Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A29 F11 I0 R1
|
249 |
11230.8 |
10274356 |
98.4% |
10109966 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,860,077 |
G→T |
18.3% |
G116G (GGC→GGA) |
CIW80_RS09255 ← |
YtfJ family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,860,077 | 0 | G | T | 18.3%
| 360.0
/ 23.9
| 175 | G116G (GGC→GGA) | CIW80_RS09255 | YtfJ family protein |
| Reads supporting (aligned to +/- strand): ref base G (18/120); new base T (33/3); total (52/123) |
| Fisher's exact test for biased strand distribution p-value = 3.43e-19 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 187 total aligned reads displayed.
CACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACGTC > NZ_CP022686/1859940‑1860216
|
cACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTg < 4:266073/138‑1 (MQ=255)
cACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTg < 3:1158162/138‑1 (MQ=255)
tGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGAGAGCGGCGGTTTTTTTTTTTGATTTTGGCacc > 7:686661/1‑138 (MQ=255)
gAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACg < 8:74537/140‑1 (MQ=255)
aaTTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGa < 8:1041558/140‑1 (MQ=255)
tCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTATTTTTTTATATTTTTCCcaccacca > 1:68707/1‑138 (MQ=255)
cGCCCGGCTTTTATCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGTCCATTGCCGTCAATCACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACaaa < 5:95035/140‑1 (MQ=255)
cGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGGCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACaaa < 6:1040784/140‑1 (MQ=255)
cGCCAGGCTTTAATCAATCCCAGAATGGATGAACTCTGCGCCGGCAATTGCCAGGCAACTCGGCCCAGACCCTTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACaaa < 8:196044/140‑1 (MQ=255)
cccGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTATTTTTTTAGAATTTTACAACGCCaaaaa > 8:621599/1‑139 (MQ=255)
ccGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTTTTTTTTTTGAATTTTACCACAACaaaaaa > 6:858083/1‑138 (MQ=255)
cGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGAGTCCCAGACCATTGACGTCAATAACGAATTGCTCCCACGGATAGCGGCGTGTTTTTTTTTAGATTTTTGAAACCAAAAAATAg > 5:537398/1‑140 (MQ=255)
ggCTTTATTCAATACCAGAATGTTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGGCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATa < 3:610667/138‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATACCGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGc < 1:1279687/140‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGc < 5:928167/140‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGc < 7:70585/140‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGc < 2:492966/140‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGc < 2:847245/140‑1 (MQ=255)
ggCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTATAATTTGACAAACACaaaaaa > 3:104123/1‑136 (MQ=255)
gCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGGAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGcc < 5:462455/140‑1 (MQ=255)
cTTTATTCAATACCCGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCACAGTCCATTGCCGTCAATAACTAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCa < 7:95012/140‑1 (MQ=255)
cTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCa < 8:144416/140‑1 (MQ=255)
tACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTAGATTTTGCCAACGACAAAATAGGCACTaagaaata > 8:589382/1‑133 (MQ=255)
tACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTTTTTTTTTTTAATTTTACAACGCCAAAAAATCCCAGACCAAAGa > 1:951481/1‑140 (MQ=255)
tACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTTTTTTTTTGGTTTTTTCGAACGACAAAATAGCCAGTACCAAAGa > 8:242932/1‑140 (MQ=255)
tACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTATTTTTTTTCATTTTGGCAAACACAAAAAATCCAGAACaaaaaa > 7:356785/1‑138 (MQ=255)
tACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTATTTTTTTCGATTTTTGGAACGGCAAAATATCCAGTTACAAAGa > 8:295267/1‑140 (MQ=255)
tACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTATTTTTTTAGATTTTTACAACCACAAAATAGCCAGTTCCAAAGa > 2:680798/1‑140 (MQ=255)
tACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGGATTTTTTTAGATTTTTGCAAAGACAAAATAGCCAGTACCAAAGa > 1:1014212/1‑140 (MQ=255)
tACAAGAATGGTTGAACTCTGCTCCGGCAATTGACAGGCAACTCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTATATTTTTATGTTTATGCAAAGAAAAAAAAGAAAATACCAAAGa > 6:500780/1‑140 (MQ=255)
aCCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGAt < 7:490249/140‑1 (MQ=255)
aCCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGGCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGAt < 7:156384/140‑1 (MQ=255)
aCCAGAATGGGTGAACTCTGCTCCGGCAATGGCCAGGCAACGCGTCCCAGACCATGGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGAt < 2:1021539/140‑1 (MQ=255)
ccAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTATTTTTTTAGTATTTTCCAAAGAAAAAAAATCCAGAGACAAAGa > 3:265237/1‑138 (MQ=255)
cataaTGGTTGAACTCTGATACGGCTATTGCCAGGCAACGCGTCCAAGACCATTGCCGTTAATATGGATTTGCTCACAAGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACTACAAAATAGCCAGTACCAATGATgg < 6:272478/137‑1 (MQ=255)
cAGAATGGTTGAACTCTTCTCCTGCACTTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATgg < 1:1205802/140‑1 (MQ=255)
gAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTTTTTTTTTTGATTTTTGGAACGCCAAAAAATCCAGGTGCAAAGaatggg > 5:575719/1‑135 (MQ=255)
aaTGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGcat < 2:1102017/140‑1 (MQ=255)
aaTGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGcat < 6:701772/140‑1 (MQ=255)
gTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTATTTTTTTTGATTTTTCCAACCACAAAAAATACCGTAACAAACATgggaacaga > 5:226245/1‑133 (MQ=255)
gTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGGTTTTTTTTAGTTTTTGACAGAGCCAAAAATTCCAGAACCCAACATGGcgtacag > 7:1201615/1‑134 (MQ=255)
gTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCACACGGATAGCGGCGTGTTTTTTTTTAGATTTTGCACACGAGAAAAAAGCCCTTACCAAAGATGGcagcata > 6:667506/1‑139 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGcatcat < 4:118687/138‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 5:344610/140‑1 (MQ=255)
ttGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 2:327223/140‑1 (MQ=255)
tGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTAGTTTTTTAGATTTTGCCAACCAAAAAAAACACAGTACCAAACATGGcatcaaa > 3:683073/1‑136 (MQ=255)
tGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTATTTTTTTAGATTTTTGCAACGACAAAAAAGACAGGACCAAAAAAGGcctaata > 4:1045465/1‑132 (MQ=255)
taaCTCTTGTCCGGCAATTGCCAGGCAACTCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgt < 8:1191749/139‑1 (MQ=255)
taaCTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 4:1099125/137‑1 (MQ=255)
taaCTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgt < 7:225050/139‑1 (MQ=255)
taaCTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgt < 8:342283/139‑1 (MQ=255)
gAACTCTGCTGCGGAAATAGCCAGGCAACGCGTCCCAGTCCATTGGCGTCAATAACGAATTGAGCCCAGGGATAGCGGGGTTTATTTTTTGAGATTTTGCCAACGACAAAATAGCCTGTTCCTAAGATGGCATAATCGgt < 7:539943/140‑1 (MQ=255)
gAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCg < 3:744463/138‑1 (MQ=255)
gAACTCTGCTCCGGCAATTGCCAGGCAACGCGACCCAGACCATTGCCGTCAATAACTAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgt < 1:1028285/140‑1 (MQ=255)
aCTCTTCTCCGGCAATTGCCAGGCAACGCTTCCCAGACCATTGCCGTCAAAAACGAATTGCGCCCACTTATACCGGCGTTTTATTTTTTAGATTTTAGCAACGACAAAATACCCATTATCATATATGGGATCATCAgt > 4:947205/1‑138 (MQ=255)
ctctGCTCCGTCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 6:634986/140‑1 (MQ=255)
ctctGCTCCGGCAATTGGCAGGCAACGCGGCCCAGACCTTTGCCGTCAATTACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 6:125032/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCCGGCAACGCCTCCCAGACCATAGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTAATTTTTTTCGATTTTGCCCACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 7:271371/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCTGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 2:418685/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 1:742355/140‑1 (MQ=255)
ctctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTATTTTTTTAGGTTTTTGCACCCCCCAAAAAGACACGACCAAAGATGGGATAATCCGGGtt > 5:300867/1‑140 (MQ=255)
ctctGCGCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGgtg < 4:308268/138‑1 (MQ=255)
ctatGCTCCGTCTATTTCCATGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGGTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGtt < 6:15474/137‑1 (MQ=255)
ctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTca < 5:858083/140‑1 (MQ=255)
ctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTca < 5:784436/140‑1 (MQ=255)
ctGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTATTTTTTTAGAATTTGACAACGACAAAAAAACCAGTTACAAAGATGGCATCATCGgtggt > 4:956740/1‑136 (MQ=255)
ctGCTCCGGCAATTGCCAGCCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTca < 2:816931/140‑1 (MQ=255)
tGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTGGATTTTTCGAACCACAAAATACCCAGTTACAAACATTGCATCCTAGGTGTGcac > 5:794846/1‑140 (MQ=255)
tGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTTTTTTTTTTGATTTTTGGAACCAAAAAAAAGACAGTCACAAAGAGGGGATAATAGGGGtttaa > 2:480024/1‑137 (MQ=255)
cTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACaa < 1:42433/140‑1 (MQ=255)
cTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTTTTTTTTTGGTTTTTTGCAACGACAAAATATCCACTACCAAAGATTGGAGCATCGGGGttgagaa > 5:142302/1‑135 (MQ=255)
ccGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTGTTTTTTTTTAGATTTTTACAACGCCAAAAAAGACAGTACCAAAGATGGCATCATCGGGGTTGACaa > 4:337998/1‑138 (MQ=255)
cAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATACCGAATTGCGCCCACGGATAGCGGCGGTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAgt < 4:557619/138‑1 (MQ=255)
aaTTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAgtg < 4:1257100/138‑1 (MQ=255)
tGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTggg < 8:330334/140‑1 (MQ=255)
aCGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATATCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACg < 6:613877/140‑1 (MQ=255)
aaCGAATAGCGCCCACGGATAGCGGCGTTTATTGTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTc < 3:386736/138‑1 (MQ=255)
aCGACTTGCGCCCAAGGATAGCGGCGTTTATTATTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAAc < 7:1017569/140‑1 (MQ=255)
aCGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGAGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAAc < 8:832790/140‑1 (MQ=255)
gAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCg < 2:94273/140‑1 (MQ=255)
gAATTGCGACCACGGATAGCTGCGTTTATTTTGGTCTATTTTTCCAACGAAAAAAGAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGGGGTCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAAc < 4:782698/138‑1 (MQ=255)
caaTTTCGCCCACGCATAGCGGCGTTTATTTTTTTCGATATTGCCAACCACAAAATAGCCAGTACCAAAGCTGGCATCATCGGTGATCACAATAGTGGTGGGCTGAAAACGATCCTTCGAAAAGTTAGCCGCTTCAACCg < 6:472608/139‑1 (MQ=255)
aTTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTGACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCt < 2:891267/140‑1 (MQ=255)
aTTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCt < 2:176593/140‑1 (MQ=255)
tGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCttt < 8:501685/140‑1 (MQ=255)
tGCGCCCACGGATAGCGGCGTTTATTTTTTTAGATTTTTGCAAAGACAAAAAAAACAGTAAAAAAAATGGGAACAAAGGGGTTAAAAAAAATGGTGGGGTGGAAAACATCATTCGGAAAATTTGCCCCGTAAAccccggt > 2:625083/1‑135 (MQ=255)
ggttAGCGGCGTTTATTTTTTTCCTTGTTGCCAACCACAAAATAGCCAGTACCAAAGATGTCATCATCGGTGTTCACAATAGTGGTGGTCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAAc < 4:197835/135‑1 (MQ=255)
aTAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTg < 1:541422/140‑1 (MQ=255)
aTAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTg < 8:356785/140‑1 (MQ=255)
tttttCGATTTTGCCATCGACAATATAGCGATTACCTAAGATGGCATCATCGGTGTTCACAATATTGGTGGGCTGAAAACGATCCTGAGAAAAGTTTGCCGCTTCAACCTCTTTTATTAACAGTGAGTTCTTTTTCTTCg < 7:279026/140‑1 (MQ=255)
tttttCGATTTTGCCAACGACAAAATAGCCCGTACCAAAGATGGCATCATCTGTGTTCACAATAGTTGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCg < 7:947/140‑1 (MQ=255)
ttttCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGc < 2:992793/140‑1 (MQ=255)
tttCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCa < 6:142302/140‑1 (MQ=255)
tttGCCAACGACAAAATAGCCAGTACCAAA‑‑‑GGCATCATCGGTGTTCACAATAGTGGGGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACg < 4:816693/138‑1 (MQ=255)
gCCCACGACAAAATAGCCAGGACCAAAGATGGCATCATCCGTGTTCACAATAGAGGTGCGCTGAAAACGATCCAGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTACCAGTGAGTTCTTTTTCTTCGCAGACTTACGTc < 7:893338/140‑1 (MQ=255)
gCCAACGACAAAATAGCCAGTACCAAAGATGGCATCCTCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACg < 3:1108778/138‑1 (MQ=255)
gCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACg < 3:963771/138‑1 (MQ=255)
gCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACg < 4:428320/138‑1 (MQ=255)
gCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACGTc < 1:434857/140‑1 (MQ=255)
gCCAACGACAAAATAGCCAGTACCAAAGATGGAATTATCGGTGTTCAGAATAGTGGTGGGCTGTAAACGATCCTGCGATAAGTTTGCCGCTTCAACCGGTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACg < 3:699803/138‑1 (MQ=255)
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CACTGAATTCGCCCGGCTTTATTCAATACCAGAATGGTTGAACTCTGCTCCGGCAATTGCCAGGCAACGCGTCCCAGACCATTGCCGTCAATAACGAATTGCGCCCACGGATAGCGGCGTTTATTTTTTTCGATTTTGCCAACGACAAAATAGCCAGTACCAAAGATGGCATCATCGGTGTTCACAATAGTGGTGGGCTGAAAACGATCCTGCGAAAAGTTTGCCGCTTCAACCGCTTTAATTAACAGTGAGTTCTTTTTCTTCGCAGACTTACGTC > NZ_CP022686/1859940‑1860216
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
