Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F5 I175 R1
|
328 |
64.7 |
2582366 |
96.2% |
2484236 |
120.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
585,704 |
T→A |
D236V (GAT→GTT) |
nfrA ← |
bacteriophage adsorption protein NfrA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 585,704 | 0 | T | A | 100.0%
| 214.5
/ NA
| 53 | D236V (GAT→GTT) | nfrA | bacteriophage adsorption protein NfrA |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (26/27); total (26/27) |
TGGCTTATTTTCAATGAGATAATGCTGGAGGCGTGCTTTTTCGCCACGATAAGCCAGCGCGGTCGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGATCGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTATCTGCCTGGGACCATTGTTTCAGGTAGATTGCCCGT > NZ_CP009273/585577‑585832
|
tGGCTTATTTTCAATGAGATAATGCTGGAGGCGTGCTTTTTCGCCACGATAAGCCAGCGCGGTCGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGc > 2:865274/1‑139 (MQ=255)
cTTATTTTCAATGAGATAATGCTGGAGGCGTGCTTTTTCGCCACGATAAGCCAGCGCGGTCGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCg > 1:540594/1‑139 (MQ=255)
ttttCAATGAGATAATGCTGGAGGCGTGCTTTTTCGCCACGATAAGCCAGCGCGGTCGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGc > 1:1275511/1‑137 (MQ=255)
aaTGAGATAATGCTGGAGGCGTGCTTTTTCGCCACGATAAGCCAGCGCGGTCGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCaagaag < 1:865274/138‑1 (MQ=255)
aaTGAGATAATGCTGGAGGCGTGCTTTTTCGCCACGATAAGCCAGCGCGGTCGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCaagaag < 1:525237/138‑1 (MQ=255)
gAGGCGTGCTTTTTCGCCACGATAAGCCAGCGCGGTCGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGc < 2:1082595/112‑1 (MQ=255)
gAGGCGTGCTTTTTCGCCACGATAAGCCAGCGCGGTCGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGc > 1:1082595/1‑112 (MQ=255)
gAGGCGTGCTTTTTCGCCACGATAAGCCAGCGCGGTCGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCTAACCACTGa > 2:24407/1‑139 (MQ=255)
tGCTTTTTCGCCACGATAAGCCAGCGCGGTCGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGt > 2:1111431/1‑139 (MQ=255)
ttCGCCACGATAAGCCAGCGCGGTCGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGc < 2:540594/138‑1 (MQ=255)
cGATAAGCCAGCGCGGTCGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCtt > 1:5452/1‑138 (MQ=255)
aTAAGCCAGCGCGGTTGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAAt < 2:586047/139‑1 (MQ=255)
cgcgGTCGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCaagaag < 2:936749/93‑1 (MQ=255)
cgcgGTCGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCaagaag > 1:936749/1‑93 (MQ=255)
tCGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGa < 1:834666/104‑1 (MQ=255)
tCGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGa > 2:834666/1‑104 (MQ=255)
tCGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCg < 1:482240/139‑1 (MQ=255)
gcgTAAGTAATATATGACTGATGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTg < 2:612420/139‑1 (MQ=255)
gcgTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTg < 1:428880/139‑1 (MQ=255)
gtaagtaaTATATGACTGAGGATCGGTGAAGATCCGCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCt < 2:199692/139‑1 (MQ=255)
gtaagtaaTATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCt < 2:357292/139‑1 (MQ=255)
taagtaaTATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCtt > 1:520839/1‑139 (MQ=255)
atatatGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGt < 2:395916/139‑1 (MQ=255)
aCTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCg > 1:191512/1‑138 (MQ=255)
tGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCt < 2:1283365/123‑1 (MQ=255)
tGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCt > 1:1283365/1‑123 (MQ=255)
aGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCt < 2:557042/121‑1 (MQ=255)
aGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCt < 1:1041556/121‑1 (MQ=255)
aGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCt > 2:1041556/1‑121 (MQ=255)
aGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCt > 1:557042/1‑121 (MQ=255)
aGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTAt < 2:894312/137‑1 (MQ=255)
aGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTAt < 2:1275511/137‑1 (MQ=255)
aGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTAt < 1:36988/137‑1 (MQ=255)
aGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTAt < 1:441987/137‑1 (MQ=255)
aGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTAt < 1:601352/137‑1 (MQ=255)
aGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTATCt > 1:973921/1‑139 (MQ=255)
aGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCAAGCTGCCCGGCAAGAAGCACGTCAAACAACTGACGGCGTTCTGCCGCGCTTATTGTGTTCTGCGGCCGTGCTTCTTTGTTTAGCGAATCt > 1:683028/1‑139 (MQ=255)
gATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTATCTGc > 1:436744/1‑139 (MQ=255)
aTCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTATCTGcc < 2:973921/139‑1 (MQ=255)
cGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCt < 1:735486/116‑1 (MQ=255)
cGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCt > 2:735486/1‑116 (MQ=255)
cGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTATCTGCCTg > 2:272487/1‑139 (MQ=255)
gTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGc > 2:7805/1‑86 (MQ=255)
gTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGc < 1:7805/86‑1 (MQ=255)
gTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTATCTGCCTgg > 2:622273/1‑138 (MQ=255)
ccccTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGtata > 2:323278/1‑116 (MQ=255)
ccccTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGtata < 1:323278/116‑1 (MQ=255)
gtgATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTATCTGCCTGGGACCATTGTTTCAg > 2:61214/1‑139 (MQ=255)
ccAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTATCTGCCTGGGACCATTGTTTCAGGTAGATTGCCCg > 1:685396/1‑139 (MQ=255)
ccAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTATCTGCCTGGGACCATTGTTTCAGGTAGATTGCCCg < 1:855867/139‑1 (MQ=255)
ccAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTATCTGCCTGGGACCATTGTTTCAGGTAGATTGCCCg > 1:1039792/1‑139 (MQ=255)
ccAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTATCTGCCTGGGACCATTGTTTCAGGTAGATTGCCCg > 1:950138/1‑139 (MQ=255)
cAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTATCTGCCTGGGACCATTGTTTCAGGTAGATTGCCCGt < 1:622273/139‑1 (MQ=255)
|
TGGCTTATTTTCAATGAGATAATGCTGGAGGCGTGCTTTTTCGCCACGATAAGCCAGCGCGGTCGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGATCGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTATCTGCCTGGGACCATTGTTTCAGGTAGATTGCCCGT > NZ_CP009273/585577‑585832
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCGTCCGTGGTAAATAGTGGCTTATTTTCAATGAGATAATGCTGGAGGCGTGCTTTTTCGCCACGATAAGCCAGCGCGGTCGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGATCGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTATCTGCCTGGGACCATTGTTTCAGGTAGATTGCCCGTTGCAGCAGATCG > NZ_CP009273/585560‑585844
|
GCGTCCGTGGTAAATAGTGGCTTATTTTCAATGAGATAATGCTGGAGGCGTGCTTTTTCGCCACGATAAGCCAGCGCGGTCGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCC < SRR3722129.730196/150‑1 (MQ=60)
GTAAATAGTGGCTTATTTTCAATGAGATAATGCTGGAGGCGTGCTTTTTCGCCACGATAAGCCAGCGCGGTCGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGG > SRR3722129.548509/1‑151 (MQ=60)
ATAGTGGCTTATTTTCAATGAGATAATGCTGGAGGCGTGCTTTTTCGCCACGATAAGCCAGCGCGGTCGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCA > SRR3722129.1293222/1‑149 (MQ=60)
CAATGAGATAATGCTGGAGGCGTGCTTTTTCGCCACGATAAGCCAGCGCGGTCGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACC < SRR3722129.877601/150‑1 (MQ=60)
CAATGAGATAATGCTGGAGGCGTGCTTTTTCGCCACGATAAGCCAGCGCGGTCGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACC < SRR3722129.532910/150‑1 (MQ=60)
AGATAATGCTGGAGGCGTGCTTTTTCGCCACGATAAGCCAGCGCGGTCGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCtgtctcttatacacat > SRR3722129.1097756/1‑135 (MQ=60)
