Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A27 F36 I0 R1
|
164 |
7919.5 |
7665810 |
98.4% |
7543157 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,110,457 |
T→G |
12.9% |
K12N (AAA→AAC) |
rplM ← |
50S ribosomal protein L13 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,110,457 | 0 | T | G | 12.9%
| 341.1
/ 14.3
| 195 | K12N (AAA→AAC) | rplM | 50S ribosomal protein L13 |
| Reads supporting (aligned to +/- strand): ref base T (65/100); new base G (28/2); total (93/102) |
| Fisher's exact test for biased strand distribution p-value = 2.66e-08 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 196 total aligned reads displayed.
TTCAGAACGATGATGTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGAAT > NZ_CP022686/2110320‑2110593
|
ttCAGAACGATGATGTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTATGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACAAGTCGCGttt > 5:321638/1‑140 (MQ=255)
cAGAACGATGATGTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTa < 7:196859/140‑1 (MQ=255)
cAGAACGATGATGTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTa < 4:163143/140‑1 (MQ=255)
atgatgTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTc < 5:889490/140‑1 (MQ=255)
tgatgTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACCTACCAGTCGCGGTTTAAGGGTTCt > 6:127585/1‑140 (MQ=255)
tgatgTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCt > 5:83717/1‑140 (MQ=255)
tgatgTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCt > 3:653725/1‑140 (MQ=255)
tgatgTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCt > 2:976835/1‑140 (MQ=255)
tgatgTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTAAGGGTTcg > 1:193128/1‑139 (MQ=255)
tAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGATCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGttt < 4:100414/140‑1 (MQ=255)
aTCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGGTTAGGGttttt > 5:180978/1‑138 (MQ=255)
tATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGGTTCTGGTTTTGCTGTaaaa > 6:892997/1‑140 (MQ=255)
cTACGTGCGGAGTGTATTCCGCGTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGtt < 1:436586/140‑1 (MQ=255)
cGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGGTTATGGTTTAGCTGTAAAAGtttta > 1:708066/1‑139 (MQ=255)
gTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTGTTCGGGTTCGGGTTTAGCTGTAAAAGTTTTCa > 8:1227/1‑140 (MQ=255)
cGGAGTGTATTCCGCTTTGTGCTTACCGCTCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTTAGGTTTATGGTTTAGCTGTAAAAGTTTTCAttt > 5:392579/1‑139 (MQ=255)
cGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACTGTTTCTGGTTTAGCTGTAAAAGTTTTCATTa > 8:727935/1‑140 (MQ=255)
cGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTa < 5:435037/140‑1 (MQ=255)
cGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAACTTTTCATTa > 3:802340/1‑140 (MQ=255)
gAGTGTATTCCGCTTTGTGCTTACCGCGCAGTCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAAAAACATACCAGTCGCCGATTTCGGGTTGTGGTTTAGCTGTAAAAGATTTCaaaaaa > 8:636842/1‑135 (MQ=255)
tgtATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTGCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGc < 6:705121/140‑1 (MQ=255)
tATTCCGCTTTGTGCTTACCGCGCCGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGCGTTTTACCGGTCGCGTCCGCATCATACCAGGCGCGGGTTACGGTTTCTGGTTTTGCTGTAAAAGTTTTCATTAAAATCtt > 6:94480/1‑140 (MQ=255)
ttCCGCTTTGTGCTTACCGCGCAGGCGACGCGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTAACCTGTCGCGTCCACAACAAAACAGTCGCGGTTTAAGGTTTGTTGTTTAGATGTAAAATTTTAGAATAAAATCttta > 3:571996/1‑138 (MQ=255)
ttCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTAc < 7:336613/140‑1 (MQ=255)
tCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTAcc < 5:209801/140‑1 (MQ=255)
tCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTAcc < 8:505087/140‑1 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCCGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGTTTACGGTTTCTGGTTTAGCTGTAAAATTTTTCATTAAAAGCTTACCCaata > 1:75008/1‑140 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAGCCTAGCAGTCGCGGTTTTCGGTTTCTGGTGTAGGGGTACAAGTTTTCATTAAACTCTTTCCAaatt > 5:720096/1‑139 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTCGCTGGAAAAGTTTTCCTTAAAAGCGTACCCaata > 4:902620/1‑140 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaata > 2:310999/1‑140 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaata > 2:232853/1‑140 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaata > 4:670646/1‑140 