGCAGCGGTGttgtcaa > 6:156689/1‑133 (MQ=255)
gCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GGTTTTTTTTAGATTTTT‑GCAACACAAAAATATACAGT‑TAAAAAGATGGCCTGATCTGTGGTGACaaatgtg > 4:959915/1‑135 (MQ=255)
cAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGTTCAAAATAgt < 6:381176/138‑1 (MQ=255)
aaTTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGTTCACAATAgtg < 2:263069/138‑1 (MQ=255)
tGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGC‑ACCAAAGATGGCATCATCGGTGTTCACAATAgtggtg < 5:459309/138‑1 (MQ=255)
cgTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTTTTTTTTTAGTTTTTT‑GCCACGACAAAATATCCAGT‑ACCAAAAATTGCAAAAAAGGGGTTGAAAAAAATGGTGGGGGGAAAACgc > 8:515339/1‑137 (MQ=255)
cgTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATc < 3:79371/140‑1 (MQ=255)
cgTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTTTTTTTTTTGATTTTT‑TAAACGACAAAAAAGACAGT‑AACAAAAATGGCCTGATCGGGGTTGACCAAATTGGTTGGCGGGAAACGa > 6:43082/1‑138 (MQ=255)
aGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGa < 3:149186/140‑1 (MQ=255)
tGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGt < 7:472856/138‑1 (MQ=255)
ccGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑GTATTTTTTTGGATTTTT‑GCAAACCCAAAATATCCAGT‑ACCAAAGATTGCATAATCGGGGTTGAACAAAATTGTGGGGGGAAAAAGAGCCGGCGAAAAGttt > 2:761445/1‑138 (MQ=255)
aCGAATTGCGCCCACGGATCGCGCCGT‑TTATTTTTTTCGATTTTT‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGGTTGCCGCTTCa < 8:891594/138‑1 (MQ=255)
aCGAATTGCGCCCACGGATAGAGGCGA‑TTATTTTTTTCGATTTTT‑CCAACGACAAAATAGCCAGT‑ACCAACGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAACACGATCCTGCGAAAAGTTTGCCGCTTCa < 6:674429/138‑1 (MQ=255)
gAATTGCGCCCACGGATAGCGTCTT‑TTATATTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGGTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAAc < 5:681553/138‑1 (MQ=255)
gAATTGAGCCCACGGATCGCGGCTG‑TTATTTTTTTCGATTTTG‑CCAACGACAAATTAGCCAGA‑ACCAAACATGGCATCATCGGTGTTCAAAATAGTGGTGGGCTGAAAACGACCCTGCGAAAAGTTTGCCGCTTCAAc < 5:68391/138‑1 (MQ=255)
aTTTCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑ACAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCg < 5:874394/138‑1 (MQ=255)
aTTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑CCCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCg < 6:85529/138‑1 (MQ=255)
aTTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCg < 1:247155/138‑1 (MQ=255)
aTTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCg < 5:67643/138‑1 (MQ=255)
aTTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCg < 5:453633/138‑1 (MQ=255)
aTTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCt < 4:340745/140‑1 (MQ=255)
cccACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTttaatt < 3:501626/140‑1 (MQ=255)
ggATAGCGGAGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAAc < 8:673293/138‑1 (MQ=255)
gATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACa < 7:515339/138‑1 (MQ=255)
ttATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCttttt < 3:79486/140‑1 (MQ=255)
tttCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCa < 4:700303/140‑1 (MQ=255)
gATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGa < 7:130996/138‑1 (MQ=255)
g‑CCACCGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACGTc < 4:371512/140‑1 (MQ=255)
g‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACg < 2:902414/138‑1 (MQ=255)
g‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACGTc < 4:532575/140‑1 (MQ=255)
g‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACGTc < 4:68813/140‑1 (MQ=255)
g‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTAAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACg < 7:401539/138‑1 (MQ=255)
g‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGTTCACAATAGTGGCGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACGTc < 3:541436/140‑1 (MQ=255)
|
CACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGT‑TTATTTTTTTCGATTTTG‑CCAACGACAAAATAGCCAGT‑ACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACGTC > NZ_CP022686/1859940‑1860216
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
