Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A28 F2 I0 R1
|
74 |
6379.7 |
5468672 |
98.4% |
5381173 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,049,094 |
G→T |
20.0% |
T254T (ACC→ACA) |
deaD ← |
ATP‑dependent RNA helicase DeaD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,049,094 | 0 | G | T | 20.0%
| 154.2
/ 10.4
| 91 | T254T (ACC→ACA) | deaD | ATP‑dependent RNA helicase DeaD |
| Reads supporting (aligned to +/- strand): ref base G (12/58); new base T (19/2); total (31/60) |
| Fisher's exact test for biased strand distribution p-value = 1.15e-09 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTGAATGCGC > NZ_CP022686/2048957‑2049232
|
aTCAGGATGTCCAGACGACTATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGACTGGTTCATGTCACGGTTCAGGGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTg < 8:295585/138‑1 (MQ=255)
tGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTacgaacg < 2:625938/140‑1 (MQ=255)
tGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTAACCGTTAAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTacgaacg < 1:214602/140‑1 (MQ=255)
cAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTacgaaacaaaa > 2:157106/1‑134 (MQ=255)
gacgacCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTTGGGACGAAGAtt > 4:241594/1‑139 (MQ=255)
gacgacCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTAAGAACGAAGATa > 2:252172/1‑140 (MQ=255)
cgacCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTGCGAACGAATATAAt > 4:600606/1‑140 (MQ=255)
cATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTTGTTAGAACGGATATAATcgcc > 2:55109/1‑140 (MQ=255)
cATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTTGTACGAACGAAGAAAATagcc > 2:570989/1‑140 (MQ=255)
cATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTTAGAAAAAAAATAATcgcc > 6:274165/1‑140 (MQ=255)
tCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTTGGT‑CGAACGAAGATTAtatcacc > 6:298371/1‑134 (MQ=255)
tCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTTGTTCGAAACAAGCTaaaaaccgc > 6:363511/1‑133 (MQ=255)
tCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTTGTACGAAAGAAGCTAAtaccc > 8:108283/1‑134 (MQ=255)
cAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTAAGCACCAAGCTAATCGCCGCCTCaa > 4:363616/1‑140 (MQ=255)
cAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTAACAAAGCACATAATAGCCGCATCaa > 6:148913/1‑140 (MQ=255)
gCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGGTCGAACGAACATAATCGCCGCCTCcaaaa > 6:584410/1‑139 (MQ=255)
ttCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTTGTTAGGACCAAGATAATATCCGCAACaaaaaaat > 2:616660/1‑136 (MQ=255)
tCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCt < 7:21755/138‑1 (MQ=255)
tCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTACGAACGCAGATAATAGCCGCATAAAAATcata > 3:270450/1‑137 (MQ=255)
ttGCTCACTCAGCGCCTGGTTCATGTCACCGGTCAGCGCGGCGCTGTTGTAGCCGCTACGCTCACGAGCTTCTGCCACTTCCAGCGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTc < 7:373679/137‑1 (MQ=255)
cTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCa < 2:126664/140‑1 (MQ=255)
tGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGTTTAGGACGCAGATAATAGCCGCAACAAAATATTACGcgtgcac > 3:554271/1‑134 (MQ=255)
gCTCACGCAGCGCCTGGTTGATGTCAGCGTTCATCGCGGCGCTGTTTTAGCCGGTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAgg < 5:409148/140‑1 (MQ=255)
gCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGGTCGCACGCAGATAATAGCCGCCACAAAAAATTCCGcgtgcacg > 2:696912/1‑133 (MQ=255)
tCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGGTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCAAGAGGCGC‑GTTTTTTGTTCTGGCGCTGATAATCGCGCCCTCAAAAAATTGCGCGTCCAgg > 8:270406/1‑138 (MQ=255)
aGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTAc < 3:66613/140‑1 (MQ=255)
gcCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTACGCACGAAGATAATCGCCGCATCAAAAACATCAGCGTCCAGGAAACGTACCAg > 2:500238/1‑140 (MQ=255)
ggTTCATGTCACCGTTCATCGCTGAGCTGTTGTATCCGTTACGCGCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCt < 6:178165/140‑1 (MQ=255)
gTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCtt < 4:293678/140‑1 (MQ=255)
tCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTTGTTCGAAAGCAGATAATGGCCCCAACAAAATATTCAGCGTCCAGGCAACGGAACAggggtt > 8:637078/1‑133 (MQ=255)
gTCACCGTTCCGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTACGAAAGAAAATTATAGCAGCCTCAAAATAGTGCGCTTACAGGGAACGTTCCAGAGCGTGGtttt > 4:60244/1‑140 (MQ=255)
gTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGtttt < 1:696912/140‑1 (MQ=255)
cGTTCCGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 4:478511/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAATAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 4:388710/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGATCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 4:214571/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATACTCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 6:110232/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCTCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 4:4460/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTAc < 7:6064/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTAc < 8:184656/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 3:133836/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 4:395898/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 4:347743/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 3:623502/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 2:659292/140‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCAGCCACATCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTAc < 8:146184/138‑1 (MQ=255)
cGTTCAGCGCGGCGCTGTTGTAGCCGGTACGCTAAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGc < 5:25440/140‑1 (MQ=255)
gTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCa < 1:219567/140‑1 (MQ=255)
aGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATAcc < 4:16777/140‑1 (MQ=255)
aGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATAcc < 3:115167/140‑1 (MQ=255)
aGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATAcc < 5:148913/140‑1 (MQ=255)
cgcgGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTGTTTTGTTCGAACGAAGATAATAGCCGGCTCAAAAACTTACCCGTACAGGAAAAGTAACAGGGCGTGGTTTTTTAGCAAAcccc > 2:81367/1‑140 (MQ=255)
gcggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGGCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATAccc < 8:11542/138‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCATAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCa < 8:429068/138‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 3:480465/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 1:690642/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 3:321897/140‑1 (MQ=255)
ggcgCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGACAATTCAAGAGACGC‑GTTTTTGGTTCGCACGAAGATAATCGCCTCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTTCTTCGTTTTTACGCATACCCCAGa < 6:310402/140‑1 (MQ=255)
ggcgCTGGTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGCACGAACATATTCGCCGCATCAAAATCTTCCGCTACCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGa < 6:522455/140‑1 (MQ=255)
ggcgCTGGTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCa < 8:402785/138‑1 (MQ=255)
ggcgCGGTTGTAGCCGTTACGCTAAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCAGCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTAGTTTTTACGCATACCCCAGa < 2:84514/140‑1 (MQ=255)
ggagcTGTTGTAGCCGTTACGAGAAACCGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTTTTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGGTTTTACGCATACCCCAGa < 5:46744/137‑1 (MQ=255)
cgcTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGCGGTTTTTGGT‑GGAAAGAAGAATATAGGCGCCGCAAAAAAGTCCGCTTGCAGGAAACGTACCAGGGCGTAGTTTTTTAGCATACACCAGACa > 2:39768/1‑140 (MQ=255)
gcTGTTGTTTCCGTTACGCGCTAGAGCTTCTGCCACTTCCAGCGTCGC‑GTTGTTTGTACGAACGAAGATAATCGCCGCATCAAATTCTTCCGCTTCCCGGAAACGTACCAGTGCTTCGTTTTTACTCATACCCCAGACat < 3:308860/140‑2 (MQ=255)
gcTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAg < 6:523783/140‑1 (MQ=255)
tgtAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAg < 3:519221/140‑1 (MQ=255)
tgtAGCCGTTACGATCAAGAGATTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAg < 5:166485/140‑1 (MQ=255)
ccGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAg < 7:133801/138‑1 (MQ=255)
cGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGctc < 5:181814/140‑1 (MQ=255)
tACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTTGGTCGCACGAAAATAATACCCGGATCAAAATATTCAGCGTCCAGGCAACGGTCCATTGCTTAGTTTTTAGCCATAACCCCCACAGTCCACGAGCTCggg > 6:401486/1‑140 (MQ=255)
tACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTTGTACGTAACAAGCTAATAGCCGCATCAAAATCTTACGCGTCCCAGGAACGTAAAAGGGCGTGGTTTTTTAGCATACCCCAGACAGTGCAGTatcgaggg > 6:670224/1‑133 (MQ=255)
tACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTTAGAACGAAGATAATAGCCGCATCAAAATCTTCCGCTTACAGGAAACGTACCAGTGCTTCGTTTTTAAGCATACCCCCGACAGGCCAGTATCTCTgg > 4:474062/1‑140 (MQ=255)
tACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GGTTTTGGTACGAACCAAGATTATCGCCGCATCAAAAAATTACGCGTACCGGAAAAGTACCAGTGCTTCGTTTTTTAGCAAGACCCAGACAGTCCAGTAGCGCTgg > 4:494390/1‑140 (MQ=255)
aCGCTCATGAGCTTCTTCCACTTCCAGAGGAGC‑TTGTTTGGTACGAACGAATATAATCGCCGCATCAAAATCTTCCGCTTCAATGAAACGTACCAGTGATTCGTTTTTACGAATACCCCAGACAGTACAGTAGCTCTGGc < 4:63630/140‑1 (MQ=255)
cgatCAAGAGCTTCTGCCACTTCCAGAGTCGC‑TTGTTTGGTACGAACGAAGATAATCGCCGCAGCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTgg < 8:527897/135‑1 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCt < 3:369970/140‑1 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCt < 6:393796/140‑1 (MQ=255)
cGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCt < 5:82908/140‑1 (MQ=255)
tCAAGAGCTTCTGCCACTTCCAGAGTCTC‑GTTTTTGGTAAGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGAt < 1:558992/140‑1 (MQ=255)
tCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGAt < 1:558995/140‑1 (MQ=255)
gCTTCTGCCACTTCCAGATGCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCACGTAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTGTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCa < 7:427972/138‑1 (MQ=255)
gCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAgg < 1:115364/140‑1 (MQ=255)
gCCACTTCCAGAGTCGC‑GGTTTTTGTTCGAACGCAGAAAATAGCCCCCAAAAAATAATAAGCATCCACGAAAAGAACAAGTGGTTGCTTTTTTAGCAGAACCCAGACAGTCACGAAGCAAAGGCTGATGTGAGGGCgggg > 2:483922/1‑139 (MQ=255)
gCCACTTCCAGAGTCGC‑GGTTTTTGGAAGAACGAAGATAATCGCCCCAACAAAATAATACGCGTCCAGGAAACGGACCCTAGCGTGCTTTTTAAGCCAACCCCCGCCAATCCAGTAGCGATGGCGGATGTGAGGAAgg > 8:146463/1‑138 (MQ=255)
gCCACTTCCAGAGTCGC‑GGTTTTGGTACGAACCAAGATAATAGCCGCAGCAAAATCTTCCGCTTACAGGAAACCGACCAGTGCGTAGTTTTTACGCAAACACCAGACACTCCAGTAGATCGGGGGGATGTCATGGCGGGt > 4:141223/1‑140 (MQ=255)
gCCACTTCCAGAGTCGC‑GGTTTTGGTAAGAACGCAGATAATAGCCGCATCAAAATATTCCGCTTACCGGAAACCTACCACGGCTTCGTTTTTAAGCATAACCCACACACTCCACTTGCTCGGGGGGTTTTGAGGACgggg > 6:205624/1‑139 (MQ=255)
cACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAg < 1:81367/140‑1 (MQ=255)
ccAGAGTCGC‑GTTTTTGGTACGAACGAATATAATCGCCTCATCAAAATCTTCCGCTTCCACGAAACGTACAAGTGCTTCGTTTTTACGCATACCCCAGAAAGTACAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACg < 5:167424/140‑1 (MQ=255)
ccAGAGTCGC‑GTGTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACg < 2:280489/140‑1 (MQ=255)
tCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTgg < 8:479057/138‑1 (MQ=255)
tCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGAc < 3:363616/140‑1 (MQ=255)
gcgc‑gTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGAc < 6:358455/139‑1 (MQ=255)
tGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTGAATgcgc < 4:111628/140‑1 (MQ=255)
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ATCAGGATGTCCAGACGACCATCTTTCAGGCGTTCCAGTGTCTGCTCACGCAGCGCCTGGTTCATGTCACCGTTCAGCGCGGCGCTGTTGTAGCCGTTACGCTCAAGAGCTTCTGCCACTTCCAGAGTCGC‑GTTTTTGGTACGAACGAAGATAATCGCCGCATCAAAATCTTCCGCTTCCAGGAAACGTACCAGTGCTTCGTTTTTACGCATACCCCAGACAGTCCAGTAGCTCTGGCTGATGTCAGGACGGGTAGTCACGCTGGACTGAATGCGC > NZ_CP022686/2048957‑2049232
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