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaata < 6:83717/140‑1 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaaaa > 3:453439/1‑138 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGGTTAGCTGTAAAAGTTTTGATTTAAAGCTTAACCaaaa > 7:774255/1‑138 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGTTTACGGGTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTAccccaaa > 1:559398/1‑136 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGGTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTAATTAAAAGCTTACCCaaaa > 1:946592/1‑138 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGGCAACAACATACCAGTCGCGTGTTACGGTTTCGTGTTTATCTTTAAAAGTTTTCATTAAAAGCTTACCCaata > 5:860865/1‑140 (MQ=255)
ttGTGCTTCCGGCGCAGGCGACGAACCAGTTCAGTAGCCTGACGGCCCAGAGTTTTAGCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaataa < 2:893694/140‑1 (MQ=255)
ttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaataa < 8:80293/140‑1 (MQ=255)
tgtgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCATCCACATACCAGTCGGCTTTTGCGGGGTCTGGTGTAGCTGGTAATGGGTTGATTAAAATCTATCCCaatata > 2:319743/1‑138 (MQ=255)
tgtgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTTCGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaataaa > 7:596033/1‑140 (MQ=255)
tgtgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaataaa < 1:310999/140‑1 (MQ=255)
tgtgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGTTTAAGGTTTATGGTTTAGCGGTTAAAGGTTTCATTAAAAGGTTACCCaaaaaa > 6:929001/1‑140 (MQ=255)
tgtgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGGTTTGGGGTTGTGGTTTAGCTGTAAAAGTTTTCCTTAAAAGCTTACCCaataaa > 4:277535/1‑140 (MQ=255)
tgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTGTGGTTTTGCTGTAAAAGTTTTAATTAAAAGCTTACCCaattaata > 4:506425/1‑140 (MQ=255)
tACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTTTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTa < 8:471346/140‑1 (MQ=255)
tACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTa < 7:580130/140‑1 (MQ=255)
tACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTa < 7:791758/140‑1 (MQ=255)
aCCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCTCGTCCACAACATACCAGTAGCGTTTTACGGTTTGTGGTTTAGCTGGAAAAGTTTTCATTAATAGAGTAACCAATAAATAGTTac > 8:442971/1‑140 (MQ=255)
gcgcAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACg < 3:933665/140‑1 (MQ=255)
cgacgaTCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGATGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTTGTGa < 4:385206/140‑1 (MQ=255)
cgacgaGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGa < 3:20256/140‑1 (MQ=255)
acgaGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAac < 1:133939/140‑1 (MQ=255)
cAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCaa < 6:652805/140‑1 (MQ=255)
aGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGTGTACGGGTTCTGGTTTATCGGTAAAAGTTTTAATTAAAAGCTTACCCAATAAATAGTTACACGTTTGTGATAACCCaaa > 7:401007/1‑140 (MQ=255)
cAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTc < 7:717938/140‑1 (MQ=255)
tAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTc < 1:232853/140‑1 (MQ=255)
tAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTc < 5:567868/140‑1 (MQ=255)
aGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAAttg < 4:309177/140‑1 (MQ=255)
aCGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGTTTTAGGTTTCTGGTTTAGCTGTAAAAGTTTTAATTAAAATCTTACCCAATAAATAGTTACACGTTTGTGAAAACCCCAACGTCTTaaaatttt > 2:488844/1‑135 (MQ=255)
cGGCCCAGAGTTTTACCGGTCGCGTCAACAACATTCCAGTCGCGGTTTACGGGTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAAttgttg < 8:54461/140‑1 (MQ=255)
gCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTATGGTGTTGCTGTAAAAGTTTTAATTAAATGCTTACCCAATAAATATTTACACGTTGGTGAAACACCAAACCTCTTGAATTTTTGAg > 7:824018/1‑140 (MQ=255)
gCCCAGAGTTTTACCGGTAGCGTCAACAACATACCAGTCGCTTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAg < 2:649482/140‑1 (MQ=255)
cccAGAGTTTTACAGGTCGCGTCAACAACATACCAGTCGCGTTTTTAGGTTTCTGGGTTAGCTGTAAAAGTTTTAATTAAAAGCTTAACCAATAAATAGTTACACGTTTGTGAACACCCAAACGTCGTCAATTGTTGAgg > 2:755162/1‑140 (MQ=255)
ccAGAGTTTTTCCGGTCGCGTCAACAACATACCAGTCGCTTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGt < 8:30562/140‑1 (MQ=255)
gagTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACTTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTca < 1:976835/140‑1 (MQ=255)
tACCGGTCGCGTCAACAACATACCAGTCGCGTTTTTAGGGTTTTTGTTTAGCTGTAAAAGTTTTAATTAAAAGCGTACACAATAAAAATTTACACGTTGGTGAAAACCCAAAAGTCATAAAATGTTGAGGTTAacaccaa > 4:639417/1‑137 (MQ=255)
