Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A29 F2 I0 R1
|
207 |
10827.9 |
9263290 |
98.4% |
9115077 |
135.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,110,457 |
T→G |
15.4% |
K12N (AAA→AAC) |
rplM ← |
50S ribosomal protein L13 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,110,457 | 0 | T | G | 15.4%
| 339.0
/ 14.1
| 209 | K12N (AAA→AAC) | rplM | 50S ribosomal protein L13 |
| Reads supporting (aligned to +/- strand): ref base T (75/95); new base G (34/4); total (109/100) |
| Fisher's exact test for biased strand distribution p-value = 1.68e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 213 total aligned reads displayed.
CGTTCAGAACGATGATGTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGAAT > NZ_CP022686/2110318‑2110593
|
cGTTCAGAACGATGATGTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGt > 2:434884/1‑140 (MQ=255)
tCAGAACGATGATGTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCACGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGtt < 6:429322/138‑1 (MQ=255)
cGATGATGTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGGCAACAACATACCAGTCGCGTTTTACgg < 7:320241/138‑1 (MQ=255)
cGATGATGTAATCACCGGTATCTACGTGCGGAGGGTATTCCGCTTTGTGCATACCGCGCAGTCGACGAGCCAGTTCAGTAGCAAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACgg < 6:1054989/138‑1 (MQ=255)
atgatgTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTc < 4:104533/140‑1 (MQ=255)
tgatgTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCTCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTGTTACGGTTTCt > 3:221691/1‑140 (MQ=255)
tgatgTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGtttgt > 4:355655/1‑138 (MQ=255)
tgatgTAATCACCGGGATCTACGTGCGGAGTGTATTCCGCGTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGGTTTACCGGTCGCGTCAACAACATACCAGTCTCGGTTTACGGTTTcg > 4:312727/1‑139 (MQ=255)
atgTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCt > 5:1115580/1‑138 (MQ=255)
atgTAATCACCAGTATCTAAGTGCGGAGTGTATTCCGATTTGTGCTTACCGAGCAGTCGACGAGCCAGGTCATTAGCAAGACGGCGCAGAGTTTTACAGGTCGCGTCAACAACATACCAGTCGCGTGTTACTGTTTCt > 8:810621/1‑138 (MQ=255)
tAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGttt > 3:1136129/1‑140 (MQ=255)
tAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGGGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGttt < 1:1112672/140‑1 (MQ=255)
aaaTCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTGCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGt < 6:758892/137‑1 (MQ=255)
tCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACAAGTCGCGTTTTACGGTTTCTTGGTTatg > 4:432311/1‑138 (MQ=255)
gttATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTaa < 3:452025/138‑1 (MQ=255)
ctATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTCGCCAGACGGCCCAGAGTGTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCGGTa > 5:681340/2‑138 (MQ=255)
gTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGTCGACGAGCCAGTTCAGTAGCCAGCCGTCCCAGAGTTTTAACTGACGCGTCAACACCATACCACTCGCGGTTTACTGTAGGAGGTTTAGCTGTAAAAGtttt > 8:282450/1‑138 (MQ=255)
gCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGCCGAGCCAGTTCAGTCGCCCGCCGGCCCAGAGTGTTACAGGTCGCGTCAACGACCTCACAGTCGCGGTTTTCGGTGTCTGGTTTAGCGGTAAATGTTTTCa > 8:889071/1‑138 (MQ=255)
gCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTTCGGTTTGTGGGTTTGCTGTTAAAGttttga > 7:668532/1‑136 (MQ=255)
gAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTGTTACGGGTTCTGGTTTAGCTGTTAAAGTTTTCATTa > 7:947760/1‑138 (MQ=255)
gtATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTAGCGGTCGCGTCAACAACATACCAGTCGCGTTTTAAGGGTTATGTTTTAGCTGTAAAAGTTTTCATTAAAAGCt > 3:889751/1‑140 (MQ=255)
tATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGc < 6:917703/138‑1 (MQ=255)
tATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCtt < 1:1069104/140‑1 (MQ=255)
ttCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCtt < 6:535740/138‑1 (MQ=255)
ttCCGCTTTGTGCGTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAATATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTAc < 4:16945/140‑1 (MQ=255)
tCCTCTTTGTGATTACCGAGCAGGCGACGATCCAGTTCAGTAGCCAGACGGCCCATAGTTTTACCGGTCGCGTAAACAAAATACCAGTCGAGGTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTa < 6:574409/138‑1 (MQ=255)
gCTTTGTGCTTACCGCGCAGGCGACGCGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGTTTACGGTTTGTGGTTTAGCTGTAAAAGTTTTGATTAAAAGCTTACCCaa > 1:685446/1‑140 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaata > 2:179232/1‑140 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaa < 6:856579/138‑1 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGGTAAATTTTTAATTAAAAGCGTAACCaaaa > 3:183170/1‑138 (MQ=255)
tttGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTGATTTAAAGCTTACCCaata > 3:655841/1‑140 (MQ=255)
tttGTGCTTACCGAGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaata < 1:1005727/140‑1 (MQ=255)
tgtgCTTACCGCGCCGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTGTACCGGTCGCGTCAACAACAGACCAGTCGCGTTTTACCGTTTCTGGGTTAGCTGTAAAAGTTATCATTAAAAGCTTACCCaataaa > 4:119411/1‑140 (MQ=255)
tgtgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaata < 7:1079478/138‑1 (MQ=255)
tgtgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTAACCaata > 6:704869/1‑138 (MQ=255)
tgtgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGTTTTCGGTTTCTGGGTTTGCTGTTAAAGTTTTAATTTAAAGCTTACCCaataaa > 4:389500/1‑140 (MQ=255)
tgtgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGTTTACGGTTTCTGGTTTAGCTGTAAAATTTTTCATTAAAAGCTTACCCaataaa > 1:245166/1‑140 (MQ=255)
tgtgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaata > 7:643863/1‑138 (MQ=255)
tgCTTACCGCTCAGGCGAAGAGCCAGTTAAGTAGCCATACGGCCCAGAGTTTTACCGTACGCGTCAACAACATACCAGTCGGGTTTAACCGGTGCGGGTTTACCTGTATAAGTTTTCATGAAAAGCATACCCaataaata > 4:80014/1‑140 (MQ=255)
tgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGCGTTTTACCGGTCGCGTCACCAACATACCAGTCGCGTTTAACGGGTTATGGTTTAAGGTTTAAATTTTTCATTAAAAGATTACCCaaaaaa > 7:401367/1‑138 (MQ=255)
tgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGTTTAAGGTTTGTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaataaa > 7:759817/1‑138 (MQ=255)
tgCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGTTTAAGGGTTCTGGGTTAGGGGTAAAAGGTGTCATTTAAATCTTACCAcataaa > 8:1048473/1‑138 (MQ=255)
ccGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTaca < 2:614018/140‑1 (MQ=255)
cgcgCAGGCGACGAGCCAGTTCAGTAGCCAGCCGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGTTTTAGGGTTCTGGGTTAGCTGGAAAAGTTTTCATTAAAAGCTGTCCCAAGAAATTGTTac > 6:997898/1‑138 (MQ=255)
gcgcAGGCGCCGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGTTTACGGTTTCTGGGTTAGCGGTTAAAGTTTTGATTAAAAGCTTACCCAATAACCAGGTACACg > 3:948008/1‑140 (MQ=255)
gcgcAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCCACAACATACCAGTCGCGGTTTTCGGTTTGTGGGTTAGGGGTATAAGTGTTGATTTAAAGCGTTCCCAATAAATAGTTACACg > 2:115457/1‑140 (MQ=255)
gcgcAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTaca < 5:911674/138‑1 (MQ=255)
gcgcAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGGTTAGGGGGTGGGGTTTTGCTGGTAAAATTTTGATTAAAAAGATACCCAAAAAATAATTtcaca > 1:196663/1‑139 (MQ=255)
gcgcAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGATTTACCGGTCGCGTCAACAACATACCAGTCGCGGTTAAGCGTTTAAGGGTTAACTGTAAAAATTTTAAATAAAAGCATACCCCAAAAATAATAacacc > 1:888270/1‑139 (MQ=255)
aGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGTTTTCGGGTTGTGGTTTTTGGGTAAAAGGTTTAATTAAAAGCTTACCCAATAAATAGTTACACGtt > 7:995002/1‑138 (MQ=255)
cgacgaGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGa < 1:643516/140‑1 (MQ=255)
gacgaGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACATCATACCAGTCGCGTTTTTCGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTg < 5:343791/138‑1 (MQ=255)
gacgaGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTg < 5:691404/138‑1 (MQ=255)
aGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACAcc < 1:570484/140‑1 (MQ=255)
ccAGGTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACAcc < 5:184401/138‑1 (MQ=255)
cAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACAccc < 7:983017/138‑1 (MQ=255)
aGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTAATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCaaa > 4:74963/1‑140 (MQ=255)
aGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTAAGGGTTCTGGTTTTGCAGTAAAAGTTTTGATTAAAAGCTTACCCAATAAATAATTACACGTTGGTGAACACCCaaa > 1:489178/1‑140 (MQ=255)
ttCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACCTACCAGTCGCGGTTTACGGGTTCTGGTGTAGCTGTAAAAGTTTTGATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCaaa > 5:631960/1‑138 (MQ=255)
ttCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTTCGGTTTCTTGTTTTGCTGTAAAAGTTTTAATTAAAAGCTTACCAAATAAATAGTTACACGTTGGTGAAAACCCaaa > 6:182618/1‑138 (MQ=255)
cactAGCCATACGGCCCAGAGTATTACCGGGCGCGTCATCAACATAGCAGTCGCGATTTACGGTTTCTGGTTTAGCTGTAAAAGTTGTCATTAAAAGCTTACGCAATAAATAGTTACACGTTGGTGAACACCCATACg < 8:857946/135‑1 (MQ=255)
cAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTGAGGTTTAGCTGTAAAATTTTTCATTAAAAGCTTACCCAATAAATAGTTAAACGTTGGTGAACAACCAAACg > 6:1106454/1‑138 (MQ=255)
cAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACg < 5:964177/138‑1 (MQ=255)
tAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTTCGGGTTAGGGTTTATCTGTAAAAATTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGCACACCCAAAccgcgtc > 4:224189/1‑134 (MQ=255)
tAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTTAAAGTTTTAATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTc > 1:617003/1‑140 (MQ=255)
tAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTc < 1:176948/140‑1 (MQ=255)
aCGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTAAGGGTTCTGGTTTATCTGTAAAAATTTTAATTAAAAGCTTACCCAAAAAATAATTAAAAGTTGGTGAACACCCAAACGTCTTCAAttt > 6:144352/1‑137 (MQ=255)
aCGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGGTTTACGGGTTCTGGTTTAGCTGTTAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGGGAACCCCCAAACGTCTTCAAttg > 8:108024/1‑138 (MQ=255)
gagTTTTACCGGGCGCGTCAACAACATACCAGTCGCGTTTTAATGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTAACCAATAAATAGTTACACGTTGTTGAAAACCCAAACGTCTTCAATTGTTGAGGtt < 5:78835/138‑1 (MQ=255)
gTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTGTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTcaca < 2:1196038/140‑1 (MQ=255)
tACCGGTCGCGTCAACAACATACCAGTCGCGGTTTACGGTTTATGGTTTAGCTGTAAAAGTTTTCAATAAAAGCTTACCCCATAAATATTTACACCTTGGTGAACACCCAAACGTCTTAAAGTGTTGAGGTTCACCCGAc > 2:1109145/1‑140 (MQ=255)
aCCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGa < 5:1027282/138‑1 (MQ=255)
ccGGTCGCGTCAACAACAAACCAGTCGCGTTTTACGCGTTAGGGGTTATGTGTAAAATTTATAAATAAAAGCTTAACCAATAAAAATTTAAACCTTTGTGAACACCCACACCTAATAAAAATTTGAGGTTcaccccac > 6:396300/1‑133 (MQ=255)
gTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCaataa < 1:1195217/80‑1 (MQ=255)
gTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCGGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGt > 2:854446/1‑140 (MQ=255)
