Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A30 F12 I0 R1
|
192 |
11691.1 |
8856334 |
98.4% |
8714632 |
135.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,130,829 |
A→C |
8.8% |
V237G (GTT→GGT) |
mreC ← |
rod shape‑determining protein MreC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,130,829 | 0 | A | C | 8.8%
| 387.4
/ 4.1
| 190 | V237G (GTT→GGT) | mreC | rod shape‑determining protein MreC |
| Reads supporting (aligned to +/- strand): ref base A (136/32); new base C (8/14); total (144/46) |
| Fisher's exact test for biased strand distribution p-value = 3.01e-05 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 192 total aligned reads displayed.
TTCCGGCGTCATCGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCGGCTGCAATTAC > NZ_CP022686/2130690‑2130965
|
ttCCGGCTTCGTCGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCACATATCGAAACCGTTGCAGTCCTGCAGGCGGCCGCGCCTGAATCACAGTATAAGCGCGCTGGCAATCGAGTTTTACTGAAGAGACaa > 6:800363/1‑140 (MQ=255)
ccGGCGTCATCGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACaa > 2:475786/1‑138 (MQ=255)
ccGGCGTCATCGGGTTAGCGCCGTAACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACTCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAAcc > 7:85648/1‑140 (MQ=255)
ggCGTCATCGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAAcc > 1:742199/1‑138 (MQ=255)
ggCGTCATCGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACcgc > 7:405355/1‑140 (MQ=255)
gCGTCATCGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACcgcg > 7:473472/1‑140 (MQ=255)
tCATCGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGa > 2:1035870/1‑138 (MQ=255)
aTCGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACACCCGCGACAgg > 6:641052/1‑140 (MQ=255)
gggggTTAGCGCGTTTACGAGCCGCCCCCCACACCAGCAGAAGAAAACGCAAACGTTGCCGCCCTGCAGGCGGACGCGCCTGAATCACAGTATACGCGCGGGGGGTAGCGAGTTTTCCGTACGACACACCCGCGACCg < 2:34563/136‑1 (MQ=255)
ccGGGTTAGCGCGGTACCGATCCGCGCCCCACACCAGCAGCAGAGAACGCAAACGTTGATGACCTGCAGTCGGACGCGCCTTAATCACTGTATAAGCGCGGTGGGTATCGAGTTTTCCGGACTAGACAACCGCGACCGGa < 8:885977/139‑1 (MQ=255)
ggggTTAGCGCCGTTACGACCCGCCCCCCACAGCAGCAGCAGATAACGCAACCGTGGCAGTCCGGCAGTCGGACGCGCCTTAATACCAGTAAACGCGCGCGGGGTAGCGTGTTTTAGGGAAGACACAACCGCGACCGGAt < 8:215661/139‑1 (MQ=255)
ggTTAGCGACGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGAAAACGTTGCAGTCCAGCAGTCGGACGCGCCTGCATCACACTATAAGCGCGCAGGGTATCTAGTTTTACGGAAGAGAAAACCGCGACCCGaa > 2:694896/1‑137 (MQ=255)
ttAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGcc > 6:774897/1‑140 (MQ=255)
cgcCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACTCGCCTGAATAACAGTATAAGCGCGCTGGGTATCGAGGTTTACGGAAGAGGCTACCGCGACCGGATAGCCtt > 4:240814/1‑138 (MQ=255)
gTTACGACCCGCCCCCCACAGCAGCAGCAGAAACCGCAACCGTTGCAGACCTGAAGGCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGTAAGAGACAACCGCGACCGGATAGCCTTCCGGGa < 8:288476/140‑1 (MQ=255)
ttACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTTGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGaa > 5:772371/1‑140 (MQ=255)
aCGATCCGCGCCACACAGCCGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCggaac > 2:381745/1‑135 (MQ=255)
aTCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGAc > 5:62032/1‑140 (MQ=255)
cgcgCACCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGAAAACCGCGACCGGATAGCCTTCCGGGAAACGACCGc > 5:446911/1‑140 (MQ=255)
gcgcCCCACCGCAGCAGCACATAACCCAAACGTTGAAGTCCTGCAGTCGGCCGCGCCTCAATCACAGTAAACGCGCGCTGGTTATCTAGTTTTACGTAACAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGcc < 6:327095/140‑1 (MQ=255)
cgcCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGCCCGGATAGCCTTCCGGGAAACGACCGc > 3:832419/1‑138 (MQ=255)
ccccACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGccc > 3:1096420/1‑138 (MQ=255)
agcagcagcagATAACGCAAACGTTGCAGTCCAGAAGTCGGACGCGCCTGCATCACAGAATAAGCGCGCTGGGTCTAGAGTATTACGG‑AGAGACAACCTCGACCGCATAGCCTTCAGGGAAACGACCGCCCAGACCgg > 1:654594/1‑138 (MQ=255)
cagcagATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTcc > 6:290243/1‑139 (MQ=255)
agaataTACCGCAAAGTTTGCTGTCCTGCTGGCGGCCGCGCCTTAATCACCTTATACGCGCGGGGGGTATCGATTTTTCCGTAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTc < 1:785920/133‑1 (MQ=255)
gcatttAACGCAAAGGTTGCAGTCCTGCAGGGGTCCGCGCCTTAATCACTTTATACGCGCGGGGGTTTGCTTGTTTTACGGAAGAGACACCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCAcc < 8:740370/135‑1 (MQ=255)
gcagATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGCCCGGATAGCCTTCCGGGCAACGACCGCCCAGACCGGAAGTCAcc > 8:419393/1‑140 (MQ=255)
gcagATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCa > 2:439947/1‑138 (MQ=255)
agATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCAcc > 4:66707/1‑138 (MQ=255)
agATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTAAGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGACAAGAGCGGAAGTCAcc > 2:513121/1‑138 (MQ=255)
aTAACGCAAACGTTGCATGCGTGCAGGGGGACGCGCATTAATCAAATTATAAGCGCTCTGGGTATCGAGTTTTACGCAATAGACACCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGca < 8:670380/140‑1 (MQ=255)
tAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGc > 4:922528/1‑138 (MQ=255)
aaCGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTACAAGCGCGCTGGGTATCGAGTTTTACGGAAGCTCCAACCGCGACCGGATCGCCTTCCAGGAAACGACCGCCCAGACCGGTAGTCTCCAGcaca > 7:620822/1‑140 (MQ=255)
aacggTTGCTGTCCTGACGTCGCACGGGTCTTAATCACTGTATAAGGGCGGGGGTTATCTTGTTTTCCGTACGACACACCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCa < 1:70964/134‑1 (MQ=255)
aCGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCaa > 8:400532/1‑140 (MQ=255)
aCGTTGCAGGCGTGCAGGCGGACGCGCCTTATTCACAGAAAAAGCGCGCTGGGTATCTAGTTTTACGGAATAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCAcc < 4:881499/138‑1 (MQ=255)
cGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAac > 5:563919/1‑140 (MQ=255)
gTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCaa > 4:537966/1‑138 (MQ=255)
ttGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAACCGACCGCCCAGACCGGAAGTCACCAGCACATCACCAac > 1:1029132/1‑138 (MQ=255)
gctgTCCTGCAGTCGGACGCGCCTTAAGAACTTTATACGCGCGGGGGTTATCGAGTTTTCGGTAATAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGa < 8:663657/137‑1 (MQ=255)
cAGTCCTGCAGGCGGCCGCGCCTGAATCACAGTATACGCGCGCTGGGTATCGTGTTTTCCGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACg < 4:992848/138‑1 (MQ=255)
gTCCTGACGTCGGACCCGCCTCAACAACATTAAAAGCGCTCTGGGTATCGAGTTTTACGGAATATAAAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGaa < 4:571550/138‑1 (MQ=255)
tGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCg > 7:945504/1‑140 (MQ=255)
gCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATcc > 4:525004/1‑138 (MQ=255)
cAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCTAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGACCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCg > 4:607153/1‑138 (MQ=255)
cAGTCGGACGCGCCTGAATCACACTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTACCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCg > 1:392801/1‑138 (MQ=255)
gTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTa > 4:441887/1‑138 (MQ=255)
aCGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTc < 1:916565/103‑1 (MQ=255)
aCGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGc > 1:943020/1‑138 (MQ=255)
aCGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACCACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGc > 3:795370/1‑138 (MQ=255)
aCGCGCCTGAATCACAGGATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGATAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGc > 3:520251/1‑138 (MQ=255)
cgcCTTAATCACCGTATACGCGCGGGGGGAAGGGATTTTTAGGCAAGCCAAACCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTgg < 4:163670/138‑1 (MQ=255)
cgcCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCa > 6:1079550/1‑140 (MQ=255)
ccTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCa > 2:716578/1‑138 (MQ=255)
gAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCTGAAGTCACCAGCACATCACCACCACGAATATCCGTAGTCGCTGGCAGAt > 4:844258/1‑138 (MQ=255)
ataAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCCCCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTg > 4:1030840/1‑138 (MQ=255)
aGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACAGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCaa > 2:836340/1‑138 (MQ=255)
aGCGCGCTGGGTATAGAGTTTTACGGAAGATACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGACCAGAAAGCAAGACACCAGCACATAACCAACACGAAAATCCGTATTCCCTCGCAGAAGCTCAAGCTGCaa > 4:692873/1‑138 (MQ=255)
gcgggcggGGTATCGATTTTTCCGTAAGACACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatc < 5:746247/140‑1 (MQ=255)
gcgcgcTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatc > 7:458969/1‑140 (MQ=255)