tACCGGTCGCGTCAACAACATACCAGTCGCGTTTTAAGGTTTCTGGGTTAGCTGTAAAAGTTTTCATTAAAATCTTACCCAATAAATAGTTAAACGTTGGTTAACACCCAAACGTCATCAATTGTTGAGGTTCACACGAc > 7:609596/1‑140 (MQ=255)
ggTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAg < 7:511530/140‑1 (MQ=255)
gTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAACAGTAAAAATTTTGATTAAAATCTTACCCAATAAAAAGTTACACCTTGGTGTACACCCAAACCTCTTCAATTGTTGATGTTGACACGACaaatt > 5:350332/1‑138 (MQ=255)
gTCGCGTCAACAACATACCAGTCGCGTTTTACGGGTTATGGGTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTAGTCAATTGTTGAGGTTCCAACGACAAAGt > 8:590480/1‑140 (MQ=255)
gTCGCGTCAACAACATACCAGTCGCGTTTTAAGGTTTGTGGTTTATCTGTTAAAGTTTTAATTAAAATCTTAACCAAAAAATAGTTACACGTTGGTGAACACCCAAACCTCTTCAATTGTTGAGGTTAACAACACAAAGt > 3:512463/1‑140 (MQ=255)
gTCGCGTCAACAACATACCAGTCGCGGTTTACGGTTTGAGGTTTAGCTGTAAAAGTTTTCCTTAAAAGCTTACCCAAAAAATATTTACAAGTTGGTGAACACCCAAAACTATTCAAATGTTGAGGTTGACACGACAAAGt > 1:616679/1‑140 (MQ=255)
cgcgTCAACAACATACCAGTCGCGTTTTACGGGTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACAAGTTTGTGAACCCCCAAACGTCTTCAATTTTTGAGGTTCACACGACAAACTcc > 3:499220/1‑140 (MQ=255)
cgcgTCAACAACATACCAGTCGCGTTTTAAGGTTTATGGTTTAGCTGTAAAAGTTTTAATTAAAAGCTTAACCAATAAATAGTTACAACTTGGTGAACACACAAACGTCTTCAATTGTTGAGGTTCACACGCCAAAGTcc > 2:546894/1‑140 (MQ=255)
ggTCAACTACATTCCAGTCGCGTTTTAGGGTTTCTGGTTTAGATGTAAAAGTATTCATAAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACTCACAAACGTCTTCTATTGTTGAGGTTCACACGACAAAGTCCgg < 7:636842/139‑1 (MQ=255)
cgTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCgg < 4:475634/140‑1 (MQ=255)
gTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGc < 2:129233/140‑1 (MQ=255)
gTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGc < 3:849384/140‑1 (MQ=255)
acaTACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTa < 5:468817/140‑1 (MQ=255)
acaTAAAAGTCGCGTTTTACGTTTTCTGGTTTTTCGGTAAAAGTTTTCATTAAAAGCTTAGCCAATAAATAGTTACAGTTTGGTTAACACCCAAACTTCTTCAATTGTTGAGGTTCACACGAGATAGTCCGGCAAACCTa < 5:226143/140‑1 (MQ=255)
ccAGACGCGTGAGACGGTTTCTGGTTTAGCGGTATAAGTTTTCATTAAACGCTTTCACAATAAATAGTTACACGATGGTGCACACCCACCCGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCt < 8:851001/140‑1 (MQ=255)
gTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCg > 2:867886/1‑140 (MQ=255)
gTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACAAGACAAAGTCCGGCAAACCGTCCCCTTCg > 4:335261/1‑140 (MQ=255)
gTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTATTCAATTGTTGAGGTTCACCCGACAAAGTACGGCTAACCTACCCCTTCg > 8:435556/1‑140 (MQ=255)
tCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGa > 2:738240/1‑140 (MQ=255)
gtcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAATGGTCTTCTATTGTTGAGGTGCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 1:483967/138‑1 (MQ=255)
ggcgTTTTACGGTTTCTGGTTTTTCTGTCAAAGTTTTCATTAAAAGCTTTACCATAATATAGATACACGATGGTGAAAACCCAAACGTCTTCTTTTGTTGAGTGTCTCACGACAAAGTCCGGCAATCCTACCGCTTCGat < 3:831148/139‑2 (MQ=255)
ggagTTTTACTGTTTCTGGTTTTGCTGTTTTAGTTTTCATTTTAAGCTTACGCTTTTTATAGTTTCTCGTTGGTTAACACCCAAACGTCTTCAATTGTTGTGGTTCACACGAGAAAGTCCGGCATACCTAACCCTTCGaa < 6:611830/137‑1 (MQ=255)
cgcgTTTTTCGGTTTCTGGTTTAGCTGTTAAAGTTTTCATTATATGCTTACCCAATAAATAGTTACTCGTTGGTGTACACCCAAACGTGTTCATTTGTTGATGTTCACACGACATAGTCCGGCAAACCTACCCCTTCGaa < 6:468498/140‑1 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGCTGTTAAATTTTTCATTAATAGCTTACCCAATAAATAGTTACACGTTGGTGAACATCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 1:659246/140‑1 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGCTGTAAATGTTTTCATTAATAGCTTACCCAATAAATAGTTACAAGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 6:321638/140‑1 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCACTAAATAGTTACACGTTGGTGAACACCCAACCGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAACCCTACCCCTTCGaa < 8:706592/140‑1 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 3:639417/140‑1 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 2:601462/140‑1 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 7:727935/140‑1 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 2:333546/140‑1 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 6:272169/140‑1 (MQ=255)
gcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGAAt > 2:769323/1‑140 (MQ=255)
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TTCAGAACGATGATGTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGAAT > NZ_CP022686/2110320‑2110593
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
