Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F3 I160 R1
|
220 |
104.1 |
6051714 |
95.9% |
5803593 |
84.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
1,761,952 |
G→C |
H331D (CAT→GAT) |
ydiJ ← |
FAD‑binding and (Fe‑S)‑binding domain‑containing protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 1,761,952 | 0 | G | C | 100.0%
| 331.5
/ NA
| 87 | H331D (CAT→GAT) | ydiJ | FAD‑binding and (Fe‑S)‑binding domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (45/42); total (45/42) |
GCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTCAACCATAAACGG > NZ_CP009273/1761865‑1762036
|
gcgcCTCATCATCACCAGCAAATTCCCTAAGGTTCAGGCCGGGCAACTTTTGGTAAGGCACATCGGTAATCAACTCGCTGACGGAATccc < 1:2378311/90‑1 (MQ=255)
gcgcCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATccc < 1:788711/90‑1 (MQ=255)
cgcCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCa > 1:2293297/1‑90 (MQ=255)
cgcCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCa > 2:1534666/1‑90 (MQ=255)
gcCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAg < 2:900385/90‑1 (MQ=255)
ccTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGa < 2:2720844/90‑1 (MQ=255)
ccTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGa > 1:630628/1‑90 (MQ=255)
cTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGAc < 1:998757/90‑1 (MQ=255)
cTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGAc < 2:786292/90‑1 (MQ=255)
catcatcaCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACag > 2:896470/1‑89 (MQ=255)
catcatcaCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACaa > 2:2400729/1‑90 (MQ=255)
catcatcaCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACaa > 1:619815/1‑90 (MQ=255)
catcatcaCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACaa > 1:442123/1‑90 (MQ=255)
tcatcaCCAGCAAATTCCACAATGTTTAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAata > 2:1045864/1‑90 (MQ=255)
catcaCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAatat < 2:570919/90‑1 (MQ=255)
caCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCtt > 1:1840785/1‑90 (MQ=255)
aCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTc > 1:2608839/1‑90 (MQ=255)
aGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCcg > 2:1129686/1‑90 (MQ=255)
aGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCcg > 1:1136148/1‑90 (MQ=255)
gCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCcgc > 1:1509708/1‑90 (MQ=255)
aaTTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGcc > 2:2355424/1‑90 (MQ=255)
aTTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCa < 2:2933659/90‑1 (MQ=255)
ttCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAg > 2:550240/1‑90 (MQ=255)
ccACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGAt > 2:2795063/1‑90 (MQ=255)
acaATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTc < 1:1818002/90‑1 (MQ=255)
acaATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTc < 2:1840785/90‑1 (MQ=255)
caATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCa > 2:775405/1‑90 (MQ=255)
aaTGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAg < 2:1361680/90‑1 (MQ=255)
aTGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGc > 2:1818636/1‑90 (MQ=255)
aTGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGc < 2:1685466/90‑1 (MQ=255)
gTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCAc < 1:1393314/90‑1 (MQ=255)
gTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCAc > 2:1565137/1‑90 (MQ=255)
gTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCAc > 1:2149838/1‑90 (MQ=255)
tCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACtt < 2:31020/90‑1 (MQ=255)
cAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACttt > 2:1368269/1‑90 (MQ=255)
cAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACttt > 2:2755818/1‑90 (MQ=255)
cGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGt > 2:1786182/1‑90 (MQ=255)
cGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGt > 1:2325032/1‑90 (MQ=255)
gAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTc < 2:2854978/90‑1 (MQ=255)
gAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTc > 1:2451242/1‑90 (MQ=255)
gAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTc > 1:1400159/1‑90 (MQ=255)
aGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTcc > 1:595863/1‑90 (MQ=255)
aGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTcc > 1:559043/1‑90 (MQ=255)
aGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTcc > 2:1325761/1‑90 (MQ=255)
gCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCa < 2:293407/90‑1 (MQ=255)
cATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCAc < 1:1799623/90‑1 (MQ=255)
cATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCAc < 1:1234898/90‑1 (MQ=255)
aTCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCAcc < 1:1138526/90‑1 (MQ=255)
aTCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCAcc < 2:2293297/90‑1 (MQ=255)
aTCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCAcc < 1:2795063/90‑1 (MQ=255)
aTCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCAcc < 1:627086/90‑1 (MQ=255)
aTCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCAcc < 1:820471/90‑1 (MQ=255)
ctctTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCAc < 1:100132/75‑1 (MQ=255)
ctctTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCAc > 2:100132/1‑75 (MQ=255)
ctTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGtct < 1:1684099/90‑1 (MQ=255)
tGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTctct > 2:1448395/1‑90 (MQ=255)
aGGCACATCGGTAATCAACTCGCTGACGGAATccc < 2:1503004/35‑1 (MQ=255)
aGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGa > 1:1992917/1‑90 (MQ=255)
aGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGa > 1:521243/1‑90 (MQ=255)
aGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGa > 1:862852/1‑90 (MQ=255)
aGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGa > 2:844660/1‑90 (MQ=255)
aGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGa > 1:894223/1‑90 (MQ=255)
aGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGa > 1:293311/1‑90 (MQ=255)
ggCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGaa > 1:581793/1‑90 (MQ=255)
ggCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGaa > 1:2436975/1‑90 (MQ=255)
ggCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGaa > 2:1476489/1‑90 (MQ=255)
cGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGccc < 2:2957696/90‑1 (MQ=255)
cGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGccc < 2:2325032/90‑1 (MQ=255)
cGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGccc < 2:1400159/90‑1 (MQ=255)
tAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCa < 1:2418433/66‑1 (MQ=255)
tAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCa > 2:2418433/1‑66 (MQ=255)
tAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCcgcg > 2:936102/1‑90 (MQ=255)
cAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTc < 2:2451242/90‑1 (MQ=255)
cAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTc < 1:2400729/90‑1 (MQ=255)
cAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTc < 2:1874801/90‑1 (MQ=255)
cAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTc < 2:1722766/90‑1 (MQ=255)
cAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTc < 2:1562372/90‑1 (MQ=255)
cAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTc < 2:1509708/90‑1 (MQ=255)
cAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTc < 2:1436031/90‑1 (MQ=255)
cAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTc < 2:1186203/90‑1 (MQ=255)
cAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTc < 1:936102/90‑1 (MQ=255)
cAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTc < 1:2135254/90‑1 (MQ=255)
cAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTc < 1:2258651/90‑1 (MQ=255)
aaCTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTCa < 2:894223/90‑1 (MQ=255)
aCTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTCaa > 1:2998543/1‑90 (MQ=255)
cTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTCAAc > 1:949301/1‑90 (MQ=255)
cGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTCAACCa > 1:344196/1‑90 (MQ=255)
ggAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTCAACCATAAACgg < 1:2355424/90‑1 (MQ=255)
ggAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTCAACCATAAACgg < 1:1476489/90‑1 (MQ=255)
ggAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTCAACCATAAACgg < 2:2755319/90‑1 (MQ=255)
|
GCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTCAACCATAAACGG > NZ_CP009273/1761865‑1762036
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTCAACCATAAACGGCGCGTTACGCAGC > NZ_CP009273/1761856‑1762049
|
CATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCA > SRR3722030.2334840/1‑100 (MQ=60)
TCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGA > SRR3722030.640416/1‑100 (MQ=60)
CAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGAC < SRR3722030.1975797/100‑1 (MQ=60)
ATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAA > SRR3722030.448839/1‑100 (MQ=60)
ATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAA > SRR3722030.629428/1‑100 (MQ=60)
GCGCCTCATCATCACCAGCAAATTCCCTAAGGTTCAGGCCGGGCAACTTTTGGTAAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATC < SRR3722030.2421565/100‑1 (MQ=60)
GCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATC < SRR3722030.800847/100‑1 (MQ=60)
GCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTT > SRR3722030.1872121/1‑100 (MQ=60)
CCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTC > SRR3722030.2656742/1‑100 (MQ=60)
CTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCC < SRR3722030.1013882/100‑1 (MQ=60)
CATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCG > SRR3722030.1153085/1‑100 (MQ=60)
ATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGC > SRR3722030.1534000/1‑100 (MQ=60)
ATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCAC > SRR3722030.2188317/1‑100 (MQ=60)
ACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTG < SRR3722030.1848789/100‑1 (MQ=60)
ATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGT > SRR3722030.2367236/1‑100 (MQ=60)
TGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTC > SRR3722030.1422197/1‑100 (MQ=60)
TGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTC > SRR3722030.2496011/1‑100 (MQ=60)
gacagGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCC < SRR3722030.101612/95‑1 (MQ=60)
GTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCC < SRR3722030.1415219/100‑1 (MQ=60)
GTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCC > SRR3722030.605090/1‑100 (MQ=60)
GTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCC > SRR3722030.567692/1‑100 (MQ=60)
tgtataagagacagGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTAC < SRR3722030.2462523/86‑1 (MQ=60)
CATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACC < SRR3722030.1829898/100‑1 (MQ=60)
CATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACC < SRR3722030.1253109/100‑1 (MQ=60)
ATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCG < SRR3722030.636812/100‑1 (MQ=60)
ATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCG < SRR3722030.833073/100‑1 (MQ=60)
ATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCG < SRR3722030.2846669/100‑1 (MQ=60)
ATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCG < SRR3722030.1155489/100‑1 (MQ=60)
TCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCctgtctcttatacacatctgacgctgccgacgacatggccagtgt > SRR3722030.1527129/1‑55 (MQ=60)
TCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGA > SRR3722030.2027921/1‑100 (MQ=60)
TCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGA > SRR3722030.297590/1‑100 (MQ=60)
TCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGA > SRR3722030.876096/1‑100 (MQ=60)
TCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGA > SRR3722030.907943/1‑100 (MQ=60)
TCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGA > SRR3722030.529256/1‑100 (MQ=60)
CTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAA > SRR3722030.2481425/1‑100 (MQ=60)
CTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAA > SRR3722030.590811/1‑100 (MQ=60)
CTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAG < SRR3722030.1711442/100‑1 (MQ=60)
TCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTCAA > SRR3722030.3053789/1‑100 (MQ=60)
CGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTCAAC > SRR3722030.963792/1‑100 (MQ=60)
GTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTCAACCA > SRR3722030.349296/1‑100 (MQ=60)
CAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTCAACCATAAAC < SRR3722030.2173418/100‑1 (MQ=60)
CAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTCAACCATAAAC < SRR3722030.2299471/100‑1 (MQ=60)
CAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTCAACCATAAAC < SRR3722030.2444472/100‑1 (MQ=60)
CAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTCAACCATAAAC < SRR3722030.950420/100‑1 (MQ=60)
GACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTCAACCATAAACGGCGCGTTA > SRR3722030.2491524/1‑100 (MQ=60)
ACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTCAACCATAAACGGCGCGTTAC > SRR3722030.933793/1‑100 (MQ=60)
GGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTCAACCATAAACGGCGCGTTACGC < SRR3722030.1500076/100‑1 (MQ=60)
GGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTCAACCATAAACGGCGCGTTACGC < SRR3722030.2398239/100‑1 (MQ=60)
ATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTCAACCATAAACGGCGCGTTACGCctg > SRR3722030.604037/1‑97 (MQ=60)
ATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTCAACCATAAACGGCGCGTTACGCAGC > SRR3722030.2424781/1‑100 (MQ=60)
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CATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCCGCGCCTCAACCATAAACGGCGCGTTACGCAGC > NZ_CP009273/1761856‑1762049
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
