Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A29 F2 I0 R1
|
207 |
10827.9 |
9263290 |
98.4% |
9115077 |
135.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,130,829 |
A→C |
6.7% |
V237G (GTT→GGT) |
mreC ← |
rod shape‑determining protein MreC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,130,829 | 0 | A | C | 6.7%
| 345.8
/ 2.2
| 180 | V237G (GTT→GGT) | mreC | rod shape‑determining protein MreC |
| Reads supporting (aligned to +/- strand): ref base A (129/33); new base C (5/12); total (134/46) |
| Fisher's exact test for biased strand distribution p-value = 4.16e-05 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 184 total aligned reads displayed.
CCGGCGTCATCGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCGGCTGCAATTAC > NZ_CP022686/2130692‑2130965
|
ggTCTTCGGGTTAGCGCTTTTACGATCCGCGCCCCACAGCTCCACCTGATAACGCAACCGTTCCTGTCTTGCTGGCGTAGGCGCCTGAATCACATTATAAGCGCGGTGGGTAGCGCGTTTTACGGATGAGACACCcgc < 6:348355/137‑1 (MQ=255)
gTCATCGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGAc > 4:947657/1‑140 (MQ=255)
aTCGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCgg > 1:350317/1‑140 (MQ=255)
cGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGCCCgg > 7:577977/1‑138 (MQ=255)
ggtttAGCGCCGTTACGATCCGCGCCCCACAGAAGAAGCAGAAAACGCAACCGTGGCAGTCCTGCTGTCGGACGCGCCTGAATCACTGTTTACGCTCGCGGGGTATGGTGTTTTACGTAAGAGAAAACCGCGACCGGATa < 2:848002/137‑1 (MQ=255)
ttACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTTCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTAAGGAAGAGACAACCGCGAACGGATAGCCTTCCGGGaa > 4:599158/1‑140 (MQ=255)
ttACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGaa > 2:117827/1‑140 (MQ=255)
ttACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGaa > 1:235304/1‑140 (MQ=255)
ttACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGaa > 2:546558/1‑140 (MQ=255)
ccGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGAc > 8:805559/1‑138 (MQ=255)
cgcCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGccc > 1:1136910/1‑140 (MQ=255)
cgcCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGccc > 2:1160055/1‑140 (MQ=255)
ccccACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGAATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGccc > 7:169794/1‑138 (MQ=255)
ccACAGAAGCAGCATAAAACGCAAACCTTGCAGTCCGGCTGGCGGACGCGCCTGAATCACATTAAACGCGCGCTGGGTATCGAGTTTTCGGGAATTTACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGAc < 4:872942/140‑1 (MQ=255)
gcagcagATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGCATAGCCTTCCGGGAAACGACAGCCCAGCCCGGAAg > 6:562792/1‑138 (MQ=255)
gATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGc > 3:858848/1‑140 (MQ=255)
tAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGcac > 2:36270/1‑140 (MQ=255)
cGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGAACGGATAGCCTTCCGGGACACGACCGCCCAGACCGGAAGTCACCAGCACAta > 1:430159/1‑139 (MQ=255)
aCGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGCCCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCAcc > 5:333212/1‑138 (MQ=255)
aCGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCAcc > 6:1117018/1‑138 (MQ=255)
cGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGCCCGGAAGTCCCCAGCACATCACCAac > 1:532416/1‑140 (MQ=255)
gTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGCCACCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCaa > 6:606138/1‑138 (MQ=255)
gTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGCCCGGATAGCCTTCCGGGAAACGCCCGCCCCGACCGGAAGTCACCAGCACATCCCCaa > 8:706757/1‑138 (MQ=255)
tgaatgccTGCTGTCGGCCGCGCCTGAATCACATTATACGCGCGCTGGGTAGCGATTTTTACGTAATAGACACCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACg < 2:308753/134‑1 (MQ=255)
gCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGa > 1:160136/1‑140 (MQ=255)
aGTCCTGCAGTCGGACTCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCAGGGAAACGACCGCCCAGACCGGCAGTCACCAGCACATCACCAACACGa > 6:198582/1‑138 (MQ=255)
gTCCTGAAGTCGGACGCGCCTTAATCACAGTATAAGCGCGCGGGGTATCGATTTTAACGTACGCTACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAata < 4:805235/140‑1 (MQ=255)
tGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCg > 4:639618/1‑140 (MQ=255)
