Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F5 I97 R1 275 44.0 1733530 96.5% 1672856 122.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GAAGTTGGCGGTACGGTACGTATCGTTATCAACAACCAGGTTGGTTTCACCACCTCTAATCCGCTGGATGCCCGTTCTACGCCGTACTGTACTGATATCGGTAAGATGGTTCAGGCCCCGATTTTCCACGTTAACGCGGACGATCCGGAAGCCGTTGCCTTTGTGACCCGTCTGGCGCTCGATTTCCGTAACACCTTTAAACGTGATGTCTTCATCGACCTGGTGTGCTACCGCCGTCACGGCCACAACGAAGCCGACGAGCCGAGCGCAACCCAGCCGCTGATGTATCAGAA  >  NZ_CP009273/755296‑755588
                                                                                                                                              |                                                                                                                                                      
cgtgcgctcggagatgtttttttttgtcaagcagaagacggcatacgatattcgccttagtctcgtgggctcggagatgtgtataagagacagGATATCGGTAAGATGGTTCAGGCCCCGATTTTCCACGTTAACGCGGACGGTCCGGAAG                                                                                                                                                <  SRR3722120.281918/58‑1 (MQ=60)
  tttttcaagcagaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagGTTCTACGCCGTACTGTACTGATATCGGTAAGATGGTTCAGGCCCCGATTTTCCACGTTAACGCGGACGATCCGGAAGC                                                                                                                                               <  SRR3722120.827250/79‑1 (MQ=60)
          GTACGGTACGTATCGTTATCAACAACCAGGTTGGTTTCACCACCTCTAATCCGCTGGATGCCCGTTCTACGCCGTACTGTACTGATATCGGTAAGATGGTTCAGGCCCCGATTTTCCACGTTAACGCGGACGATCCGGAAGCCGTTGCCTT                                                                                                                                      >  SRR3722120.319831/1‑151 (MQ=60)
               GTACGTATCGTTATCAACAACCAGGTTGGTTTCACCACCTCTAATCCGCTGGATGCCCGTTCTACGCCGTACTGTACTGATATCGGTAAGATGGTTCAGGCCCCGATTTTCCACGTTAACGCGGACGGTCCGGAAGCCGTTGCCTTTGTG                                                                                                                                  >  SRR3722120.717211/1‑150 (MQ=60)
                        GTTATCAACAACCAGGTTGGTTTCACCACCTCTAATCCGCTGGATGCCCGTTCTACGCCGTACTGTACTGATATCGGTAAGATGGTTCAGGCCCCGATTTTCCACGTTAACGCGGACGGTCCGGAAGCCGTTGCCTTTGTGACCCGTCTGG                                                                                                                        >  SRR3722120.324982/1‑151 (MQ=60)
                                      GGTTGGTTTCACCACCTCTAATCCGCTGGATGCCCGTTCTACGCCGTACTGTACTGATATCGGTAAGATGGTTCAGGCCCCGATTTTCCACGTTAACGCGGACGGTCCGGAAGCCGTTGCCTTTGTGACCCGTCTGGCGCTCGATTTCCGT                                                                                                          >  SRR3722120.577941/1‑151 (MQ=60)
                                      GGTTGGTTTCACCACCTCTAATCCGCTGGATGCCCGTTCTACGCCGTACTGTACTGATATCGGTAAGATGGTTCAGGCCCCGATTTTCCACGTTAACGCGGACGGTCCGGAAGCCGTTGCCTTTGTGACCCGTCTGGCGCTCGATTTCCGT                                                                                                          >  SRR3722120.308777/1‑151 (MQ=60)
                                               CACCACCTCTAATCCGCTGGATGCCCGTTCTACGCCGTACTGTACTGATATCGGTAAGATGGTTCAGGCCCCGATTTTCCACGTTAACGCGGACGGTCCGGAAGCCGTTGCCTTTGTGACCCGTCTGGCGCTCGATTTCCGTAACACCTTT                                                                                                 >  SRR3722120.580346/1‑151 (MQ=60)
