Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A28 F11 I0 R1
|
246 |
10296.8 |
9866480 |
98.4% |
9708616 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,130,829 |
A→C |
11.8% |
V237G (GTT→GGT) |
mreC ← |
rod shape‑determining protein MreC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,130,829 | 0 | A | C | 11.8%
| 361.3
/ 13.2
| 194 | V237G (GTT→GGT) | mreC | rod shape‑determining protein MreC |
| Reads supporting (aligned to +/- strand): ref base A (134/31); new base C (10/17); total (146/48) |
| Fisher's exact test for biased strand distribution p-value = 6.19e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 196 total aligned reads displayed.
TTCCGGCGTCATCGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCGGCTGCAATTAC > NZ_CP022686/2130690‑2130965
|
gTCATCGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGCCGCGCCTGAATCACAGTATAAGCGCGCTGGGGATCGAGTTTTACGGAAGAGACACCCGCGAc > 3:100255/1‑140 (MQ=255)
gTCATCGGGTTAGCGCCGGTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTAGCAGTCCTGCACTCGGACGCGCCTGAAGGACAGGAGACGCGCGCTGGGTATAGAGTTTTTCGGAAGCGCCAACCGAGAc > 4:709126/1‑140 (MQ=255)
tCATCGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCATATACCCCAAACGTGGCAGTCCTGCAGTCGGACGCGCCTTAATCACAGTATACGCGCGCGGGTTATCGAGTTTTACGGAAGATACAACCGCGa < 6:63533/138‑1 (MQ=255)
tCATCGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGAcc > 2:985045/1‑140 (MQ=255)
tCGCGTTAGAGCCCTTACGATCCGCTCCCCACAGCAGCAGCAGATAACGAAAAAGTTGCAGTCATGCAGTCTGACGCGCCTGAATCACAGAATAAGCGCGCAGGGTATCGAGTTTTACGTAAGAGACAACCAAGACAGGa > 1:717505/1‑140 (MQ=255)
gcGGGTTAGCGCCGTAACGATCCGCCCCCCACCGCAGCAGCAGATAACGCAAACGTGGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTAGGGAAGAGACAACCGCGACCGGa < 8:433031/139‑1 (MQ=255)
cGGGTTAGCGCCGTTACGATCCGCGCCCCCCAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGCCGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGACGAGACAACCGCGACCgg > 5:1033340/1‑138 (MQ=255)
aGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTGTTACGGATGAGACAACCGCGACCGGATAGCCtt > 3:560932/1‑140 (MQ=255)
ttACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGaa > 1:341573/1‑140 (MQ=255)
ttACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGaa > 4:832704/1‑140 (MQ=255)
aCGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACACCCGCGACCGGATAGCCTTCCgggca > 6:776283/1‑136 (MQ=255)
cgcgCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTTCGGAAGAGACACCCGCGACCGGATAGCCTTCCGGGAAACGCCCGc > 1:397657/1‑140 (MQ=255)
cgcgCCCCACAGCAGAAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGc > 8:625399/1‑140 (MQ=255)
gcgcCACACACCAGCAGCAGAAACCGCAAACGTTGCAGTCCTGCAGTCGGACGCGCATGAATCACATTATAAGCGCGCTGGGTATCGCGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGcc < 4:513791/140‑1 (MQ=255)
cgcCCCACAGCAGCAGCAGATTACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTCGGTATCGAGTTTTACGGAAGCGACACCCGCGACCGGATAGCCTGCCGGGAAACgaccgacc > 4:399462/1‑140 (MQ=255)
cgcCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCGCAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACACCCGCGACCGGATAGCCTTCCGTGCAACGACCGccc > 1:904516/1‑140 (MQ=255)
cgcCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGCCCGGATAGCCTTCCGGGAAACGACCGccc > 1:438617/1‑140 (MQ=255)
cgcCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGccc > 3:61020/1‑140 (MQ=255)
cgcCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGccc > 1:270706/1‑140 (MQ=255)
ccccACAGCAGCAGCAGATACCGCAAACGTTGAAGTCCGGCAGTCGGACGAGCCTGAATCACAGTATAAGCGCGCTGGGTATCTAGTTTTACGGAAGCGACACACGCTACCGGATAGCCTTCCGGGAAACGACCGcac > 5:703780/1‑136 (MQ=255)
ccccACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGCGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGccc > 6:909463/1‑138 (MQ=255)
agcagcagcagATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCg > 6:951065/1‑138 (MQ=255)
cccgcagctcATAACGCAAACTTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACTGTTTAACCGGGGTGGGTAGCGTGTTTTCCGGATGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGaa < 2:1112378/137‑1 (MQ=255)
acaccagcagATACCGCAAACGTGCCAGGCCTGCCGTCGGACGCGCGTGCACCACATTAAATCCGCGCGGGTTAGCGCGTTTTACGGAAGATCCACCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGaa < 4:332763/136‑1 (MQ=255)
cagcagATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGCCCGCCCAGACCGGAAGTCa > 2:765466/1‑140 (MQ=255)
cagcagATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCa > 2:542018/1‑140 (MQ=255)
cagcagATAACGCAAACGTTGCAGTCCTGCAGTCCGACGCGCCTGAATCACAGTATAAGCGCGCTGGGGATCGAGTTTTACGGAAGAGATAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGCAGTcc > 8:986951/1‑139 (MQ=255)
gcagATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGTATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTccac > 2:85681/1‑137 (MQ=255)
gcagATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCAcc > 1:164951/1‑140 (MQ=255)
gATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGCCCGGAAGTCACCAGc > 7:66471/1‑140 (MQ=255)
gATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGc > 1:909214/1‑140 (MQ=255)
gATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGc > 3:649231/1‑140 (MQ=255)
gATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGc > 1:1265446/1‑140 (MQ=255)
gATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGc > 3:415160/1‑140 (MQ=255)
aaaCGCAAACGTTGCAGCCCTGCAGTCGGCCGCGCCTGAATCAACGTATACGCGCGCTGGGTATCGAGTTTTACGGAAGAGACACCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGcac < 4:75155/139‑1 (MQ=255)
cGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGAGAGATGGGTATCGAGTTTTACTGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGCCCGCCAAGACCGGAAGTCACCAgaccaac > 4:240730/1‑134 (MQ=255)
cAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCCCCAGCACATc > 6:221884/1‑138 (MQ=255)
cAAACGTGGCTGTCCTGCAGTCGGCCGCGCCTTAATCACATAAAACGCGCGGTGGGTATCTAGTTTTACGCAAGACACACCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATc < 5:1148132/138‑1 (MQ=255)
gCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGCCCGGATAGCCTTCCGGGAAACGAACGCCCAGACCGGAAGTCACCAGCACATCACCAACACGa > 3:904798/1‑140 (MQ=255)
acagccTGCAGTCGGACGCGCTTTAATCACATTATACGCGCGGGGGTTATCGAGTTTAACGTAATACAAAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGaa < 2:628683/136‑1 (MQ=255)
cccTGCTGTCGGACGCGCCTGAAACACATTATAAGCGCGCTGGTGTTCGTGTTTTACGGAATACACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGact < 6:823063/137‑3 (MQ=255)
tGCTGTCTGATGCGCCTTAATCAAAGTATAGGCGCGCGGGGTATCGAGTTTTACGGACCCGCCAACCGCGACCGGATAGCCTGCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCg < 8:581408/140‑1 (MQ=255)
cAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGACACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTa > 8:891656/1‑140 (MQ=255)
tCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGCCAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTc > 4:461765/1‑140 (MQ=255)
gtaCGCGCCAGAATCACAGTATAAGCGCGCAGGTTATCGAGATTTACGGAAGCGACCACCGCGACCGGCTAGCCAACCTGGAAACTACCGCCAAGACCGGAAGTCACCAGCACATCACCAACACGACTATCCGTAGTCGc > 2:114144/3‑140 (MQ=255)
ggACGCGCCTGAATCACAGTATAAGCTCGCTGGGTATCGAGTATTACGGAAGAGACAACCGCGCCCGGATCGCCTTCAGGGAAACGACCGCCCAGACAGGAAGTCACCAGCACATCACCAACACGAAAATCCGTATTCGc > 3:321785/1‑140 (MQ=255)
ggACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCTCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGGATTCGc > 4:597255/1‑140 (MQ=255)
aCGCGCCTGAATCCCAGTATAAGCGCGCTGGGTATCGAGTGTTACGGAAGCGACAACCGCGACCGGATAGCCGTCCGGGAACCGCCCGCCCAGACCGGAAGTCACCAGCCCATAACCCACACGAATCTCCGGATTCGCTg > 7:450279/1‑140 (MQ=255)
aCGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACACCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTg > 2:886893/1‑140 (MQ=255)
aCGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGc > 5:17227/1‑138 (MQ=255)
cgcgCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTgg > 8:29050/1‑140 (MQ=255)
gcgcCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGCCCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTg > 5:146900/1‑138 (MQ=255)
cgcCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGCCCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCTCTGGcc > 3:52484/1‑139 (MQ=255)
cgcCTGAACCCCATTAAACGCGCGCTGGGTATCGTGTTTTCGGGAAGCCACACCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCa < 3:730161/140‑1 (MQ=255)
gAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCCCCCGCACATCACCAACACGAATATCCGTATTCGCTGTCatcg > 6:108663/1‑135 (MQ=255)
caGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGc > 7:463048/1‑140 (MQ=255)
caGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGc > 2:453144/1‑140 (MQ=255)
caGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGc > 2:112751/1‑140 (MQ=255)
caGTATAAGCGCGCTGGGCATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGACACGACCGCCCAGCCCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGc > 4:1185810/1‑140 (MQ=255)
aaGTATATGCCGGCGGGGTATCTCTTTTAACGGACCACACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGc < 2:630547/139‑1 (MQ=255)
aGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCt > 8:162236/1‑140 (MQ=255)
gtttaAGCGCTCTGGGTAGAGAGTTTTAGGGAAGAGACAACCGCGACCGGATAGCATTCCGTGAAACGACCGCACAGACCGGAAGTCAGCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTg < 2:1170098/137‑1 (MQ=255)
taAGCGCGCTGGGTATCGAGTTTTACGGAAGAGCCCACCGCGCCCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGCTGCTCAAGCTGCaa > 8:355213/1‑140 (MQ=255)
taAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCAGTATTCGCTGGCAGATTCTCAAGCTGCaa > 1:1135028/1‑140 (MQ=255)