gcctggcGGCCGCGCCTCAATCACATTAAACGCGCGCGGGTTATCGAGTTTACCGTAAGACACACCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATc < 5:251392/132‑1 (MQ=255)
cAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGCCAACCGCGCCCGGATAGCATTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATcgg > 7:938996/1‑136 (MQ=255)
cAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCg > 5:69200/1‑138 (MQ=255)
gTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTa > 5:775591/1‑138 (MQ=255)
ggACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCTGGAAACGACCGCCCAGACCGGAAGGCACCAGCACATCACCAACACGAATATCCGTAGTCGc > 2:544021/1‑140 (MQ=255)
aCGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCCCATCACCAACACGAATATCCGTATTCGc > 8:560785/1‑138 (MQ=255)
aCGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGc > 8:856081/1‑138 (MQ=255)
cgcCTTAATCACTTTATAAGCGCGCGGGGTATCGAGTTTTCCGGAACAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCa < 3:580150/140‑1 (MQ=255)
ccTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGa > 2:916090/1‑140 (MQ=255)
tGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGa > 6:1093996/1‑138 (MQ=255)
ctctataTGCGCGCGGGTTACCGAGTTTTACGTAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACAGCACCAACACGAATTTCCGTATTCGCTGGCAGATGCTCaa < 5:471990/135‑1 (MQ=255)
gTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGCCCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGc > 6:797808/1‑138 (MQ=255)
gTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTTGCAGATGCTCAAGc > 6:898674/1‑138 (MQ=255)
gTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGc > 6:156803/1‑138 (MQ=255)
gTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTg > 1:447456/1‑140 (MQ=255)
ataAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTg > 6:979114/1‑138 (MQ=255)
acgcgcgcTGGTTATTGAGTTTTAACTAAAATACAACCGCGCCCGGATTGACTTCAGGTAAACGACCTCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTTCaaa < 4:185132/138‑1 (MQ=255)
acgcgcgaGGGGAATCGAGGTGAACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCa < 8:433837/136‑1 (MQ=255)
aGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCaa > 5:836410/1‑138 (MQ=255)
gcgcgcTGGTTATCGAGTTTTACGCAAGAGAAAACCGCGACCGGAAAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatc < 3:811987/140‑1 (MQ=255)
gcgcgcTGGGTATCGAGTTTTACGGAAGAGACACCCGCGACCGGATAGCCTTCAGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACAAACACGAATATCCGTATTAGATGGCAGATGATCAAGCTGCAAatc > 4:918881/1‑140 (MQ=255)
gcgcgcTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAGCGACCGCCCAGACCGGAAGTGACCAGCACATCACCAACACGAATATCCTTATTCGCTGGCAGCTGCTCAAGCTGCAAatc > 2:449867/1‑140 (MQ=255)
ccgcgcTGGGTATCTAGTTTTACGGACGAGACACCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatc < 4:7747/139‑1 (MQ=255)
cgcgcTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAat > 7:986348/1‑138 (MQ=255)
gggcTGGGTATCCTTTTTTACGTACGACACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatc < 8:323336/136‑1 (MQ=255)
gctcTGTGTATCGAGTTTTACGGAAGTGAAACCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGAACGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatcat < 4:1040675/137‑1 (MQ=255)
gcgcTGGGTTTCGAGTTTTCCGGAATAGACATCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatc < 6:761231/138‑1 (MQ=255)
gcgcTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACTAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatc < 7:365260/138‑1 (MQ=255)
gcgcTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatc > 8:242941/1‑138 (MQ=255)
cgcTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCCCCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatcatc > 1:632536/1‑140 (MQ=255)
cgcTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatcatc > 4:533973/1‑140 (MQ=255)
cgcTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatcatc > 3:214131/1‑140 (MQ=255)
gcTGGGTCTCGAGTTTAACGTAAGAGCCAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatcat < 8:373767/138‑1 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACACCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCTCCAGCACCTCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 3:483927/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGCCCGGAAGTCACCAGCTCAGCACCAACACGAATTTCCGTATTCGCTGGCAGATGCTCATGCTGCAAATCATCCg > 4:669956/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 2:78101/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 3:1062213/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 1:179497/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 4:1096814/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 4:1181083/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACAAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 3:895301/1‑140 (MQ=255)