                                                   ACCTCTAATCCGCTGGATGCCCGTTCTACGCCGTACTGTACTGATATCGGTAAGATGGTTCAGGCCCCGATTTTCCACGTTAACGCGGACGGTCCGGAAGCCGTTGCCTTTGTGACCCGTCTGGCGCTCGATTTCCGTAACACCTTTAAAC                                                                                             <  SRR3722120.820730/151‑1 (MQ=60)
                                                                    TGCCCGTTCTACGCCGTACTGTACTGATATCGGTAAGATGGTTCAGGCCCCGATTTTCCACGTTAACGCGGACGGTCCGGAAGCCGTTGCCTTTGTGACCCGTCTGGCGCTCGATTTCCGTAACACCTTTAAACGTGATGTCTTCATCGAC                                                                            >  SRR3722120.205709/1‑151 (MQ=60)
                                                                          TTCTACGCCGTACTGTACTGATATCGGTAAGATGGTTCAGGCCCCGATTTTCCACGTTAACGCGGACGGTCCGGAAGCCGTTGCCTTTGTGACCCGTCTGGCGCTCGATTTCCGTAACACCTTTAAACGTGATGTCTTCATCGACCTGGTG                                                                      >  SRR3722120.855843/1‑151 (MQ=60)
                                                                                cagGTACTGTACTGATATCGGTAAGATGGTTCAGGCCCCGATTTTCCACGTTAACGCGGACGATCCGGAAGCCGTTGCCTTTGTGACCCGTCTGGCGCTCGATTTCCGTAACACCTTTAAACGTGATGTCTTCATCGACCTGGTGTGCTAC                                                                <  SRR3722120.568631/148‑1 (MQ=60)
                                                                                   GTACTGTACTGATATCGGTAAGATGGTTCAGGCCCCGATTTTCCACGTTAACGCGGACGGTCCGGAAGCCGTTGCCTTTGTGACCCGTCTGGCGCTCGATTTCCGTAACACCTTTAAACGTGATGTCTTCATCGACCTGGTGTGCTACCGC                                                             >  SRR3722120.277944/1‑151 (MQ=60)
                                                                                   GTACTGTACTGATATCGGTAAGATGGTTCAGGCCCCGATTTTCCACGTTAACGCGGACGATCCGGAAGCCGTTGCCTTTGTGACCCGTCTGGCGCTCGATTTCCGTAACACCTTTAAACGTGATGTCTTCATCctgtctcttatacacatc                                                             >  SRR3722120.288627/1‑133 (MQ=60)
                                                                                   GTACTGTACTGATATCGGTAAGATGGTTCAGGCCCCGATTTTCCACGTTAACGCGGACGATCCGGAAGCCGTTGCCTTTGTGACCCGTCTGGCGCTCGATTTCCGTAACACCTTTAAACGTGATGTCTTCATCGACCTGGTGTGCTACCGC                                                             >  SRR3722120.367319/1‑151 (MQ=60)
                                                                                   GTACTGTACTGATATCGGTAAGACGGTTCAGGCCCCGATTTTCCACGTTAACGCGGACGGTCCGGAAGCCGTTGCCTTTGTGACCCGTCTGGCGCTCGATTTCCGTAACACCTTTAAACGTGATGTCTTCATCGACCTGGTGTGCTACCGC                                                             >  SRR3722120.602193/1‑151 (MQ=60)
                                                                                        GTACTGATATCGGTAAGATGGTTCAGGCCCCGATTTTCCACGTTAACGCGGACGGTCCGGAAGCCGTTGCCTTTGTGACtgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccgtcttctgcttgaaaaaa                                                         >  SRR3722120.23321/1‑79 (MQ=60)
                                                                                        GTACTGATATCGGTAAGATGGTTCAGGCCCCGATTTTCCACGTTAACGCGGACGGTCCGGAAGCCGTTGCCTTTGTGACCCGTCTGGCGCTCGATTTCCGTAACACCTgtctcttatacacatctccgagcccacgagactaaggcgaatc                                                        >  SRR3722120.378038/1‑108 (MQ=60)
                                                                                        GTACTGATATCGGTAAGATGGTTCAGGCCCCGATTTTCCACGTTAACGCGGACGATCCGGAAGCCGTTGCCTTTGTGACCCGTCTGGCGCTCGATTTCCGTAACACCTTTAAACGTGATGTCTTCATCGACCTGGTGTGCTACCGCCGTC                                                         >  SRR3722120.689572/1‑150 (MQ=60)
