Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F5 I97 R1
|
275 |
44.0 |
1733530 |
96.5% |
1672856 |
122.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
800,612 |
A→C |
T552P (ACC→CCC) |
ybhJ → |
hydratase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 800,612 | 0 | A | C | 84.6%
| 100.9
/ 10.8
| 39 | T552P (ACC→CCC) | ybhJ | hydratase |
| Reads supporting (aligned to +/- strand): ref base A (3/3); new base C (17/16); total (20/19) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.24e-01 |
AGGGCTTTGTGAAAGGGGCAACTCAGCAACCGCTGATTTACGGGCCGAAC‑ATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCACCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGTCTGGCGGAGTTTACCCTGTCTCGCCGCGATCCCGGTTATGTTAGCAGAAGTAAAGCGACTGCTGAGCTGGAAAAT > NZ_CP009273/800478‑800743
|
aGGGCTTTGTGAAAGGGGCAACTCAGCAACCGCTGATTTACGGGCCGAAC‑ATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCcg < 2:198715/138‑1 (MQ=255)
tgtgAAAGGGGCAACTCAGCAACCGCTGATTTACGGGCCGAAC‑ATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACt > 1:147116/1‑138 (MQ=255)
tgtgAAAGGGGCAACTCAGCAACCGCTGATTTACGGGCCGAAC‑ATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACt > 1:491774/1‑138 (MQ=255)
ggggCAACTCAGCAACCGCTGATTTACGGGCCGAAC‑ATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCACCGACGAACTGAttcctt > 1:364278/1‑139 (MQ=255)
aaCTCAGCAACCGCTGATTTACGGGCCGAAC‑ATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGt > 2:186546/1‑139 (MQ=255)
aaCTCAGCAACCGCTGATTTACGGGCCGAAC‑ATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGt < 2:215255/139‑1 (MQ=255)
cTCAGCAACCGCTGATTTACGGGCCGAAC‑ATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTg > 1:605150/1‑138 (MQ=255)
aGCAACCGCTGATTTACGGGCCGAAC‑ATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGTTTCCTTCCGGTGAAAc < 1:124902/139‑1 (MQ=255)
aGCAACCGCTGATTTACGGGCCGAAC‑ATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAAc > 1:75073/1‑139 (MQ=255)
cAACCGCTGATTTACGGGCCGAACAATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAAcc > 2:56131/1‑139 (MQ=255)
cAACCGCTGATTTACGGGCCGAAC‑ATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACct > 1:523711/1‑139 (MQ=255)
cTGATTTACGGGCCGAAC‑ATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACCtcttct > 2:604001/1‑138 (MQ=255)
tACGGGCCGAAC‑ATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGt < 2:75073/138‑1 (MQ=255)
ggCCGAAC‑ATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCaaa < 2:764026/139‑1 (MQ=255)
cGAAC‑ATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATcc > 2:822644/1‑139 (MQ=255)
aC‑ATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGAt < 1:822644/139‑1 (MQ=255)
aC‑ATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGAt < 2:666290/139‑1 (MQ=255)
aaaGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGt < 2:605150/138‑1 (MQ=255)
gACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGTCTgg < 1:56131/139‑1 (MQ=255)
aCTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCACCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGTCTGGc < 2:794837/139‑1 (MQ=255)
cTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGTCTGGCg > 2:317436/1‑139 (MQ=255)
ggCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCcga < 1:807646/79‑1 (MQ=255)
ggCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCcga > 2:807646/1‑79 (MQ=255)
ggCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGTCTGGCg > 1:558440/1‑137 (MQ=255)
ggCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGTCTGGCg > 2:585864/1‑137 (MQ=255)
ggCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCACCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGTCTGGCg > 1:639252/1‑137 (MQ=255)
ccGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACTTCTTCTTATCGTTCAAATCCGATTGGTCTGGCGGAGt < 2:251714/139‑1 (MQ=255)
gcTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGaaa > 1:546329/1‑86 (MQ=255)
gcTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGaaa < 2:546329/86‑1 (MQ=255)
tCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAATGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGTCTGGCGGAGTTTACCCTGTCTCGCCGCGATCCCGGTTa > 2:243203/1‑139 (MQ=255)
gTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCACCGACGAACTGa < 1:753295/55‑1 (MQ=255)
gTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCACCGACGAACTGa > 2:753295/1‑55 (MQ=255)
gTCCTGAAAGTGTGCTCGAAGAGCCTCGACGAAGTGACCCCCACCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGTCTGGCGGAGTTTACCCTGTCTCGCCGCGATCCCGGTTAt < 2:109063/138‑1 (MQ=255)
aaaGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGTCTGGCGGAGTTTACCCTGTCTCGCCGCGATCCCGGTTATGTTAGCa < 1:562666/139‑1 (MQ=255)
aaaGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGTCTGGCGGAGTTTACCCTGTCTCGCCGCGATCCCGGTTATGTTAGCa < 1:24019/139‑1 (MQ=255)
tgCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGTCTGGCGGAGTTTACCCTGTCTCGCCGCGATCCCGGTTATGTTAGCAGAAGt > 2:24026/1‑138 (MQ=255)
gCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGTCTGGCGGAGTTTACCCTGTCTCGCCGCGATCCCGGTTATGTTAGCAGAAGTa > 1:246128/1‑138 (MQ=255)
gAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGTCTGGCGGAGTTTACCCTGTCTCGCCGCGATCCCGGTTATGTTAGCAGAAGTAAAg < 1:367897/137‑1 (MQ=255)
gacgaAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGTCTGGCGGAGTTTACCCTGTCTCGCCGCGATCCCGGTTATGTTAGCAGAAGTAAAGCGACTGCTGAGc < 1:740128/139‑1 (MQ=255)
accacccccGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGTCTGGCGGAGTTTACCCTGTCTCGCCGCGATCCCGGTTATGTTAGCAGAAGTAAAGCGACTGCTGAGCTGGAAAAt < 2:523711/138‑1 (MQ=255)
accacccccGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGTCTGGCGGAGTTTACCCTGTCTCGCCGCGATCCCGGTTATGTTAGCAGAAGTAAAGCGACTGCTGAGCTGGAAAAt > 2:333008/1‑138 (MQ=255)
|
AGGGCTTTGTGAAAGGGGCAACTCAGCAACCGCTGATTTACGGGCCGAAC‑ATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCACCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGTCTGGCGGAGTTTACCCTGTCTCGCCGCGATCCCGGTTATGTTAGCAGAAGTAAAGCGACTGCTGAGCTGGAAAAT > NZ_CP009273/800478‑800743
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGTGTTTATCAGGGCTTTGTGAAAGGGGCAACTCAGCAACCGCTGATTTACGGGCCGAACATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCACCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGTCTGGCGGAGTTTACCCTGTCTCGCCGCGATCCCGGTTATGTTAGCAGAAGTAAAGCGACTGCTGAGCTGGAAAATCAGCGTCTGGCGGGGAAT > NZ_CP009273/800468‑800761
|
cagGTTTATCAGGGCTTTGTGAAAGGGGCAACTCAGCAACCGCTGATTTACGGGCCGAACATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACG < SRR3722120.863217/148‑1 (MQ=60)
TATCAGGGCTTTGTGAAAGGGGCAACTCAGCAACCGCTGATTTACGGGCCGAACATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTG > SRR3722120.149098/1‑150 (MQ=60)
TATCAGGGCTTTGTGAAAGGGGCAACTCAGCAACCGCTGATTTACGGGCCGAACATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTG > SRR3722120.498857/1‑150 (MQ=60)