cTGGGTATCGAGTTATACGGAAGAGACAACCGCGACCGGATAGCCTTCCGTGAAACGCCCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAAGATCCGTATTCGCTGGCAGATGCTCAAGCTGCCTatcatc > 8:335696/1‑138 (MQ=255)
cTGGGTATCGAGATTTACGGAAGAGCCAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCCGAAGTCACCAGCACATCACCAACCCGAATATCCGTATACGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 3:970764/1‑140 (MQ=255)
gggTATCGAGTTTTACGTAAGAGAAAACAGCGACCGGATAGCCTTCCGTGAAACGACAGCCCAGACCGGAAGTCACCAGCACATAACAAACACGAATATCCGTATTCGCTGGCAGATGCTAAAGCTGCAAATAATCCg > 7:1094676/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGCCCGCCCAGCCCGGAAGTCACCAGCACATCACCACCACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 8:1001620/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGCCCGGAAGTCACCAGCACATCACCACCACGAATATCCGTATTCGATGGCAGATGCTCAAGCTGCAAATCATCCg > 5:487833/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGACGACACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 7:982792/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATccc > 7:657226/1‑137 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 5:1040321/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATAATCCg > 5:688234/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCACATGCTCAAGCTGCAAATCATCCg > 6:696245/1‑138 (MQ=255)
ggTATTGTGTTTTAGGTAAGAGAAAACCGCGACCGGATAGCATTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGt < 5:921920/138‑1 (MQ=255)
ggTATCGAGTTTACCGTATTCCACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTAc < 1:129522/140‑1 (MQ=255)
gTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTa > 6:1029384/1‑138 (MQ=255)
tATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACaa < 2:1136910/140‑1 (MQ=255)
aatgtaGTTTTACGGAACGACCAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACaa < 1:759271/135‑1 (MQ=255)
agctaGTTTTCCGGAATATACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCAACAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAAc < 4:1100582/136‑1 (MQ=255)
cGAGTTTTACGGAAGTGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCg < 4:860046/140‑1 (MQ=255)
gAGTTTTACGGAAGAGACAACCGCGACCGTATAGACTTCCGGGAAAAGACCTCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGATCAAGCTGCAAATAATCCGTACAACCGt > 3:815546/1‑140 (MQ=255)
tttACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTAcc > 4:528855/1‑140 (MQ=255)
tttACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTAcc > 4:391214/1‑140 (MQ=255)
tACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCgg > 4:246971/1‑140 (MQ=255)
tACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCgg > 3:754414/1‑140 (MQ=255)
tACGGAAGAGACAACCGAGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGCAAGTCACCAGCACATCACCAACACCAATATCCGTATTCGCTGGCAGATGCTCACGCTGCAAAACATACGTACAACCGGTAcc > 5:42830/1‑138 (MQ=255)
aCGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCg > 8:502040/1‑138 (MQ=255)
ggAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCGGc < 7:728504/138‑1 (MQ=255)
gagaCAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACGGTTACCGGCTGCa < 5:565320/138‑1 (MQ=255)
gccAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCAGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCGGCTGCAAt > 5:1023426/3‑138 (MQ=255)
acacCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCGGCTGCAATTAc < 3:391214/140‑1 (MQ=255)
aCAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGaa < 2:690036/48‑1 (MQ=255)
aCAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGaa > 1:690036/1‑48 (MQ=255)
aCAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCGGCTGCAATTAc < 3:217075/140‑1 (MQ=255)
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CCGGCGTCATCGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCGGCTGCAATTAC > NZ_CP022686/2130692‑2130965
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