                                                                                        GTACTGATATCGGTAAGATGGTTCAGGCCCCGATTTTCCACGTTAACGCGGACGATCCGGAAGCCGTTGCCTTTGTGACCCGTCTGGCGCTCGATTTCCGTAACACCTTTAAACGTGATGTCTTCATCGACCTGGTGTGCTACCGCCGTC                                                         >  SRR3722120.43366/1‑150 (MQ=60)
                                                                                          ACTGATATCGGTAAGATGGTTCAGGCCCCGATTTTCCACGTTAACGCGGACGATCCGGAAGCCGTTGCCTTTGTGACCCGTCTGGCGCTCGATTTCCGTAACACCTTTAAACGTGATGTCTTCATCGACCTGGTGTGCTACCGCCGTCACG                                                      >  SRR3722120.432535/1‑151 (MQ=60)
                                                                                                            GTTCAGGCCCCGATTTTCCACGTTAACGCGGACGGTCCGGAAGCCGTTGCCTTTGTGACCCGTCTGGCGCTCGATTTCCGTAACACCTTTAAACGTGATGTCTTCATCGACCTGGTGTGCTACCGCCGTCACGGCCACAACGAAGCCGACG                                    >  SRR3722120.648492/1‑151 (MQ=60)
                                                                                                            GTTCAGGCCCCGATTTTCCACGTTAACGCGGACGGTCCGGAAGCCGTTGCCTTTGTGACCCGTCTGGCGCTCGATTTCCGTAACACCTTTAAACGTGATGTCTTCATCGACCTGGTGTGCTACCGCCGTCACGGCCACAACGAAGCCGACG                                    >  SRR3722120.167288/1‑151 (MQ=60)
                                                                                                                            TCCACGTTAACGCGGACGGTCCGGAAGCCGTTGCCTTTGTGACCCGTCTGGCGCTCGATTTCCGTAACACCTTTAAACGTGATGTCTTCATCGACCTGGTGTGCTACCGCCGTCACGGCCACAACGAAGCCGACGAGCCGAGCGCAACCC                     <  SRR3722120.228015/150‑1 (MQ=60)
                                                                                                                                CGTTAACGCGGACGGTCCGGAAGCCGTTGCCTTTGTGACCCGTCTGGCGCTCGATTTCCGTAACACCTTTAAACGTGATGTCTTCATCGACCTGGTGTGCTACCGCCGTCACGGCCACAACGAAGCCGACGAGCCGAGCGCAACCCAGCCG                <  SRR3722120.642936/151‑1 (MQ=60)
                                                                                                                                              GTCCGGAAGCCGTTGCCTTTGTGACCCGTCTGGCGCTCGATTTCCGTAACACCTTTAAACGTGATGTCTTCATCGACCTGGTGTGCTACCGCCGTCACGGCCACAACctgtctcttatacacatctccgagcccacgagactaaggcgaat  >  SRR3722120.545661/1‑107 (MQ=60)
                                                                                                                                              GTCCGGAAGCCGTTGCCTTTGTGACCCGTCTGGCGCTCGATTTCCGTAACACCTTTAAACGTGATGTCTTCATCGACCTGGTGTGCTACCGCCGTCACGGCCACAACGAAGCCGACGAGCCGAGCGCAACCCAGCCGCTGATGTATCAGA   >  SRR3722120.557551/1‑150 (MQ=60)
                                                                                                                                              GTCCGGAAGCCGTTGCCTTTGTGACCCGTCTGGCGCTCGATTTCCGTAACACCTTTAAACGTGATGTCTTCATCGACCTGGTGTGCTACCGCCGTCACGGCCACAACGAAGCCGACGAGCCGAGCGCAACCCAGCCGCTGATGTATCAGA   >  SRR3722120.178741/1‑150 (MQ=60)
                                                                                                                                              |                                                                                                                                                      
GAAGTTGGCGGTACGGTACGTATCGTTATCAACAACCAGGTTGGTTTCACCACCTCTAATCCGCTGGATGCCCGTTCTACGCCGTACTGTACTGATATCGGTAAGATGGTTCAGGCCCCGATTTTCCACGTTAACGCGGACGATCCGGAAGCCGTTGCCTTTGTGACCCGTCTGGCGCTCGATTTCCGTAACACCTTTAAACGTGATGTCTTCATCGACCTGGTGTGCTACCGCCGTCACGGCCACAACGAAGCCGACGAGCCGAGCGCAACCCAGCCGCTGATGTATCAGAA  >  NZ_CP009273/755296‑755588

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