cgcgTCAACAACATACGAGTCGCGTGTTACCGTTAGTGGTGAAGCAGTAAAATGTTTCATTAAAAGCGTAACCAATAAATAGTTACACGTTGGTGACCACCCAAACGGATTCAATTGTTGGTGTGAACACCACCAAGt > 8:664517/1‑138 (MQ=255)
cgcgTCAACAACATACCAGTCGCGTTTTACGGGTTCTGGGTTAGGTGGAAAAGTTTTGATTAAAAGCTTAACCAATAAATAGTTACACGTTGGTGAACACCCAAACGTATTAAATTGTTTAGGTTCACCCGCCAAAGtac > 1:923581/1‑138 (MQ=255)
cgTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTcc < 6:489970/138‑1 (MQ=255)
gTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGc < 2:830726/140‑1 (MQ=255)
acaTACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAAcc < 7:767904/138‑1 (MQ=255)
acaTACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAAcc < 6:285143/138‑1 (MQ=255)
acaTACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTa < 2:575625/140‑1 (MQ=255)
tACCAGTCGCGTTTTACGGTTTCTGGGTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCGTCAATTGTTGAGGTTCACACGACAAAGTCCCGCAAACCTAccc > 3:733687/1‑140 (MQ=255)
ccAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACCCCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTAccc > 7:208732/1‑138 (MQ=255)
gTCGCGTTTTACGGTTTCTGGTTTATCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAAAACCCAAACGTCTTCAATTTTTTAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCg > 2:30120/1‑140 (MQ=255)
tCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCgc > 3:61774/1‑139 (MQ=255)
tCGCGTTTTACGGGTTCTGGTTTAGCGGTAAAAGTTTTCAATAAAATCTTACCCAATAAATAGTTAAAAGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAATGCCGGCCAACCTACCCCTTCgc > 3:1014961/1‑139 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCACTAAATAGTTACACGTTGGTGAACACCCAAACGTATTCATTTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 1:633035/140‑1 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTCCACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCg < 8:59928/138‑1 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCg < 7:520639/138‑1 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCg < 8:643863/138‑1 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGac < 4:261107/140‑2 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 1:361949/140‑1 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTAGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 2:802518/140‑1 (MQ=255)
cgcgTTTTACGGTTTCTGGTTTAGATGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCg < 7:128700/138‑1 (MQ=255)
cgcgGTTTACGGTGTCTGGTTTAGCTGTAAAAGTTTGCATTAAAAGCTTACCCAATACATAGTTACACGTTGGCGAACACCCAAACGTATTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCg < 7:473692/138‑1 (MQ=255)
cgcgGTTTACGGGTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGaa < 2:896114/140‑1 (MQ=255)
gcgTTTTACGGTTTCTGGTTTAGCTTTAAAAGTTTTCATTAAAAGCTTACCCAAAAAATAGTTACACGTTGGTGACCCCCCCAACGTCTTCAATTGTTGAGGTTCACACGACAAATTACGGCCAACCTACCCCTTAGa > 7:722163/1‑138 (MQ=255)
gcgTTTTACGGTTTCTGGTTTAGCTGTAAAAGGTTTAATTAAAATCTTTCCCAATAAATATTTACACGTTGTTTAAAACCCAAACTTCATCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTACGAAt > 4:876858/1‑140 (MQ=255)
gcgTTTTACGGTTTATGGTTTAGATGTAAAAGTTTTAATTAAAAGCTTAACCAATAAAAAGTTAAACGTTGGTGAACACCCAAACGTCATAAAATTTTGATGTTAACAAGACAAATTCCCGCAAACCTAacccatagc > 8:423713/1‑133 (MQ=255)
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CGTTCAGAACGATGATGTAATCACCGGTATCTACGTGCGGAGTGTATTCCGCTTTGTGCTTACCGCGCAGGCGACGAGCCAGTTCAGTAGCCAGACGGCCCAGAGTTTTACCGGTCGCGTCAACAACATACCAGTCGCGTTTTACGGTTTCTGGTTTAGCTGTAAAAGTTTTCATTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGAAT > NZ_CP022686/2110318‑2110593
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