gctcggagatgtgtataagagacagAGCCAGCGCGGTCGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGC < SRR3722129.846654/126‑1 (MQ=60)
CTTTTTCGCCACGATAAGCCAGCGCGGTCGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTA > SRR3722129.5522/1‑150 (MQ=60)
tcgccttagtctcgtgggctcggagatgtgtataagagacaGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATG < SRR3722129.7907/109‑1 (MQ=60)
CGATAAGCCAGCGCGGTCGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCctgtctcttatacacatctccgagcccacgagact > SRR3722129.950032/1‑115 (MQ=60)
CGATAAGACAGCGCGGTCGCGTAAGTAATATATGACTGAGGATAGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCTCGGCAAGACGCACGTCAAACCACTGACGGCGTTATGCCGCGCTTAgtgctgtctttt > SRR3722129.361592/1‑139 (MQ=60)
GCGCGGTCGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTC > SRR3722129.528447/1‑151 (MQ=60)
GTCGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGT < SRR3722129.489219/151‑1 (MQ=60)
CGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTAT < SRR3722129.435113/151‑1 (MQ=60)
gtataagagacagTGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAG < SRR3722129.746261/138‑1 (MQ=60)
agagacagATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAG < SRR3722129.1056190/143‑1 (MQ=60)
AGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGT > SRR3722129.194193/1‑150 (MQ=60)
TAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCtgtct > SRR3722129.1301158/1‑146 (MQ=60)
ATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCtgtctct > SRR3722129.565324/1‑144 (MQ=60)
ATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTATCTG > SRR3722129.987702/1‑151 (MQ=60)
ATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCAAGCTGCCCGGCAAGAAGCACGTCAAACAACTGACGGCGTTCTGCCGCGCTTATTGTGTTCTGCGGCCGTGCTTCTTTGTTTAGCGAATCTC > SRR3722129.693110/1‑151 (MQ=60)
gtataagagacagTCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTATCTGCC < SRR3722129.327945/138‑1 (MQ=60)
ATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTATCTGCC > SRR3722129.443080/1‑151 (MQ=60)
GAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTATCTGCCTGGGAC < SRR3722129.37443/149‑1 (MQ=60)
GAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTATCTGCCTGGGAC < SRR3722129.610321/149‑1 (MQ=60)
GAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTATCTGCCTGGGAC < SRR3722129.448395/149‑1 (MQ=60)
TCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCctgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccgtcttctgcttgaaaaaaaagactaaggaggggagcggttgccg > SRR3722129.93249/1‑53 (MQ=60)
TGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTATCTGCCTGGGACCATTGTTTCAGGTAGATTGCCCGT > SRR3722129.695506/1‑151 (MQ=60)
TGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTATCTGCCTGGGACCATTGTTTCAGGTAGATTGCCCGT > SRR3722129.1054410/1‑151 (MQ=60)
TGATTGCAGTGCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTATCTGCCTGGGACCATTGTTTCAGGTAGATTGCCCGT > SRR3722129.963569/1‑151 (MQ=60)
GCCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTATCTGCCTGGGACCATTGTTTCAGGTAGATTGCCCGTTGCAGCAGAT < SRR3722129.868082/151‑1 (MQ=60)
CCAGGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTATCTGCCTGGGACCATTGTTTCAGGTAGATTGCCCGTTGCAGCAGATC < SRR3722129.631522/151‑1 (MQ=60)
GGATCCGAACGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTATCTGCCTGGGACCtgtctcttatacacatctccgagcccacgagacta > SRR3722129.901165/1‑114 (MQ=60)
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GCGTCCGTGGTAAATAGTGGCTTATTTTCAATGAGATAATGCTGGAGGCGTGCTTTTTCGCCACGATAAGCCAGCGCGGTCGCGTAAGTAATATATGACTGAGGATCGGTGAAGATCCCCTGTGATTGCAGTGCCAGGATCCGATCGTCCAGCTGCCCGGCAAGAAGCACGTCAAACCACTGACGGCGTTCTGCCGCGCTTAATGTGTTCTGCTGGCGTGCTTCATTGTATAGCGTATCTGCCTGGGACCATTGTTTCAGGTAGATTGCCCGTTGCAGCAGATCG > NZ_CP009273/585560‑585844
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
