Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F5 I179 R1
|
182 |
40.3 |
1547118 |
96.8% |
1497610 |
120.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
4,565,565 |
G→A |
pseudogene (1830/2937 nt) |
BW25113_RS22615 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 4,565,565 | 0 | G | A | 100.0%
| 155.3
/ NA
| 40 | pseudogene (1830/2937 nt) | BW25113_RS22615 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (22/18); total (22/18) |
CGAAAGAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTGGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGACTGGGTCAGCCATGATC > NZ_CP009273/4565432‑4565686
|
cGAAAGAGCATATGACTTTTTCTTTAATCACGGATGACTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTGTAAAGGCTTAACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAgcgc > 2:291924/1‑138 (MQ=255)
agCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGa < 1:45656/139‑1 (MQ=255)
ccTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCTGAAAGTCACAATGcc > 2:759144/1‑139 (MQ=255)
gATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGaa < 1:263624/139‑1 (MQ=255)
gCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTg > 1:489650/1‑139 (MQ=255)
gCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACGTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCt < 2:328142/138‑1 (MQ=255)
gCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCCTATCTGCCTACCCATATTTAGTTCGAGCATCTTATCCTAGCGCAATATGACACTTTTGTCGCGTAGAAAGACACAATGCCGGAAATCTg > 2:202978/1‑139 (MQ=255)
cccGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCt > 2:335529/1‑137 (MQ=255)
cccGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCt < 1:335529/137‑1 (MQ=255)
tAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCt > 1:533389/1‑139 (MQ=255)
ccAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGa > 2:3552/1‑139 (MQ=255)
ccAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGa < 1:3552/139‑1 (MQ=255)
aaaTCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGtt < 1:459223/138‑1 (MQ=255)
aaaTCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGtt < 2:636377/138‑1 (MQ=255)
aaaTCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGtt < 2:141338/138‑1 (MQ=255)
tCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTca > 2:266979/1‑137 (MQ=255)
tGGATACGGCTTTTAAAGGCTTAACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAgg > 1:148449/1‑138 (MQ=255)
gATACGGCTTTTAAAGGCTTAACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAgg > 2:171190/1‑136 (MQ=255)
ttATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCa > 2:700059/1‑139 (MQ=255)
ttATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCa > 2:141237/1‑139 (MQ=255)
aTCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCAc < 1:141237/138‑1 (MQ=255)
tGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGa > 1:664061/1‑139 (MQ=255)
ccTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCTGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGAc < 1:759144/138‑1 (MQ=255)
ccTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGAc < 2:329695/138‑1 (MQ=255)
ccTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGACt > 2:320537/1‑139 (MQ=255)
cccATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGACTGGGt < 1:383918/139‑1 (MQ=255)
cccATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGACTGGGt < 1:305105/139‑1 (MQ=255)
atatTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGACTGGGTCAg < 2:148449/139‑1 (MQ=255)
tttCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGACTGGGTCAGcc < 2:489650/138‑1 (MQ=255)
ttcgAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCa < 1:761245/117‑1 (MQ=255)
ttcgAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCa > 2:761245/1‑117 (MQ=255)
ttcgAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGACTGGGt > 2:442130/1‑128 (MQ=255)
ttcgAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGACTGGGt < 1:442130/128‑1 (MQ=255)
ttcgAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGACTGGGTCAGCCATGATc > 2:102880/1‑139 (MQ=255)
ttcgAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGACTGGGTCAGCCATGATc > 1:110216/1‑139 (MQ=255)
ttcgAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGACTGGGTCAGCCATGATc > 1:561470/1‑139 (MQ=255)
ttcgAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGACTGGGTCAGCCATGATc > 1:437915/1‑139 (MQ=255)
ttcgAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTAACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGACTGGGTCAGCCATGATc > 1:431775/1‑139 (MQ=255)
aGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGa < 2:125545/42‑1 (MQ=255)
aGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGa > 1:125545/1‑42 (MQ=255)
|
CGAAAGAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTGGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGACTGGGTCAGCCATGATC > NZ_CP009273/4565432‑4565686
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TTACCGAAAGAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTGGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGACTGGGTCAGCCATGATCCGCTGATCGCACAATTGCGG > NZ_CP009273/4565428‑4565706
|
TTACCGAAAGAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGAC < SRR3722133.44799/150‑1 (MQ=60)
GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCG < SRR3722133.46229/151‑1 (MQ=60)
TGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATctgtctcttatacacatctccgagcccacgagaccgtact > SRR3722133.722087/1‑109 (MQ=60)
TGCCTGGATTGGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGG > SRR3722133.496246/1‑151 (MQ=60)
GGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCT < SRR3722133.267220/151‑1 (MQ=60)
GATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTG > SRR3722133.540529/1‑151 (MQ=60)
TGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGAT < SRR3722133.340253/150‑1 (MQ=60)
ACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGG < SRR3722133.3605/151‑1 (MQ=60)
CAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGA > SRR3722133.150398/1‑150 (MQ=60)
AAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGAC < SRR3722133.465470/150‑1 (MQ=60)
AACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGAC > SRR3722133.672719/1‑151 (MQ=60)
ataagagacagCCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGACTGGGT < SRR3722133.771089/139‑1 (MQ=60)
TATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGACTGGGTC < SRR3722133.143096/150‑1 (MQ=60)
GCCTACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCTGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGACTGGGTCAGCCA < SRR3722133.768962/150‑1 (MQ=60)
GCCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGACTGGGTCAGCCATGATC < SRR3722133.448155/151‑1 (MQ=60)
ACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGACTGGGTTAGCCATGATC < SRR3722133.309292/151‑1 (MQ=60)
ACCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGACTGGGTCAGCCATGATC < SRR3722133.389276/151‑1 (MQ=60)
CCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGACTGGGTCAGCCATGATCC > SRR3722133.443885/1‑151 (MQ=60)
CCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGACTGGGTCAGCCATGATCC > SRR3722133.568935/1‑151 (MQ=60)
CCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGACTGGGTCAGCCATGATCC > SRR3722133.111700/1‑151 (MQ=60)
CCCATATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTAACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGACTGGGTCAGCCATGATCC > SRR3722133.437686/1‑151 (MQ=60)
TATTTCGTTCGAGCATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCtgtctcttatacacatctccgagcccacgagaccgtactagatatcgtatgccgtcttctgcttgaaaaaaaaaaaacaacaaccc > SRR3722133.127200/1‑65 (MQ=60)
ATCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGACTGGGTCAGCCATGATCCGCTGATCGCACAATTGCG > SRR3722133.154255/1‑151 (MQ=60)
TCTTACCCTAGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGACTGGGTCAGCCATGATCCGCTGATCGCACAATTGCGG > SRR3722133.657166/1‑151 (MQ=60)
|
TTACCGAAAGAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATCTGCCTACCCATATTTCGTTCGAGCATCTTACCCTGGCGCAATATGACACTTTTGTCGCGCAGAAAGTCACAATGCCGGAAATCTGGAAGCTGGATCGTTCACAGGAAGACTACGCAGAGGGTCTGGCAAAAGCACGCGACTGGGTCAGCCATGATCCGCTGATCGCACAATTGCGG > NZ_CP009273/4565428‑4565706
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
