Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F5 I102 R1
|
278 |
39.1 |
2251254 |
95.8% |
2156701 |
87.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
1,026,705 |
A→C |
V57G (GTG→GGG) |
yccA ← |
FtsH protease modulator YccA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 1,026,705 | 0 | A | C | 100.0%
| 118.1
/ NA
| 32 | V57G (GTG→GGG) | yccA | FtsH protease modulator YccA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (18/14); total (18/14) |
CAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCACCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTC > NZ_CP009273/1026617‑1026791
|
cAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATAcccccc > 1:135045/1‑91 (MQ=255)
cAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATAcccccc > 1:736902/1‑91 (MQ=255)
aaCCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGt > 2:885888/1‑91 (MQ=255)
ccGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCa < 2:3349/91‑1 (MQ=255)
aaTGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCg > 1:586145/1‑91 (MQ=255)
gCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGgag > 1:938447/1‑91 (MQ=255)
aTAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGgca < 2:206614/91‑1 (MQ=255)
aTAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGgca < 2:583218/91‑1 (MQ=255)
aTCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGgcagca > 2:931481/1‑91 (MQ=255)
aTCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGgcagca > 1:245338/1‑91 (MQ=255)
ggTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGc > 1:458893/1‑91 (MQ=255)
gTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCa > 2:23523/1‑91 (MQ=255)
tCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCAc < 2:586145/91‑1 (MQ=255)
tCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCAc < 2:461966/91‑1 (MQ=255)
ttATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTAc < 1:135555/91‑1 (MQ=255)
ccGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGt < 1:475231/91‑1 (MQ=255)
ataGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTa < 1:460807/91‑1 (MQ=255)
ggAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGgca > 1:310997/1‑54 (MQ=255)
ggAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGgca < 2:310997/54‑1 (MQ=255)
aCATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGaaaa > 2:145825/1‑91 (MQ=255)
aTCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATgg < 2:945930/47‑1 (MQ=255)
aTCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATgg > 1:945930/1‑47 (MQ=255)
aTCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAgg > 1:606946/1‑91 (MQ=255)
aTCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAgg > 1:1071562/1‑91 (MQ=255)
tCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGc > 1:393203/1‑91 (MQ=255)
cAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGcc < 2:413839/91‑1 (MQ=255)
tacatacCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCa < 2:155252/91‑1 (MQ=255)
tacatacCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCa > 2:142388/1‑91 (MQ=255)
tacatacCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCa > 1:477072/1‑91 (MQ=255)
tacCCCCCAGCGTCAGAATCAGACCTGGAGATGGCAGCATCAGCAc > 2:337860/1‑46 (MQ=255)
tacCCCCCAGCGTCAGAATCAGACCTGGAGATGGCAGCATCAGCAc < 1:337860/46‑1 (MQ=255)
tacCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCt > 2:632825/1‑91 (MQ=255)
tacCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCt > 1:289271/1‑91 (MQ=255)
acCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTc < 2:785212/91‑1 (MQ=255)
|
CAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCACCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTC > NZ_CP009273/1026617‑1026791
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCACCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAA > NZ_CP009273/1026607‑1026800
|
GGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCC < SRR3722125.1021380/101‑1 (MQ=60)
GGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCC > SRR3722125.137610/1‑101 (MQ=60)
GGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCC < SRR3722125.158351/101‑1 (MQ=60)
GGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCC > SRR3722125.752796/1‑101 (MQ=60)
GGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCC < SRR3722125.563504/101‑1 (MQ=60)
GGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCG > SRR3722125.598736/1‑101 (MQ=60)
AAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAG > SRR3722125.959285/1‑101 (MQ=60)
TGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCA > SRR3722125.250267/1‑101 (MQ=60)
AGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGC > SRR3722125.468577/1‑101 (MQ=60)
agtctcgtgggctcggagatgtgtataagagacagAAACCATACATACCCCCCAGCGTCAGAATCAGACCTGGAGATGGCAGCATCAGCACCGTACTGGCA < SRR3722125.344887/66‑1 (MQ=60)
TTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGC < SRR3722125.138132/101‑1 (MQ=60)
CCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATC < SRR3722125.485250/101‑1 (MQ=60)
TTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCtgtctcttatacacatctccgagccc > SRR3722125.317394/1‑75 (MQ=60)
ATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAA < SRR3722125.470521/101‑1 (MQ=60)
GGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCctgtctcttatacacatctccgagcccacgagac > SRR3722125.966964/1‑67 (MQ=60)
GGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGG > SRR3722125.620016/1‑101 (MQ=60)
GGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGG > SRR3722125.1095703/1‑101 (MQ=60)
GTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGC > SRR3722125.401438/1‑101 (MQ=60)
CATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCA > SRR3722125.487138/1‑101 (MQ=60)
AAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCT > SRR3722125.295169/1‑101 (MQ=60)
CCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAG > SRR3722125.762398/1‑101 (MQ=60)
ATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCA > SRR3722125.26798/1‑101 (MQ=60)
TACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCctgtctcttatacacat > SRR3722125.840474/1‑84 (MQ=60)
TACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAG > SRR3722125.613294/1‑101 (MQ=60)
ACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGA > SRR3722125.85841/1‑101 (MQ=60)
TACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAA > SRR3722125.860017/1‑101 (MQ=60)
|
GGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCACCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAA > NZ_CP009273/1026607‑1026800
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
