Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F5 I184 R1
|
278 |
29.6 |
1166432 |
97.3% |
1134938 |
124.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
1,026,705 |
A→C |
V57G (GTG→GGG) |
yccA ← |
FtsH protease modulator YccA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 1,026,705 | 0 | A | C | 95.1%
| 136.2
/ 1.0
| 41 | coding (170/660 nt) | yccA | FtsH protease modulator YccA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base C (20/19); minor base . (1/1); total (21/20) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.52e-01 |
TCCGGCAGACAGATAGGTGTTCAGAATAGGTCCGAGGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCACCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGGTGCTAAGCAGTGAT > NZ_CP009273/1026572‑1026839
|
tCCGGCAGACAGATAGGTGTTCAGAATAGGTCCGAGGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGc > 1:394314/1‑139 (MQ=255)
ttCAGAATAGGTCCGAGGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCg > 1:9179/1‑136 (MQ=255)
ttCAGAATAGGTCCGAGGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCg > 1:558605/1‑136 (MQ=255)
aaTAGGTCCGAGGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGgc < 2:209267/139‑1 (MQ=255)
aaTAGGTCCGAGGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGgc < 2:31081/139‑1 (MQ=255)
gTCCGAGGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCAt > 1:133624/1‑139 (MQ=255)
aGGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCa > 1:321888/1‑139 (MQ=255)
aGGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCa < 2:283666/139‑1 (MQ=255)
ggATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCAc < 2:133624/139‑1 (MQ=255)
cAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCAt > 2:61076/1‑123 (MQ=255)
cAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCAt < 1:61076/123‑1 (MQ=255)
gAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCa < 2:62723/126‑1 (MQ=255)
gAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCa > 1:62723/1‑126 (MQ=255)
tGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAg > 2:454798/1‑139 (MQ=255)
tGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAg > 1:180814/1‑139 (MQ=255)
agaTAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGc > 1:156589/1‑136 (MQ=255)
agaTAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGc < 2:156589/136‑1 (MQ=255)
ggTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCt > 1:200977/1‑138 (MQ=255)
tCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCa > 1:139496/1‑126 (MQ=255)
tCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCAGCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCa < 2:139496/126‑1 (MQ=255)
tCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCC‑CCAGCGTCAGAATCAGACCCGGAGATGGCAGCAt > 1:32681/1‑84 (MQ=255)
tCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCC‑CCAGCGTCAGAATCAGACCCGGAGATGGCAGCAt < 2:32681/84‑1 (MQ=255)
ttCGCCGTTTTATAGGTCAGGGACATCAAACCATACATACCCCCCAGCGGCAGAATCAGACGCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAAt < 2:94767/139‑1 (MQ=255)
ttCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAAt < 2:383444/139‑1 (MQ=255)
ttCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAAt < 2:321888/139‑1 (MQ=255)
cGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTa < 2:200977/139‑1 (MQ=255)
gTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCa > 1:453027/1‑76 (MQ=255)
gTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCa < 2:453027/76‑1 (MQ=255)
tataGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACg > 1:140931/1‑139 (MQ=255)
gTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCgg > 1:259432/1‑50 (MQ=255)
gTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCgg < 2:259432/50‑1 (MQ=255)
cAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGGTCAGCAGAACATAGGTATTACGCAGCAcc > 2:100737/1‑139 (MQ=255)
aGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCt > 2:180759/1‑139 (MQ=255)
aaCATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTAt < 1:560280/139‑1 (MQ=255)
ccATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCA‑CTTATGGGTGCTAAg < 2:266207/139‑1 (MQ=255)
catacataCCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGGTGCTAAg < 2:78646/139‑1 (MQ=255)
tacatacCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGGTGCTAAg > 1:391318/1‑137 (MQ=255)
acatacCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTa < 2:310998/110‑1 (MQ=255)
acatacCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTa > 1:310998/1‑110 (MQ=255)
catacCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGGTGCTAAGCAg < 1:63942/138‑1 (MQ=255)
acCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGGTGCTAAGCAGTGAt > 1:244703/1‑139 (MQ=255)
ccccccAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGGTGCTAAGCAGTGAt < 2:391318/138‑1 (MQ=255)
|
TCCGGCAGACAGATAGGTGTTCAGAATAGGTCCGAGGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCACCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGGTGCTAAGCAGTGAT > NZ_CP009273/1026572‑1026839
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACGTCACCCATTCCGGCAGACAGATAGGTGTTCAGAATAGGTCCGAGGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCACCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGGTGCTAAGCAGTGATGTACGGTC > NZ_CP009273/1026561‑1026847
|
ACGTCACCCATTCCGGCAGACAGATAGGTGTTCAGAATAGGTCCGAGGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCG > SRR3722139.398998/1‑151 (MQ=60)
gggctcggagatgtgtataagagacagGAATAGGTCCGAGGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAA < SRR3722139.543991/123‑1 (MQ=60)
ACAGATAGGTGTTCAGAATAGGTCCGAGGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGG > SRR3722139.9269/1‑148 (MQ=60)
ACAGATAGGTGTTCAGAATAGGTCCGAGGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGG > SRR3722139.564999/1‑148 (MQ=60)
GTTCAGAATAGGTCCGAGGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATC > SRR3722139.135250/1‑151 (MQ=60)
GAATAGGTCCGAGGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCAC > SRR3722139.325857/1‑151 (MQ=60)
agacaGAGGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTAC < SRR3722139.61774/146‑1 (MQ=60)
GATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCActg > SRR3722139.63447/1‑148 (MQ=60)
GTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGG > SRR3722139.183055/1‑151 (MQ=60)
GGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGC > SRR3722139.158503/1‑151 (MQ=60)
GAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTC > SRR3722139.203454/1‑150 (MQ=60)
GATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCctg > SRR3722139.141179/1‑148 (MQ=60)
GATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCC‑CCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACctgtctcttatacacatctccgagcccacgagaccgtact > SRR3722139.33042/1‑106 (MQ=60)
GCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCActgtctcttatacacatctccgagcccacgagaccgtactagatctcgtatgc > SRR3722139.458325/1‑98 (MQ=60)
ATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGC > SRR3722139.142630/1‑151 (MQ=60)
CCGTTTTATAGGTCAGGAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCActgtctcttatacacatctccgagcccacgagaccgtactagatctcgtatgccgtcttctgcttgaaaaaaaaaaac > SRR3722139.262698/1‑72 (MQ=60)
GAACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGGTGCTAAGC < SRR3722139.566689/151‑1 (MQ=60)
ataagagacagATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGGTGCTAAGC < SRR3722139.559789/139‑1 (MQ=60)
ACATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGGTGCTAAGC > SRR3722139.395985/1‑149 (MQ=60)
ataagagacagACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGGTGCTAAGCAG < SRR3722139.131630/139‑1 (MQ=60)
CATCAAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTgtctcttatacacatct > SRR3722139.314851/1‑134 (MQ=60)
AAACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCCGCAGAAAATAGGTATTACGCAGCACCTTATGGGTGCTAAGCAGTGATG > SRR3722139.247750/1‑151 (MQ=60)
ACCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGGTGCTAAGCAGTGATGct > SRR3722139.329602/1‑149 (MQ=60)
CCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGGTGCTAAGCAGTGATGTAC > SRR3722139.477386/1‑151 (MQ=60)
CCATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGGATTACGCAGCACCTTATGGGTGCTAAGCAGTGATGTAC > SRR3722139.562973/1‑151 (MQ=60)
ATACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCctgtctcttatacacatctccgagccccgagaccgtactagatctcgtatgccgtc > SRR3722139.383709/1‑95 (MQ=60)
ACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGGTGCTAAGCAGTGATGTACGGTC > SRR3722139.125185/1‑151 (MQ=60)
ACATACCCCCCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGGTGCTAAGCAGTGATGTACGGT < SRR3722139.64712/150‑1 (MQ=60)
|
ACGTCACCCATTCCGGCAGACAGATAGGTGTTCAGAATAGGTCCGAGGATATAACCCAGAAAACCGGTAAAGGCGAATGCGGAGATAATCCCGGTCGGCTTATTCGCCGTTTTATAGGTCAGGAACATCAAACCATACATACCCACCAGCGTCAGAATCAGACCCGGAGATGGCAGCATCAGCACCGTACTGGCAGTTGCGGTAATCGCCGAAAAGGCCAGCGTCAGGCTCAGCAGAAAATAGGTATTACGCAGCACCTTATGGGTGCTAAGCAGTGATGTACGGTC > NZ_CP009273/1026561‑1026847
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
