Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A29 F11 I0 R1
|
249 |
11230.8 |
10274356 |
98.4% |
10109966 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,130,829 |
A→C |
10.4% |
V237G (GTT→GGT) |
mreC ← |
rod shape‑determining protein MreC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,130,829 | 0 | A | C | 10.4%
| 390.5
/ 8.7
| 206 | V237G (GTT→GGT) | mreC | rod shape‑determining protein MreC |
| Reads supporting (aligned to +/- strand): ref base A (147/32); new base C (4/23); total (151/55) |
| Fisher's exact test for biased strand distribution p-value = 8.74e-12 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 209 total aligned reads displayed.
TTCCGGCGTCATCGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCGGCTGCAATTACGCG > NZ_CP022686/2130690‑2130968
|
ttCCGGCGTCATCGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACaa > 5:440489/1‑140 (MQ=255)
gccGGCGTCATGGGGTTTGGGCCGTTAGGATCGGCGCCCCACAGCAGCAGCAGATAACCAAAACGTTGCAGTCCTGAAGTCGGTCGCGCCTTAATCACAGTATAAGCGCGCGGGGTATCGAGTTTTACGTAAGAGACAAc < 6:768072/139‑1 (MQ=255)
ccGGCGTCATCGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAAcc > 2:455452/1‑140 (MQ=255)
gTCATCGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGAc > 5:903365/1‑140 (MQ=255)
cATCGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCTCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGAc > 4:51947/1‑138 (MQ=255)
aTCGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGGATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGCCAACCGCGACCgg > 1:1233468/1‑140 (MQ=255)
ggggTTAGCGCCGTTACGATCCGCCCCCCACAGCAGCCGCAGATAACGCAAACGTTGCAGTCCTCCAGTCGGACGCGCCTGAATCACAGTATACGCGCGCTGGGTAGCGAGTTTTACGGAAGACACACCCGCGACCGGAt < 2:1152634/139‑1 (MQ=255)
cGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGTGTTTTACGGAAGAGACCACCGCGACCgg > 3:1270763/1‑138 (MQ=255)
cgcCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCGGAATCACAGTATAAGCGCGCTGGGTATCGAGGTTTACGGAAGAGCCAACCGCGACCGGATAGCCTTcc > 7:972421/1‑140 (MQ=255)
ttACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGaa > 5:681027/1‑140 (MQ=255)
aCGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGaa > 4:16607/1‑138 (MQ=255)
aCGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGaa > 4:861503/1‑138 (MQ=255)
cgctCCGCCCCCCACAGCAGCTCAAGATAACCAAAACGTTCCTGCCTTCCTGGCGGAGCCGCTTTAAACCGATTATACGCCCGCTGGTTTTCGTTTTTTACGTAATATACACCCGCGACCGGATAGCCTTCCGGGAAACg < 2:11125/137‑1 (MQ=255)
ccGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGAc > 3:276898/1‑138 (MQ=255)
cgcgCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGc > 2:567566/1‑140 (MQ=255)
cgcCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGCCCGGATAGCCTTCCGGGAAACGACCGccc > 1:627432/1‑140 (MQ=255)
cgcCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATCGCCTTCCGGGAAACGACCGccc > 7:1095547/1‑140 (MQ=255)
cgcCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGc > 4:437042/1‑138 (MQ=255)
ccagccgcagAAAACGCAACCTGTGCTGTCCGGCAGTCGCACGCGCCTGATGCACATAAAACGGGCGCGGGGTAGCTTGTTTTCCGTCAGCCACACCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGaa < 8:550827/139‑1 (MQ=255)
cagcagATAACGCAAACGTTGCAGTCCTGCAGTCGGCCGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGCCAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCa > 8:374312/1‑140 (MQ=255)
cagcagATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGCCCGGAAGTcc > 5:583923/1‑139 (MQ=255)
gcagATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGCCAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCAcc > 6:458780/1‑140 (MQ=255)
gcagATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGACACGACCGCCCAGCCCGGAAGTCAcc > 5:759550/1‑140 (MQ=255)
gcagATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGCCCGCCCAGACCGGAAGTCAcc > 2:894493/1‑140 (MQ=255)
gATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCa > 4:744639/1‑138 (MQ=255)
gATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGc > 8:14539/1‑140 (MQ=255)
aaaatcAAACGTTTCTTTCCTGCTGTCGGACGCGCCTTAATAAAAGTATACTCGCGCTGGTTATCGATTTTTCCGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGGCACCAga < 4:930490/133‑2 (MQ=255)
aaCGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGcaca > 5:1117938/1‑140 (MQ=255)
cGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCCGCACATc > 7:24557/1‑140 (MQ=255)
