Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A26 F36 I0 R1
|
149 |
10545.8 |
7272710 |
98.3% |
7149073 |
134.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,130,829 |
A→C |
8.4% |
V237G (GTT→GGT) |
mreC ← |
rod shape‑determining protein MreC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,130,829 | 0 | A | C | 8.4%
| 267.5
/ 5.4
| 134 | V237G (GTT→GGT) | mreC | rod shape‑determining protein MreC |
| Reads supporting (aligned to +/- strand): ref base A (106/14); new base C (3/11); total (109/25) |
| Fisher's exact test for biased strand distribution p-value = 2.83e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 136 total aligned reads displayed.
GGCGTCATCGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCGGCTGCAATTACGC > NZ_CP022686/2130694‑2130967
|
ggCGTCATCGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGCCGCGCCTGAATCACAGTATAAGCGCGCTGGGTATAGAGTTTTACGGAAGAGACAAcc > 8:39872/1‑138 (MQ=255)
cATCGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGAc > 3:86514/1‑138 (MQ=255)
aTCGGGTTAGCGCCGTTACGATCCGCGCCCCACAGAAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACACCCGCGACCgg > 6:237444/1‑140 (MQ=255)
cGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGAGACCgg > 3:406648/1‑138 (MQ=255)
gTTTGCGCCGTTACGCTCCGCGCCCCACAGCAGCAGCAGATACCGCAACCGTGGCAGTCCGGCAGTCGGACGCGCCTTAATCACAGTAAACGCGCGCGGGGAATCGAGTTTTCCGGAAGAGACACCCGCGACCGGATa < 2:131240/138‑1 (MQ=255)
cgcCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCtt > 8:155666/1‑138 (MQ=255)
ccGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCATTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTcc > 1:297910/1‑138 (MQ=255)
ttACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGCGGTTTACGGAAGAGACAACCGCGACGGGATAGCCTTCCgggca > 5:642869/1‑138 (MQ=255)
ttACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGaa > 5:406110/1‑140 (MQ=255)
ttACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGAATAAGCGCGCTGGGTATCGAGTTTTACGGAAGCGACAACCGCGACCGGATAGCCTTCCGGGaa > 6:388176/1‑140 (MQ=255)
aCGATCTGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGaa > 3:194926/1‑138 (MQ=255)
aCGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAATCGGACGCGCCTGAATCACAGTATAAGCGAGCTCGGTATCGAGATTTAAGGAATAGACCACCGAGACCGGATAGCCTTACGGGaa > 8:16273/1‑138 (MQ=255)
cgcaccGCCCCCCACCGCCGCCGCAGATACCGCAACCGTTCCAGCCCGCCAGTCGTCCGCGCCTAAAACACCGAATAAGCGCGCGGGTTAGCGAGTTTTCCGGACGCGCCACCCGCGACCGGATAGCCTTCCGGGAAACg < 6:619486/136‑1 (MQ=255)
cGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATACGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGaaa > 2:392962/1‑138 (MQ=255)
cgcCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGccc > 6:491708/1‑140 (MQ=255)
ccccACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGccc > 7:190034/1‑138 (MQ=255)
cccaACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGATTCACAGTATAAGCGCGCTGGGTGTCGAGTTTTACGGAAGAGACAACCGCGACCCGATAGCCTTCCGGGAAACGACCGccc > 1:40111/1‑138 (MQ=255)
cccACAGCATCAGCATATAACGCAAAGGTGGCAGTCCTGCAGTCGGACGCGCCTGATTCACAGTATAAGCGCG‑TTGGTATCGTGTTTTCCGGAAGATAAAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAg < 7:414525/138‑1 (MQ=255)
cacaagcagcatATACCGAAACCGTGCCAGCCCGGCAGTCGCCCGCGCCTCAATCACAGTATACGCGCGCGGGGTAACGCGTTTTACGTAAGACACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGAcc < 8:104248/134‑1 (MQ=255)
agcagcagcagATAACGCAAACGTTGCAGTCCTGCAGTCGGCCGCGCCTGAATCACAGTATAAGCGCGCTGGGTAGCGAGTTTTACGGAAGAGACAACCGAGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCggc > 6:673137/1‑139 (MQ=255)
agcagcagcagATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCg > 8:221778/1‑138 (MQ=255)
gcagcagcagATAACGCAAACGTTGCAGGCCTGCAGGCGGACGCGCCTGAATCACTTTATAAGCGGGCGGGGTATCTAGTTTTCCGGAAGAGACACCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCgg < 2:363595/138‑1 (MQ=255)
cagcagATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTcc > 5:527659/1‑139 (MQ=255)
agaagATAACGAAAACTGTGCAGTCCTGCATTCGGACGCGCCGTAAGAACTGTATAAGCGCGGTGGTTATCGTTTTTTCCGTAAGAGAAAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTc < 2:867470/135‑1 (MQ=255)
agATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCAcc > 1:197613/1‑138 (MQ=255)
agATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCAcc > 4:678818/1‑138 (MQ=255)
tAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGc > 2:307417/1‑138 (MQ=255)
aaCGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGcaca > 5:549647/1‑140 (MQ=255)
aaaaCGTTGCAGTCCTGCTGTCGGCCGCGCCTGAATCCCAGTATAAGCGCGCTGGGTATCGTGTTTTCCGTAAGATACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATc < 8:484997/137‑1 (MQ=255)
ccGTGGCTGTCCTGCAGTCGGACGCGCCTGAAGCAAATTATAAGCGGGGTGGGTATCGTTTTTTCCGTAAGACACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCAcc < 8:592430/137‑1 (MQ=255)
cGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCa > 1:31112/1‑138 (MQ=255)
ttGCAGTCCTGCAGTCGGACGCTCCTGAATCACAGTATAAGCGCGCTGGGTCTCTCGTGTTACGGAAGAGCCAACCGCGACCGGATAGCCGTCCGGGAAACGACCGCCCAGAACGGAAGGGCCCAGCACATCACCAac > 4:849730/1‑138 (MQ=255)
ttcAGTCCTCCATTCGTACGCGCATTAATCACAGAATACCCGCTCTGGTTATCTATTTTACCGTAACAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAaca < 2:65276/136‑1 (MQ=255)
gCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGa > 6:434518/1‑140 (MQ=255)
gTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCCGACCGGAAGTCACCAGCACATCACCAACACGaa > 1:376425/1‑138 (MQ=255)
gTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGaa > 1:376428/1‑138 (MQ=255)
gTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGaa > 2:645235/1‑138 (MQ=255)
cAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTa > 5:843976/1‑140 (MQ=255)
gTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTa > 4:386366/1‑138 (MQ=255)
gTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGCTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGCCCGGAAGTCACCCGCACATCACCAACACGATAATCCGTAtt > 5:720993/1‑140 (MQ=255)
ggACGCGCCTGAATCACAGTATAAGCGCGCTGGGGATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTctc > 6:269596/1‑138 (MQ=255)
aCGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGCCAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGc > 4:908368/1‑138 (MQ=255)
aCGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGc > 3:178680/1‑138 (MQ=255)
aCGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGc > 1:252975/1‑138 (MQ=255)
aCGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGc > 2:195826/1‑138 (MQ=255)
aCGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGc > 7:192501/1‑138 (MQ=255)
cgcCTGAAACACTTTATACGCGCGCGGGGTATCGTGTTTTCCGGAAGACACACCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTgg < 3:208729/138‑1 (MQ=255)
ccTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCa > 2:764003/1‑138 (MQ=255)
tGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGCCACCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCACCACGAATATCCGTATTCGCTGGCAGa > 3:527997/1‑138 (MQ=255)
gAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTAAGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGCCCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCAGTATTCTCTGGCAGATgg > 6:42861/1‑139 (MQ=255)
ccttataCGCGGGCTGGGTAGCGAGTTTTCCTCAAGACAAACCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGc < 5:871079/137‑1 (MQ=255)
gTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGCCCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGc > 4:638781/1‑138 (MQ=255)
gTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGc > 2:41897/1‑138 (MQ=255)
aGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACCCGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCaa > 2:461706/1‑138 (MQ=255)
gcgcgcTGGTTTTCTTGTTTTACGTAAGAGACACCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCaaa < 7:132699/138‑1 (MQ=255)
gcgcgcTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCaaa > 7:406563/1‑138 (MQ=255)
gggcTGGGTAGCGAGTTTTCCGGAAGAGACACCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatc < 2:387710/136‑1 (MQ=255)
gcgcTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatc > 3:233933/1‑138 (MQ=255)
cgcTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCACGCTGCAAatcatc > 5:321648/1‑140 (MQ=255)
gcTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatcat > 1:740037/1‑138 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACCACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatcatc > 7:29914/1‑138 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGTAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACAAACACGAATATGCGTATTCGATGGCAGATGCTCAAGATGAAAATCATCCg > 5:379612/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAACCGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 6:335773/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatcatc > 1:326632/1‑138 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatcatc > 7:651759/1‑138 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatcatc > 1:279260/1‑138 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatcatc > 3:12119/1‑138 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatcatc > 2:321556/1‑138 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatcatc > 3:211373/1‑138 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 6:367538/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 6:188114/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 5:714130/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACAAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatcttc > 2:292651/1‑138 (MQ=255)
cTGGGTATCGAGTATTACGGAAGATACAACCGCGACAGGATAGACATCCGGGAAACGACAGCCCAGACCGGAAGTCACCAACACATAAACAACACTAATATACGAATACGCTGGCAGATACTCAATCTGAAAagcatcag > 6:367535/1‑138 (MQ=255)
ggggTTTCGTGTTTTTCGGAGGACCCACCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGt < 6:752088/139‑1 (MQ=255)
gggTATCGATTTTTATGTAACAGCCACCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg < 3:354553/138‑1 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCTCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATAACCAACACGAATATCCGAATTCGCTGGCAGATGCTCAAGCTGCAAatcatcag > 3:517444/1‑136 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCATCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 2:840468/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACCTCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 1:575501/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGCATATCCGTATTAGCTGGCAGCTGCTCAAGCGGCCAGTCATCCg > 2:910708/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCCGATGCTCAAGCTGCAAATCATCCg > 1:233124/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 2:650686/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 1:281832/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 7:572364/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATAATCCg > 7:209868/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAAACATCCg > 1:847814/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGATGGCAGATGCTCAAGCTGCAAATCATCCg > 7:508231/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACAGCGACCGGATAGCCATCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGAATTCGCTGGCAGAAGCTCAAGCTGCAAATCATCCg > 7:172984/1‑138 (MQ=255)
ggTTTCGTGTTTTCCGTAAGAGCCCACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGt < 1:106691/138‑1 (MQ=255)
aGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCAGTACAACCg > 7:747088/1‑138 (MQ=255)
tACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCCCCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACCACCGTTAcc > 4:237845/1‑138 (MQ=255)
tACGGAAGAGACAACCGCGACCGGATAGACTTCCGGGAAACGCCCGCCCAGCCCGGAATTCACCAGCACATCACAAACACGAATATCCGTATACGCTGGCAGATGATCAAGCAGCAAATCATCCGTACAACCGTTAcc > 4:245258/1‑138 (MQ=255)
cGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAaca > 7:405494/1‑77 (MQ=255)
cGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAaca < 8:405494/77‑1 (MQ=255)
cGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCATATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCgg > 3:682106/1‑138 (MQ=255)
ggAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCGGc < 8:564447/138‑1 (MQ=255)
gagaCAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCGGCTGCa < 7:290904/138‑1 (MQ=255)
gaCAACCGCGACCGGATAGCCTTCCGGGAACCGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCGGCTGCAAt > 2:872570/1‑138 (MQ=255)
aaCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCGGCTGCAATTAcgc < 6:838593/140‑1 (MQ=255)
aaCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCGGCTGCAATTAc > 2:848148/1‑138 (MQ=255)
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GGCGTCATCGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCGGCTGCAATTACGC > NZ_CP022686/2130694‑2130967
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