ccgcgcTGGGTATCGAGTTTTCCGTAACACAAAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCaaa < 3:935349/137‑1 (MQ=255)
cgcTGGGTATCGAGTTTTACGGAAGCGACAACCGCGACCGGATAGCATTCCGGGAAACGACCGCCCAGACCGGAAGTCTCCAGCCCAGCACCAAAAAGAATATCCGTAATCGCTGGCAGATGCTCAAGCTGCAAatcctc > 8:481418/1‑140 (MQ=255)
cgcTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATATCCTTCCGGGACACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGCATATCAGGAGTCGCTGGCAGATGCTCAAGCTGCAAatcatc > 7:980697/1‑140 (MQ=255)
cgcTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATc > 5:791663/1‑104 (MQ=255)
cgcTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatcatc > 8:1023497/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAGCGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatcatc > 3:160629/1‑138 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACCTCACCAACACGAATATCCGTATTCTCTGGCAGATGCTCAAGCTGCAAATCATCCg > 8:610614/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCCAATCATCCg > 7:554482/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatcatc > 1:29736/1‑138 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatcatc > 1:143884/1‑138 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatcatc > 1:873716/1‑138 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatcatc > 3:355978/1‑138 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 7:185085/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 7:246577/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGAAAATCATCCg > 6:660783/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGACGCTCAAGCTGCAAatcatc > 1:225957/1‑138 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATACGTATTCGCTGGCAGCTGCTCAAGCTGAAAATCATACg > 6:257012/1‑140 (MQ=255)
ggggTATCGTTTTTTACGCAACACACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATcc < 2:993002/137‑1 (MQ=255)
gggttgcGAGTTTTACGGATGAGCCAACCGCGACCGGATAGCCTGCCGGGAAACGACCGCCCAGCCCGGAAGTCCCCAGCCCATCACCAACCCGAATATCCGTATTCGCTGGCAGATGCTAAAGAGGCAAATCAGCCg > 4:422547/7‑138 (MQ=255)
gggTCTCGAGTTTAACGTACTCGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg < 4:321033/138‑1 (MQ=255)
gggTATCTATTTTTCGTGATGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGTTGCTCAAGCTGCAAATCATCCGTa < 7:292651/140‑1 (MQ=255)
gggTATCGAGTTTTACGGAAGAGCCAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 2:26109/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGCCCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 1:1015468/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCACCACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 3:639383/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCCAGCTGCAAATCATCCg > 1:894196/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 1:991621/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 2:358230/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 1:1093693/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 1:528227/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAAAATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 3:97135/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATAACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 1:686280/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGAAAACCGCGAACGGATAGCCTTCCGGGAAACGACCGCCCAGACAGGAAGTCACCAGCACATCACCAACACTAATATCCGTATTCGCTGGCAGCTGCTCAAGCTGCAAATCATCCg > 3:9831/1‑138 (MQ=255)
gTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTa < 6:500162/140‑1 (MQ=255)
tttACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCa > 7:418474/1‑111 (MQ=255)
tttACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTAcc > 8:770426/1‑140 (MQ=255)
tACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTAcc > 2:435376/1‑138 (MQ=255)
agacACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCGGCTGCaa < 8:185103/140‑1 (MQ=255)
gagaCAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCGGCTGCAAt > 5:323935/1‑140 (MQ=255)
aagaCACCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCGGCTGCAAt < 8:561455/139‑1 (MQ=255)
aCAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCGGCTGCAATTAc > 5:11529/1‑140 (MQ=255)
|
TTCCGGCGTCATCGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCGGCTGCAATTAC > NZ_CP022686/2130690‑2130965
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