aaaGCGCGCTGGTAATCCAGTTTACCGGAAGACACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCaa < 4:259811/139‑1 (MQ=255)
gcgggcTGGGTTTGGTGTTTTAGTTAATACAAACCCGCGACCGGATAGCCTTCCGGGAAACGTCCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCaaa < 5:990289/138‑1 (MQ=255)
gcgcgcTGGTTATCTTTTTTTAGGTAATAACAAACCGCGACCGTATAGCCATCCGTGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACTCGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatc < 2:393394/140‑1 (MQ=255)
cgcTGGGTATCGAGTTTTACGGAAGAGACACCCGCGACCGGATAGCATTCCGGGAAACGACCTCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatcatc > 4:316499/1‑140 (MQ=255)
cgcTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGCCCGGAAGTCCACAGCACCGCACCAACACGAATATCCGTATTCGCTGTCAGATGCTCAAGCTGCAAatcatc > 3:1110177/1‑140 (MQ=255)
cgcTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACTAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatcatc > 3:919883/1‑140 (MQ=255)
cgcTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatcatc > 1:463381/1‑140 (MQ=255)
cgcTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCAAGACCGGAACTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGACACATGCTCAAGAAGCAAatcatc > 2:262169/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATGGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 8:64254/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGACACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGAATTCGCTGGCAGATGCTCAAGAGGCTAATCAGCCg > 7:585642/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGCCCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAACTCATCCg > 1:536052/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 7:956565/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 3:952653/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 4:9447/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 1:1145013/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 1:753124/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCACAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGTCAGATGCTCAAGCTGCAAATCAACCg > 4:577661/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTACCGGGAAACGACCGCCCAGACAGGACGTCACCAGCACATCACCAACACGAATAACCGTATTCGCTGGCAGATGCTCCAGCTGCAAATCATCCg > 7:285209/1‑140 (MQ=255)
cTGGGTATCGAGTTTAACCGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGCCCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTCCAAatcatc > 5:582592/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGCGACAAACGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCAGAAGACACCAGAACATCACCAACACGCATATCCGTATTCGCTGGCAGATGCTCACGCTGCAATTCATCCg > 6:888017/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCTGATAGCCTTCAGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACAACCACGAATATCCGTAATCGCTGGCTCATGATCAAGATGCAAATCATCCg > 6:551362/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 5:463078/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 5:758277/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 6:42906/1‑138 (MQ=255)
ggTATCGTGTTTTCGGGACGAGACACCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCGCAAGCTGCAAATCATCCGTAc < 3:256864/140‑1 (MQ=255)
tttACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTAcc > 2:186771/1‑140 (MQ=255)
tttACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTAcc > 1:230803/1‑140 (MQ=255)
tACGGAAGAGCCAACCGAGACCGGATAGCCTTCCGGGAAACGACCGCCCAGCCCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGCTGCTCAAGCTGAAAATCATCCGTACAACCGTTAcc > 6:696/1‑138 (MQ=255)
tACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGCCCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCgg > 7:18783/1‑140 (MQ=255)
tACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAATATTCAAATCATCCGTACAACCGtttagtg < 2:341573/140‑6 (MQ=255)
tACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCgg > 8:45123/1‑140 (MQ=255)
cGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGCCCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATAATCCGTACAACCGTTACCgg > 6:748388/1‑138 (MQ=255)
gcgaCAACCGCTAACGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCCTACAACCGTTACCGGCTGCAAt < 8:720038/138‑1 (MQ=255)
agaCAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCCCATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCGGCTGCaa > 5:333260/1‑138 (MQ=255)
gaCAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCGGCTGCAATTa < 2:753124/140‑1 (MQ=255)
aCAACCGCCACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCTGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAAGCATCCGTACAACCGTTACCGGCTGCAATTAc < 8:316319/140‑1 (MQ=255)
|
TTCCGGCGTCATCGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCGGCTGCAATTAC > NZ_CP022686/2130690‑2130965
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
