Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F5 I179 R1
|
182 |
40.3 |
1547118 |
96.8% |
1497610 |
120.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
583,595 |
A→G |
V939A (GTC→GCC) |
nfrA ← |
bacteriophage adsorption protein NfrA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 583,595 | 0 | A | G | 95.5%
| 140.7
/ ‑0.8
| 44 | V939A (GTC→GCC) | nfrA | bacteriophage adsorption protein NfrA |
| Reads supporting (aligned to +/- strand): ref base A (2/0); new base G (23/19); total (25/19) |
| Fisher's exact test for biased strand distribution p-value = 4.98e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.66e-01 |
AGAAACGCGTTGTTGCGCTCTCCGTTACGTTGATTAATCGCCTTAAAGGTATGTTGATACTCGACGCCGAGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGACTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCTCAATAGTCTGTCCGTTAGCTACCTTCTGATGCCAGCTGACGCGATAATCTGCCGTCCACGCCTG > NZ_CP009273/583460‑583728
|
agaAACGCGTTGTTGCGCTCTCCGTTACGTTGATTAATCGCCTTAAAGGTATGTTGATACTCGACGCCGAGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTc > 1:563521/1‑139 (MQ=255)
gttgttGCGCTCTCCGTTACGTTGATTAATCGCCTTAAAGGTATGTTGATACTCGACGCCGAGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGc > 2:684568/1‑139 (MQ=255)
tACGTTGATTAATCGCCTTAAAGGTATGTTGATACTCGACGCCGAGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGcc > 2:510429/1‑139 (MQ=255)
gTTGATTAATCGCCTTAAAGGTATGTTGATACTCGACGCCGAGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCttt < 1:337962/139‑1 (MQ=255)
aTTAATCGCCTTAAAGGTATGTTGATACTCGACGCCGAGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAg < 1:530049/128‑1 (MQ=255)
aTTAATCGCCTTAAAGGTATGTTGATACTCGACGCCGAGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAg > 2:530049/1‑128 (MQ=255)
aTTAATCGCCTTAAAGGTATGTTGATACTCGACGCCGAGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCa > 2:527160/1‑139 (MQ=255)
cTTAAAGGTATGTTGATACTCGACGCCGAGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCg < 2:649839/139‑1 (MQ=255)
ttAAAGGTATGTTGATACTCGACGCCGAGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTAt > 1:341089/1‑127 (MQ=255)
ttAAAGGTATGTTGATACTCGACGCCGAGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTAt < 2:341089/127‑1 (MQ=255)
tGTTGATACTCGACGCCGAGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGa < 1:50026/108‑1 (MQ=255)
tGTTGATACTCGACGCCGAGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGa > 2:50026/1‑108 (MQ=255)
tGTTGATACTCGACGCCGAGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGAt > 2:591188/1‑124 (MQ=255)
tGTTGATACTCGACGCCGAGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGAt < 1:591188/124‑1 (MQ=255)
tGTTGATACTCGACGCCGAGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGaa > 2:576455/1‑139 (MQ=255)
tGTTGATACTCGACGCCGAGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGaa > 2:230271/1‑139 (MQ=255)
tGTTGATACTCGACGCCGAGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGACTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGaa > 2:11754/1‑139 (MQ=255)
gACGCCGAGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTa < 1:510429/138‑1 (MQ=255)
aCGCCGAGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAg > 1:544982/1‑139 (MQ=255)
cGCCGAGACTGACTTTGGGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCCCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGCAAgg > 2:497742/1‑139 (MQ=255)
ctTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATACTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCTCAATAGTCTg < 2:544982/139‑1 (MQ=255)
gtgCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCTCAATAGTCTGTCCg > 1:634659/1‑139 (MQ=255)
gCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGACTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCTCAATAGTCTGTCCGTTAGc > 2:269625/1‑139 (MQ=255)
gCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCTCAATAGTCTGTCCGTTAGCTACCt > 2:156055/1‑139 (MQ=255)
gtAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCTCAATAGTCTGTCCGTTAGCTACCTTCTGa > 1:339804/1‑139 (MQ=255)
gCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCg < 1:79767/80‑1 (MQ=255)
gCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCg > 2:79767/1‑80 (MQ=255)
cGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCTCAATAGTCTGTCCGTTAGCTACCTTCTGATGCCAg > 1:217072/1‑139 (MQ=255)
tctcGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCg > 2:139910/1‑77 (MQ=255)
tctcGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCg < 1:139910/77‑1 (MQ=255)
tctcGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCTCAATAGTCTGTCCGTTAGCTACCTTCTGATGCCAGCt > 2:493381/1‑139 (MQ=255)
tctcGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCTCAATAGTCTGTCCGTTAGCTACCTTCTGATGCCAGCt < 1:527160/139‑1 (MQ=255)
ctcGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGt > 1:765761/1‑89 (MQ=255)
ctcGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGt < 2:765761/89‑1 (MQ=255)
gCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCTCAATAGTCTGTCCGTTAGCTACCTTCTGATGCCAGCTGAcg < 1:684568/139‑1 (MQ=255)
gCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCTCAATAGTCTGTCCGTTAGCTACCTTCTGATGCCAGCTGAcg < 2:560305/139‑1 (MQ=255)
gCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCTCAATAGTCTGTCCGTTAGCTACCTTCTGATGCCAGCTGAcg < 1:450996/139‑1 (MQ=255)
gCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGACAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCTCAATAGTCTGTCCGTTAGCTACCTTCTGATGCCAGCTGa < 1:657835/137‑1 (MQ=255)
cAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCTCAATAGTCTGTCCGTTAGCTACCTTCTGATGCCAGCTGACGCGATAATCTGCCGTc < 2:353134/138‑1 (MQ=255)
cAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCTCAATAGTCTGTCCGTTAGCTACCTTCTGATGCCAGCTGACGCGATAATCTGCCGTc < 1:558349/138‑1 (MQ=255)
cGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTa < 2:511092/74‑1 (MQ=255)
cGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTa > 1:511092/1‑74 (MQ=255)
cccGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCTCAATAGTCTGTCCGTTAGCTACCTTCTGATGCCAGCTGACGCGATAATCTGCCGTCCACGCCTg > 2:350058/1‑138 (MQ=255)
cccGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCTCAATAGTCTGTCCGTTAGCTACCTTCTGATGCCAGCTGACGCGATAATCTGCCGTCCACGCCTg > 1:555906/1‑138 (MQ=255)
|
AGAAACGCGTTGTTGCGCTCTCCGTTACGTTGATTAATCGCCTTAAAGGTATGTTGATACTCGACGCCGAGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGACTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCTCAATAGTCTGTCCGTTAGCTACCTTCTGATGCCAGCTGACGCGATAATCTGCCGTCCACGCCTG > NZ_CP009273/583460‑583728
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTCCAATGGTGAGAAACGCGTTGTTGCGCTCTCCGTTACGTTGATTAATCGCCTTAAAGGTATGTTGATACTCGACGCCGAGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGACTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCTCAATAGTCTGTCCGTTAGCTACCTTCTGATGCCAGCTGACGCGATAATCTGCCGTCCACGCCTGAAT > NZ_CP009273/583449‑583731
|
CTCCAATGGTGAGAAACGCGTTGTTGCGCTCTCCGTTACGTTGATTAATCGCCTTAAAGGTATGTTGATACTCGACGCCGAGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCC > SRR3722133.571004/1‑151 (MQ=60)
ggagatgtgtataagagacaGCCTTAAAGGTATGTTGATACTCGACGCCGAGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATC < SRR3722133.50654/131‑1 (MQ=60)
GCCGTTACGTTGATTAATCGCCTTAAAGGTATGTTGATACTCGACGCCGAGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCA < SRR3722133.537145/151‑1 (MQ=60)
CGTTGATTAATCGCCTTAAAGGTATGTTGATACTCGACGCCGAGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGC < SRR3722133.342717/151‑1 (MQ=60)
GATTAATCGCCTTAAAGGTATGTTGATACTCGACGCCGAGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGCT > SRR3722133.345875/1‑151 (MQ=60)
gacaGCCTTAAAGGTATGTTGATACTCGACGCCGAGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCC < SRR3722133.598997/147‑1 (MQ=60)
catacgagatctagtacggtctcgtgggctcggagatgtgtataagagacagGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAAC < SRR3722133.141760/99‑1 (MQ=60)
acgagatctagtacggtctcgtgggctcggagatgtgtataagagacagGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAAC < SRR3722133.80776/102‑1 (MQ=60)
GTTGATACTCGACGCCGAGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGG > SRR3722133.552239/1‑151 (MQ=60)
CGACGCCGAGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCTCAATAG < SRR3722133.517301/150‑1 (MQ=60)
AGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCTCAATAGTCTGTCCGT > SRR3722133.642978/1‑151 (MQ=60)
GGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCTCAATAGTCTGTCCGTTAGCTACCTTCTGAT > SRR3722133.344574/1‑151 (MQ=60)
GCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCTCAATAGTCTGTCCGTTAGCTACCTTCTGATGCCAGC > SRR3722133.219999/1‑151 (MQ=60)
TCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCctgtctcttatacacatctccgagcccacgagaccgtact > SRR3722133.775657/1‑111 (MQ=60)
GTCTCGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCTCAATAGTCTGTCCGTTAGCTACCTTCTGATGCCAGCTGACGCGATAAT < SRR3722133.534237/151‑1 (MQ=60)
CGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCTCAATAGTCTGTCCGTTAGCTACCTTCTGATGCCAGCTGACGCGATAATCTGC < SRR3722133.457125/151‑1 (MQ=60)
CGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCTCAATAGTCTGTCCGTTAGCTACCTTCTGATGCCAGCTGACGCGATAATCTGC < SRR3722133.693426/151‑1 (MQ=60)
CGCCGGTCCAGATATTCCAGCGGACCCCGGCTCCGACAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCTCAATAGTCTGTCCGTTAGCTACCTTCTGATGCCAGCTGACGCGATAATCT < SRR3722133.666399/149‑1 (MQ=60)
AGATATTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCTCAATAGctgtctcttatacacatctccgagcccacgagaccgtactagatctcgtatgccg > SRR3722133.517976/1‑96 (MQ=60)
TTCCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCTCAATAGTCTGTCCGTTAGCTACCTTCTGATGCCAGCTGACGCGATAATCTGCCGTCCACGCCTGA > SRR3722133.563322/1‑150 (MQ=60)
CCAGCGGACCCCGGCTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCTCAATAGTCTGTCCGTTAGCTACCTTCTGATGCCAGCTGACGCGATAATCTGCCGTCCACGCCTGAAT < SRR3722133.565783/150‑1 (MQ=60)
|
CTCCAATGGTGAGAAACGCGTTGTTGCGCTCTCCGTTACGTTGATTAATCGCCTTAAAGGTATGTTGATACTCGACGCCGAGACTGACTTTGTGCGGCCAGGCGTCGTAGTGCGTCTCGCCGGTCCAGATATTCCAGCGGACCCCGACTCCGCCAAGCTGCGCGCCCTGAGTGCCTTTATCACGATAGCCGTTGTCCTGAACGTGAGCGTAAGGCTCAATAGTCTGTCCGTTAGCTACCTTCTGATGCCAGCTGACGCGATAATCTGCCGTCCACGCCTGAAT > NZ_CP009273/583449‑583731
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