aaaCGTTGCAGTCCTGCATTCGGAGGCGCCTTAACCACATTATAACCGCGCTGGTTAGAGATTTTTACGGAACATACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCAcc < 2:957762/140‑1 (MQ=255)
aCGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGACACGACCGCCCAGACAGGAAGTCACCAGCACATCACCaa > 1:598988/1‑140 (MQ=255)
aCGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGCCCGCCCAGACCGGAAGTCACCAGCACCTCACCaa > 7:189781/1‑140 (MQ=255)
gctgaccTGCAGTCGGACGCGCCTGAATCCCAGTATAAGCGCGCTGGTTATCGAGTTTAACGTAAGACACACCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGa < 6:837414/135‑1 (MQ=255)
cAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGaa > 2:1321717/1‑140 (MQ=255)
cTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACCACCGCGACCGGATAGCCTTCCGGGACACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATcc > 7:1147628/1‑140 (MQ=255)
tGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCCGCACCTCACCAACACGAATCTCCg > 8:71035/1‑140 (MQ=255)
gCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGAACGGATAGCCTTGCGGGAAACGCCCGCCCAGCCCGGAAGTCACCAGCACATCACCACCACGCATATcc > 4:759297/1‑138 (MQ=255)
cAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCCCATCACCAACACGAATATCCg > 3:205495/1‑138 (MQ=255)
cAGTCGGACGAGCATGAATCAAAGTATAAGCGCGCGGGGTAGCGAGTTTAACTGATTCGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTa < 6:940523/140‑1 (MQ=255)
aGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGt > 4:605621/1‑138 (MQ=255)
cgtaCGCGCCTTAATCACTGAATAAGCGCGTTGGTTATCGTTTTTTACGGAATATACACCCGCTACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCg < 1:888449/137‑1 (MQ=255)
ggACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACCCCCGCGCCCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGc > 8:1036082/1‑140 (MQ=255)
ggACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGc > 2:236777/1‑140 (MQ=255)
ggACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGc > 5:426870/1‑140 (MQ=255)
aCGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCACCACGAATATCCGTATTCGCTg > 1:775962/1‑140 (MQ=255)
aCGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGc > 3:589223/1‑138 (MQ=255)
gcgcCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTg > 3:952984/1‑138 (MQ=255)
cgcTTGAATCACTTTTTTCGCGCGCGGGGTATCGAGTTTTCGGGAATACAAACCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTgg < 3:114377/138‑1 (MQ=255)
acacaGTATACGCGCGCTGGGTATCGATTTTTCCGGAAGATACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCa < 8:454187/139‑1 (MQ=255)
caGTATACGCGGGCGGGGTAGCGAGTTTTCCGCACGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCaa < 4:643677/138‑1 (MQ=255)
caGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGATACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGTCAGATGCTCAAGc > 7:817999/1‑140 (MQ=255)
caGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGc > 1:1170697/1‑140 (MQ=255)
caGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGc > 5:164004/1‑140 (MQ=255)
aaGTATAAGCGCGCTGGTCATCTTTTATTACGGAAGACCCAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCaa < 3:341350/137‑1 (MQ=255)
aGTATAAGCGCGCTGGGTATCGAGTTTTAAGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACAAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCt > 6:52894/1‑140 (MQ=255)
gTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTg > 2:1119742/1‑140 (MQ=255)
gTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACAGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGc > 3:826275/1‑138 (MQ=255)
gTATAAGCGCGCTGGGTATCGAGTTTTAAGGAAGAGACAACCGCGCCCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCCCCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGc > 4:180395/1‑138 (MQ=255)
taAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCaa > 6:712358/1‑140 (MQ=255)
aGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATATCCTTCAGGTAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGATGGCTGAGGCTCAAGCTGCAAat > 6:325164/1‑140 (MQ=255)
gcgggcTGGGTAGCTAGTTTTTCGTAAGACACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCaaa < 3:51947/138‑1 (MQ=255)
gcgcgcTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatc > 5:1122422/1‑140 (MQ=255)
ccgcgcgGGTTATCTCCTTTAACGTACGAGCAAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAatc < 1:1017227/139‑1 (MQ=255)
cgcTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCACAAGCTGCAAatcatc > 7:577084/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACCACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCCCATCCACAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 7:41637/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGCCCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 8:149468/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGCCCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 1:1049359/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGACGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 7:386270/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCCCCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCCAATCATCCg > 7:1218545/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGCTGCTCAAGCTGCAAATCATCCg > 2:356474/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGTTGCAAATCATCCg > 5:317892/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCGAATCATCCg > 6:983366/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 1:109503/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 6:451970/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 2:317345/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 2:714632/1‑140 (MQ=255)
cTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 5:1259362/1‑140 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 3:98960/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg < 4:276898/138‑1 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 4:368985/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 3:633463/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 3:448517/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCg > 3:1026289/1‑138 (MQ=255)
gggTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATAATCCGTa > 7:1061339/1‑140 (MQ=255)
tattgtaGTTTTACGTAAGAGACACCCGCGACCGGATAGCCTTCCGTGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACa < 7:716508/134‑1 (MQ=255)
atcgttttttCCGGAAGCGACACCCGCGACCGGATCGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAAc < 1:922075/134‑1 (MQ=255)
aTCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGCCCGCCCAGACCGGAAGTCACCAGCACATCACAAACACGAATATCAGTATTCGCTGGCAGATGCTCCAGCTGAAAATCATACG‑ACAAcc > 6:240581/1‑140 (MQ=255)
tttACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTAcc > 7:463039/1‑140 (MQ=255)
tttACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTAcc > 1:447995/1‑140 (MQ=255)
tttACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTAcc > 1:255439/1‑140 (MQ=255)
tttACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACAAGCACATCACCCACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTAcc > 5:95190/1‑140 (MQ=255)
tACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTAcc > 4:1146861/1‑138 (MQ=255)
tACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCgg < 6:1134516/140‑1 (MQ=255)
aaCGGAAGACACACCCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCgg < 5:704276/139‑1 (MQ=255)
ccggactagaCAACGCCGACAGGTTAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCCCCAGCACATCACCAACTCGAATATCCGTATTCGCTGGCAGATGCTCAAGCGGCAAATCATCCGTACACCCGTTACCAGc < 8:1180359/133‑1 (MQ=255)
cccgAAGACCCACCCTCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCGGc < 2:164268/137‑1 (MQ=255)
gagaCAACCGCGACCGGATAGCCTTCCGGGAAACGACCTCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGGTCAAGCTGCAAATCATCCGTACAACCGTTACCGGCTTCa < 4:329424/138‑1 (MQ=255)
gagaCAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGATACCGGCTGCAAt > 6:695697/1‑140 (MQ=255)
aCAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGATGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGATCAAGCTGCAAATCATCCGTACAACCGTTACAGGCTGCAATTAc < 8:204605/140‑1 (MQ=255)
aaaCCGCGACCGGATAGCCTTCAGGGTAACGACCGACCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGATCAAGCTTCAAATCATCAGTACAACCGTTACCGGCTGCAATTa < 3:1217688/137‑1 (MQ=255)
|
TTCCGGCGTCATCGGGTTAGCGCCGTTACGATCCGCGCCCCACAGCAGCAGCAGATAACGCAAACGTTGCAGTCCTGCAGTCGGACGCGCCTGAATCACAGTATAAGCGCGCTGGGTATCGAGTTTTACGGAAGAGACAACCGCGACCGGATAGCCTTCCGGGAAACGACCGCCCAGACCGGAAGTCACCAGCACATCACCAACACGAATATCCGTATTCGCTGGCAGATGCTCAAGCTGCAAATCATCCGTACAACCGTTACCGGCTGCAATTACGCG > NZ_CP022686/2130690‑2130968
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
