Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A30 F36 I0 R1
|
275 |
10897.2 |
10515506 |
98.4% |
10347257 |
135.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,110,457 |
T→G |
11.4% |
K12N (AAA→AAC) |
rplM ← |
50S ribosomal protein L13 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,110,457 | 0 | T | G | 11.4%
| 473.0
/ 14.1
| 259 | K12N (AAA→AAC) | rplM | 50S ribosomal protein L13 |
| Reads supporting (aligned to +/- strand): ref base T (100/123); new base G (34/2); total (134/125) |
| Fisher's exact test for biased strand distribution p-value = 3.98e-09 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 264 total aligned reads displayed.
TTCAGAACGATGATGTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGAAT > NZ_CP022686/2110320‑2110593
|
ttCAGAACGATGATGTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑Gt > 1:1347573/1‑138 (MQ=255)
cAGAACGATGATGTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑Gttt < 1:838704/138‑1 (MQ=255)
aaGAAAGATGTTGTAATCACCTGTATCTACGTTCGGAGTGTATTACGCTTTGTGCTTACCGCGAAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑Gttt < 1:327867/137‑1 (MQ=255)
gAACGATGATGTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTa < 2:55273/138‑1 (MQ=255)
cGATGATGTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGtt < 8:516192/140‑1 (MQ=255)
cGATGATGTAATCACCGGTAGCTACGTGCGGAGTGTATTCCGCGTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGtt < 5:1010565/140‑1 (MQ=255)
atgTAATCTCCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTATCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCATTCGCGGTTTTAGGGttat > 4:441936/1‑136 (MQ=255)
atgTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGTCCCAGAGTTTTACCGGTCGCGTCAACAAAATACCCGTCGC‑GGTTTACGGTGTCt > 4:833232/1‑138 (MQ=255)
tAATCACCTGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGttt < 7:796198/140‑1 (MQ=255)
tAATCACCGGTATCTACGTGCTGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTAACTGTCGCGTAAACAACATACCAGTCGC‑GTTTTTCGGTTTCAGtttt > 5:731183/1‑140 (MQ=255)
tAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCTGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGt < 2:114552/138‑1 (MQ=255)
tCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGCCGAGCCAGTACAGTAGCCAGACGGACCAGAGTATACCCGCTCGCGTCAACAACATACAAGTCGC‑GTTTTACCGTTTAAGGttttta > 6:1172904/1‑137 (MQ=255)
cGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTCCCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTGTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTGTGGTTTAGCTGtt > 7:1000123/1‑139 (MQ=255)
cGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTATGGttttgggg > 1:91478/1‑133 (MQ=255)
cGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GGTTTACGGGTTGTGGTTTAGCTg > 1:865323/1‑138 (MQ=255)
gTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTgga > 2:702161/1‑136 (MQ=255)
gTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTa > 3:1197127/1‑138 (MQ=255)
gTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGGTTCTGGTTTTGCTGtt > 4:1260141/1‑137 (MQ=255)
tACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGt < 2:578393/138‑1 (MQ=255)
tACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGGTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGt < 4:1051053/138‑1 (MQ=255)
ccgAGTGTACTCCGCTCTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCTGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTa < 7:111884/138‑1 (MQ=255)
cGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCAt < 2:957804/138‑1 (MQ=255)
cGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGCTTAGCTGTAAAAGTTTTCATTa > 6:570723/1‑140 (MQ=255)
gAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTTCGGTTTCTGGTTTAGCTGTAAATGTTTTCATTaaa > 8:924098/1‑140 (MQ=255)
gAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTTGGTGGATAAGTTTTAAttt > 1:111459/1‑137 (MQ=255)
tgtATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTAGC‑GTTTTACGGTTTCTGGTTTAGCTGTATAAGTTTTGATTAAAAGc > 8:379483/1‑140 (MQ=255)
tggaTTCCGCTTGTTGCTTACCACGCAGGCGACGAGACAGTGCAGTATCCAGACGTCCCAGAGTTTTACCGGTCGATTCAACAACATACCAGGCGC‑GTTTTACGGTTTCTGGTTTATCTGTAAAAGTTTTCATTaaaa < 4:741807/135‑1 (MQ=255)
gtATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCTTTAAAAg > 4:259409/1‑138 (MQ=255)
gtATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTAAGGTTTCTGGTTTATCTGTTAAAGTTTTCATTAAAAg > 1:530620/1‑138 (MQ=255)
aTTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTa < 5:1214818/140‑1 (MQ=255)
aTTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGGCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTATCATTAAAAGCTTa < 8:871964/140‑1 (MQ=255)
ttCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCtt < 2:24184/138‑1 (MQ=255)
ttCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTAc < 5:1166576/140‑1 (MQ=255)
ttCCGCGTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTAc < 6:1295588/140‑1 (MQ=255)
tCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTAcc < 6:655060/140‑1 (MQ=255)
tCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTAcc < 7:543027/140‑1 (MQ=255)
ccGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTAc > 4:765634/1‑138 (MQ=255)
gCTTTGTGCTTACCGCGCAGGCGACGCGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATCCCAGTCGC‑GGTTTACGGTTTCGGGTGTAGCTGTAAAAGTTTTCATTTAAAGATTACCCaa > 7:745550/1‑140 (MQ=255)
gCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACACCATACCACGCGC‑GTTTTACGGTTTCGGGTTTAGCTTTAAAAGTGTTCATTAAAAGAGTACGCaa > 6:1280805/1‑140 (MQ=255)
gCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATCCCAGTCGC‑GGTTTACGGTTTATGGTTTAGGTGTAAAAGTTTTGATTAAAAGCTTACCCaa > 8:1196895/1‑140 (MQ=255)
cTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCa < 4:1197127/138‑1 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaata > 6:326315/1‑140 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaa < 3:537868/138‑1 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACAGGTCGCGTCAACAACATACCAGTCTC‑GGTTTACGGTTTGTGGGTTAGCTGTAAAAGTTTTAATTAAAAGCATTCACaatt > 5:207690/1‑139 (MQ=255)
tgtgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACTTACCCGTCGC‑GTTTTACGGTTTATGGTTTAGCTTTAAAAGTTTTCAATAAATGGTTACCAaataaa > 7:1209900/1‑140 (MQ=255)
tgtgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACCTACCAGTCGC‑GTTTTACGGTTTCTGGTGTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaata > 1:71382/1‑138 (MQ=255)
tgtgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTTAGGTTTATGGTTTATCTGTAAAAGTTTTCATTAAAAGCTTACGCaataaa > 8:1139672/1‑140 (MQ=255)
tgtgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GGTTTTAGGTTTCTGGTTTAGCTGTTAAAGTTTTCATTAAAATCTTACCCaataaa > 6:1138099/1‑140 (MQ=255)
tgtgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GGTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaata > 4:1112316/1‑138 (MQ=255)
tgtgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GGTTTACGGTTTAGGGTTTAGCTGTAAAAGTTTTCATTAAAAGGTTAACCaataaa > 7:446262/1‑140 (MQ=255)
tgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaataaa > 2:208143/1‑138 (MQ=255)
tgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTAACCaataaa > 4:581528/1‑138 (MQ=255)
tgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGGTTGTGGTTTTGCTGTAAAAGGTTTCATTAAAAGCGTACCCaataaa > 3:374315/1‑138 (MQ=255)
gCTTACCGAGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGGTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAg < 7:293933/140‑1 (MQ=255)
tACCGCGCAGGCGACGAGCCAGTTCATTATCCAGACGGCCCAGAGTTTTACCGGTAGCGTCAACAAGATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGGTTTCATTAAAAGCTTACCCAATAAATAGt < 2:1017323/138‑1 (MQ=255)
tACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTa < 5:946193/140‑1 (MQ=255)
aCCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTTAGGTTTCTGGTTTAGCTGTTAAAGTTTTCATTAAAAGCTTTCCCAATAAATAATTaa > 7:180113/1‑139 (MQ=255)
ccGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGATTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTaca < 5:804401/140‑1 (MQ=255)
gcgcAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACg < 8:678117/140‑1 (MQ=255)
gcAGGCGACGAGCCAGTTCAGTAGCCCGACGGCCCAGAGTTTTCCCGGTCGCGGCAACAACATACCAGTCGG‑GTTTTACCGTTTGTTGTGTTGCAGTAAAAAGTTTGAGTAAAGCATTACCCAATAAAAATTTAAAAGtt > 6:171334/1‑140 (MQ=255)
gacgaGCCAGTTCAGTAGCCAGACGTCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGaa < 7:462253/140‑1 (MQ=255)
gacgaGCCAGTTCAGTAGCCAGACGGCCCTGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTg < 2:303961/138‑1 (MQ=255)
gacgaGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTg < 3:232393/138‑1 (MQ=255)
gaGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAac > 4:123803/1‑138 (MQ=255)
gaGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTATACGGTTTATGGTTTATCTGAAAAAGTTTTCATTAAAATATTACAAAAAAAATAATTACACTTTGGTGaaa > 2:1189189/1‑137 (MQ=255)
aGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAaca < 1:924167/138‑1 (MQ=255)
ccAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTGTTAAGGTTTATGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACACAATAAATAGATACACGTTTGTGAACGCCCa > 6:1053807/1‑140 (MQ=255)
cAGGTCAGGAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCaa < 6:866604/140‑1 (MQ=255)
gTTCAGTAGCCAGACGGCCCAGAGTTTTACCAGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCaa < 3:606179/138‑1 (MQ=255)
cAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACCTACCACTCGC‑GGTTTTCGGGTTATGGGTTAGGTGTTAAAGTTTTAATTTAAAGCTTAACCAATAAATATTTAACCATTGGGGAACACCCAACCg > 1:213986/1‑138 (MQ=255)
tAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCt < 3:1303496/138‑1 (MQ=255)
tAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTc < 8:88498/140‑1 (MQ=255)
aGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGGTTCGGGTTTAGCTGTTAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGACCAACCAAACGTGTTAAAttg > 6:737559/1‑140 (MQ=255)
aGACGGCCCAGAGTTTTACCGGTCGCGTCAACAAAATACCAGTCGC‑GTTTTACGGTTTATGGTTTAGCTGTAAAAGTTTTCATTAAAAGCGTACCCAAAAAATAGTTACACCTTGGTGAACACCCAAAAGTCTTCAAttt > 6:1082800/1‑139 (MQ=255)
agagTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTTAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACAGCTTCCATTGTTGAGATTc > 6:473993/1‑140 (MQ=255)
gTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTca < 3:1161908/138‑1 (MQ=255)
gTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTca < 3:1241817/138‑1 (MQ=255)
ttACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGa < 5:559785/140‑1 (MQ=255)
ccGGTCGCGTCAACAACATACCAGTCGC‑GGTTTTCCGTTTGTGGTTTAGCTGTAAAAGTTTTTATTAAAATCTTAACCAATAAATATTTAAACCTTTGTGAACACCCCAACCGAGTAAATTGTTGATGGTCACACGAc > 3:671280/1‑138 (MQ=255)
ggTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACaa < 3:765634/138‑1 (MQ=255)
cgcgTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAg > 3:710648/1‑122 (MQ=255)
cgTCAACAACCTACCAGTCGA‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTcc < 2:997000/138‑1 (MQ=255)
gTCAACAACATACCCGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCg < 4:238614/138‑1 (MQ=255)
acaTACCAGTCGC‑GTTTTACGGTTTCTGTTTTAGCTGTTTATGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAAcc < 1:1189189/138‑1 (MQ=255)
caTACCAGTCGC‑GTTTTAAGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATATTTACACGTTGGTGAAAACCCAAACGTCTTCAATTTTTGAGGTTCACACGACAAAGTACGGCAAACCAAc > 7:644716/1‑140 (MQ=255)
aCCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTAcccc < 5:1071817/140‑1 (MQ=255)
ccAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTAccc < 4:1340540/138‑1 (MQ=255)
ccAGTCGC‑GTGTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACACAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTAccc < 1:37169/138‑1 (MQ=255)
gTCGC‑GTTTTACGGTTTCTGGTTTAGCTTTAAAAATTTTCATTAAAAGCGTACACAATAAAAAGTTACACGTTTGTGAACCCACAAACGTCTTCAATTCTTGAGGTTCACACGCCAAAGTCCGGCAAACCAACCCCttag > 5:897073/1‑138 (MQ=255)
tCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAAAAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGa > 8:245703/1‑140 (MQ=255)
cgc‑gTTTTACGGTTTCTGGTTTAGCTGTAAAATTGTTCATTAAAAGCTTACCCAATAAATAGTTACACGATTGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGGCCGGCAAACCTACCCCTTCGaa < 6:963983/140‑1 (MQ=255)
cgc‑gTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGCACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAATTACGGCAAACCTACCCCGTCg > 2:1266259/1‑138 (MQ=255)
cgc‑gTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGCACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCg > 4:642180/1‑138 (MQ=255)
cgc‑gTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCg < 3:287190/138‑1 (MQ=255)
cgc‑gTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCg < 3:891844/138‑1 (MQ=255)
cgc‑gTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 8:549573/140‑1 (MQ=255)
cgc‑gTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 7:931958/140‑1 (MQ=255)
cgc‑gTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTAACACGACAAAGTCCGGCAAACCTACCCCTTCg > 2:744482/1‑138 (MQ=255)
gc‑gTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTAc < 8:210846/50‑1 (MQ=255)
gc‑gTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTAc > 7:210846/1‑50 (MQ=255)
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TTCAGAACGATGATGTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGC‑GTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGAAT > NZ_CP022686/2110320‑2110593
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