acgagattcgccttagtctcgtgggctcggagatgtgtataagagacagCATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTC < SRR3722120.818532/101‑1 (MQ=60)
GCTTTGTGAAAGGGGCAACTCAGCAACCGCTGATTTACGGGCCGAACATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCACCGACGAACTGATTCCTTC > SRR3722120.369582/1‑151 (MQ=60)
tttttttcaagcagaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagCTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCACCGACGAACTGATTCCTTCCGGT < SRR3722120.763479/77‑1 (MQ=60)
GAAAGGGGCAACTCAGCAACCGCTGATTTACGGGCCGAACATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGA > SRR3722120.613551/1‑150 (MQ=60)
AGGGGCAACTCAGCAACCGCTGATTTACGGGCCGAACATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACC > SRR3722120.76061/1‑151 (MQ=60)
GGGCAACTCAGCAACCGCTGATTTACGGGCCGAACATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACCTC > SRR3722120.531179/1‑151 (MQ=60)
CAGCAACCGCTGATTTACGGGCCGAACATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGTTTCCTTCCGGTGAAACCTCTTCTTATC < SRR3722120.126588/151‑1 (MQ=60)
aaagcgtcgagagtatctattttttttttttcaagcagaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagCCACCACCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATC < SRR3722120.242980/54‑1 (MQ=60)
AACATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGTCTGGCGG < SRR3722120.833709/151‑1 (MQ=60)
CATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGTCTGGCGG > SRR3722120.566270/1‑149 (MQ=60)
CATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCACCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGTCTGGCGG > SRR3722120.648057/1‑149 (MQ=60)
AGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGTCTGGCGGAGTTTACC < SRR3722120.56824/151‑1 (MQ=60)
GAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCtgtctcttatacacatctccgagcccacgagactaaggcga > SRR3722120.554022/1‑109 (MQ=60)
CCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGTCTGGCGGAGTTTACCCTGTCTCGCCGCGATCCCGGTTATGTTAGCAGAAGTAA > SRR3722120.249701/1‑150 (MQ=60)
GAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGTCTGGCGGAGTTTACCCTGTCTCGCCGCGATCCCGGTTATGTTAGCAGAAGTAAAGCG < SRR3722120.570540/151‑1 (MQ=60)
GAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGTCTGGCGGAGTTTACCCTGTCTCGCCGCGATCCCGGTTATGTTAGCAGAAGTAAAGCG < SRR3722120.24292/151‑1 (MQ=60)
CGAAGATCCTCGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGTCTGGCGGAGTTTACCCTGTCTCGCCGCGATCCCGGTTATGTTAGCAGAAGTAAAGCGACTGCTGAG < SRR3722120.373293/149‑1 (MQ=60)
CGACGAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGTCTGGCGGAGTTTACCCTGTCTCGCCGCGATCCCGGTTATGTTAGCAGAAGTAAAGCGACTGCTGAGCTGGAAAATCAG < SRR3722120.750160/151‑1 (MQ=60)
GAAGTGACCACCCCCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGTCTGGCGGAGTTTACCCTGTCTCtgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccgtcttct > SRR3722120.866874/1‑91 (MQ=60)
CCCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGTCTGGCGGAGTTTACCCTGTCTCGCCGCGATCCCGGTTATGTTAGCAGAAGTAAAGCGctgtctcttatacacatctccgagcccacgagacta > SRR3722120.621201/1‑114 (MQ=60)
|
CGTGTTTATCAGGGCTTTGTGAAAGGGGCAACTCAGCAACCGCTGATTTACGGGCCGAACATTAAAGACTGGCCGGAATTGGGTGCGCTGACTGACAATATCGTCCTGAAAGTGTGCTCGAAGATCCTCGACGAAGTGACCACCACCGACGAACTGATTCCTTCCGGTGAAACCTCTTCTTATCGTTCAAATCCGATTGGTCTGGCGGAGTTTACCCTGTCTCGCCGCGATCCCGGTTATGTTAGCAGAAGTAAAGCGACTGCTGAGCTGGAAAATCAGCGTCTGGCGGGGAAT > NZ_CP009273/800468‑800761
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
