Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F5 I102 R1
|
278 |
39.1 |
2251254 |
95.8% |
2156701 |
87.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
506,540 |
T→C |
D99G (GAC→GGC) |
copA ← |
copper‑exporting P‑type ATPase CopA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 506,540 | 0 | T | C | 100.0%
| 111.2
/ NA
| 32 | D99G (GAC→GGC) | copA | copper‑exporting P‑type ATPase CopA |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (18/14); total (18/14) |
ACGCCCGGTACGCTTTGCAGCGCATTTTGTACGCGGGTGACACAGCTGGCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTGTCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAACCGCTGTCAGTGCTTCCGACGGGATTGATGACTCCGCCAGCGGTTT > NZ_CP009273/506456‑506625
|
aCGCCCGGTACGCTTTGCAGCGCATTTTGTACGCGGGTGACACAGCTGGCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTgccatcgt > 2:809147/1‑91 (MQ=255)
gCCCGGTACGCTTTGCAGCGCATTTTGTACGCGGGTGACACAGCTGGCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTgccatcgtca > 1:891150/1‑91 (MQ=255)
cGCTTTGCAGCGCATTTTGTACGCGGGTGACACAGCTGGCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGt > 1:136005/1‑91 (MQ=255)
cTTTGCAGCGCATTTTGTACGCGGGTGACACAGCTGGCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCg < 1:1062296/91‑1 (MQ=255)
cTTTGCAGCGCATTTTGTACGCGGGTGACACAGCTGGCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCg > 2:1018763/1‑91 (MQ=255)
cAGCGCATTTTGTACGCGGGTGACACAGCTGGCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCg < 1:281547/86‑1 (MQ=255)
cAGCGCATTTTGTACGCGGGTGACACAGCTGGCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCg > 2:281547/1‑86 (MQ=255)
cAGCGCATTTTGTACGCGGGTGACACAGCTGGCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCGCTGcc > 2:226739/1‑91 (MQ=255)
gcgcATTTTGTACGCGGGTGACACAGCTGGCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCgg > 2:1045630/1‑91 (MQ=255)
ttttGTACGCGGGTGACACAGCTGGCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAgcg < 1:201663/91‑1 (MQ=255)
ttGTACGCGGGTGACACAGCTGGCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAGCGcc < 2:946370/91‑1 (MQ=255)
ttGTACGCGGGTGACACAGCTGGCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAGCGcc > 2:790389/1‑91 (MQ=255)
gggTGACACAGCTGGCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAAc > 2:577168/1‑91 (MQ=255)
gggTGACACAGCTGGCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAAc > 1:177110/1‑91 (MQ=255)
gggTAACACAGCTGGCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAAc > 1:905806/1‑91 (MQ=255)
cTGGCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGaa > 2:13771/1‑67 (MQ=255)
cTGGCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGaa < 1:13771/67‑1 (MQ=255)
ggCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGACACTGCCGGAATCGCCTCAGAAACCGCTGCCAGTGCt > 2:770968/1‑91 (MQ=255)
gcgcAGCTCATGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAACCGCTGTCAGTGCtt < 1:735500/91‑1 (MQ=255)
gCTCATGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAACCGCTGTCAGTGCTTCCGAc < 1:343145/91‑1 (MQ=255)
gCTCATGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAACCGCTGTCAGTGCTTCCGAc < 2:454438/91‑1 (MQ=255)
tCATGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAACCGCTGTCAGTGCTTCCGACgg < 2:195412/91‑1 (MQ=255)
tCATGCCGCTCAGCAGCAACGGCGGGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAACCGCTGTCAGTGCTTCCGACgg < 2:194966/91‑1 (MQ=255)
aTGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAACCGCTGTCAGTGCTTCCGACGGGa > 2:986609/1‑91 (MQ=255)
cTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAACCGCTGTCAGTGCTTCCGACGGGATtgatg > 2:410634/1‑91 (MQ=255)
cTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAACCGCTGTCAGTGCTTCCGACGGGATtgatg > 2:686420/1‑91 (MQ=255)
cTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAACCGCTGTCAGTGCTTCCGACGGGATtgatg > 1:676542/1‑91 (MQ=255)
cTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAAACCCCGTCAGTGCTTCCGACGGGATtgatg > 2:864871/1‑91 (MQ=255)
aaCTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAACCGCTGTCAGTGCTTCCGACGGGATTGATGACTCCGCCa > 2:898252/1‑91 (MQ=255)
aCTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAACCGCTGTCAGTGCTTCCGACGGGATTGATGACTCCGCCAg < 1:436465/91‑1 (MQ=255)
aCTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAACCGCTGTCAGTGCTTCCGACGGGATTGATGACTCCGCCAg < 1:410634/91‑1 (MQ=255)
ctggctgCCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAACCGCTGTCAGTGCTTCCGACGGGATTGATGACTCCGCCAGCGGt > 2:566362/1‑91 (MQ=255)
ggctgCCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAACCGCTGTCAGTGCTTCCGACGGGATTGATGACTCCGCCAGCGGttt < 1:636725/91‑1 (MQ=255)
ggctgCCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAACCGCTGTCAGTGCTTCCGACGGGATTGATGACTCCGCCAGCGGttt < 2:981821/91‑1 (MQ=255)
|
ACGCCCGGTACGCTTTGCAGCGCATTTTGTACGCGGGTGACACAGCTGGCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTGTCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAACCGCTGTCAGTGCTTCCGACGGGATTGATGACTCCGCCAGCGGTTT > NZ_CP009273/506456‑506625
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACCCGTGCCTGAGTGACGCCCGGTACGCTTTGCAGCGCATTTTGTACGCGGGTGACACAGCTGGCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTGTCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAACCGCTGTCAGTGCTTCCGACGGGATTGATGACTCCGCCAGCGGTTTAGCCTTTGGG > NZ_CP009273/506441‑506635
|
ACCCGTGCCTGAGTGACGCCCGGTACGCTTTGCAGCGCATTTTGTACGCGGGTGACACAGCTGGCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTGCC > SRR3722125.1060636/1‑101 (MQ=60)
CCTGAGTGACGCCCGGTACGCTTTGCAGCGCATTTTGTACGCGGGTGACACAGCTGGCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCA > SRR3722125.910863/1‑101 (MQ=60)
ACGCCCGGTACGCTTTGCAGCGCATTTTGTACGCGGGTGACACAGCTGGCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGT > SRR3722125.138591/1‑101 (MQ=60)
CTTTGCAGCGCATTTTGTACGCGGGTGACACAGCTGGCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAG < SRR3722125.1086215/101‑1 (MQ=60)
CTTTGCAGCGCATTTTGTACGCGGGTGACACAGCTGGCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAG < SRR3722125.287262/101‑1 (MQ=60)
tgtataagagacaGGGTGACACAGCTGGCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGA < SRR3722125.14035/88‑1 (MQ=60)
TTTTGTACGCGGGTGACACAGCTGGCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAAC > SRR3722125.180552/1‑101 (MQ=60)
TTTTGTACGCGGGTGACACAGCTGGCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAAC < SRR3722125.205643/101‑1 (MQ=60)
TTTTGTACGCGGGTAACACAGCTGGCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAAC > SRR3722125.925880/1‑101 (MQ=60)
GCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAACCGCTGTCAGTGCTTCCGACGGGAT < SRR3722125.751358/101‑1 (MQ=60)
GCTCATGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAACCGCTGTCAGTGCTTCCGACGGGATTGATG < SRR3722125.350277/101‑1 (MQ=60)
GCTCATGCCGCTCAGCAGCAACTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAACCGCTGTCAGTGCTTCCGACGGGATTGATG > SRR3722125.691120/1‑101 (MQ=60)
gtgtataagagacagAACTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAACCGCTGTCAGTGCTTCCGACGGGATTGATGACTC < SRR3722125.567873/86‑1 (MQ=60)
ACTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAACCGCTGTCAGTGCTTCCGACGGGATTGATGACTCCGCCAGCGGTTTAGCC < SRR3722125.419283/101‑1 (MQ=60)
ACTGCTGGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAACCGCTGTCAGTGCTTCCGACGGGATTGATGACTCCGCCAGCGGTTTAGCC < SRR3722125.445670/101‑1 (MQ=60)
GGCTGCCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAACCGCTGTCAGTGCTTCCGACGGGATTGATGACTCCGCCAGCGGTTTAGCCTTTGGG < SRR3722125.650454/101‑1 (MQ=60)
|
ACCCGTGCCTGAGTGACGCCCGGTACGCTTTGCAGCGCATTTTGTACGCGGGTGACACAGCTGGCGCAGCTCATGCCGCTCAGCAGCAACTGCTGGCTGTCATCGTCATCGGCGGTCGCTGCCGGAAGCGCCTCAGAAACCGCTGTCAGTGCTTCCGACGGGATTGATGACTCCGCCAGCGGTTTAGCCTTTGGG > NZ_CP009273/506441‑506635
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
