Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F5 I184 R1
|
278 |
29.6 |
1166432 |
97.3% |
1134938 |
124.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
967,323 |
Δ1 bp |
coding (116/894 nt) |
ycbJ → |
YcbJ family phosphotransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 967,321 | 0 | A | . | 100.0%
| 181.6
/ NA
| 41 | coding (114/894 nt) | ycbJ | YcbJ family phosphotransferase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (20/21); total (20/21) |
GTAGCTTTTATGAGGGTAATCTGAATGGAACAGCTGCGTGCCGAATTAAGCCATTTACTGGGCGAAAAACTCAGTCGTATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGGAAACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGACTGTCCGTATGCCGACTATTTATGGTGTGATGACGCATGAAG > NZ_CP009273/967184‑967454
|
gTAGCTTTTATGAGGGTAATCTGAATGGAACAGCTGCGTGCCGAATTAAGCCATTTACTGGGCGAAAAACTCAGTCGTATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGGaa > 2:270639/1‑139 (MQ=255)
tCTGAATGGAACAGCTGCGTGCCGAATTAAGCCATTTACTGGGCGAAAAACTCAGTCGTATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTTGGCTTTGTATGACAGCCAGGG‑AACCCAATGCAGTTAATGGc > 2:368395/1‑138 (MQ=255)
aaTGGAACAGCTGCGTGCCGAATTAAGCCATTTACTGGGCGAAAAACTCAGTCGTATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTTTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCaag < 1:344475/137‑1 (MQ=255)
aaTGGAACAGCTGCGTGCCGAATTAAGCCATTTACTGGGCGAAAAACTCAGTCGTATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCaag < 2:581648/137‑1 (MQ=255)
aaCAGCTGCGTGCCGAATTAAGCCATTTACTGGGCGAAAAACTCAGTCGTATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCtt > 1:22330/1‑138 (MQ=255)
aaCAGCTGCGTGCCGAATTAAGCCATTTACTGGGCGAAAAACTCAGTCGTATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCtt > 2:70347/1‑138 (MQ=255)
cAGCTGCGTGCCGAATTAAGCCATTTACTGGGCGAAAAACTCAGTCGTATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAg > 2:470534/1‑139 (MQ=255)
aGCTGCGTGCCGAATTAAGCCATTTACTGGGCGAAAAACTCAGTCGTATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAg > 1:408716/1‑138 (MQ=255)
cTGCGTGCCGAATTAAGCCATTTACTGGGCGAAAAACTCAGTCGTATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTAc > 1:415702/1‑139 (MQ=255)
cTGCGTGCCGAATTAAGCCATTTACTGGGCGAAAAACTCAGTCGTATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTAc > 1:297306/1‑139 (MQ=255)
cGTGCCGAATTAAGCCATTTACTGGGCGAAAAACTCAGTCGTATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGcc > 1:412592/1‑139 (MQ=255)
tGCCGAATTAAGCCATTTACTGGGCGAAAAACTCAGTCGTATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGc > 2:313988/1‑136 (MQ=255)
tGCCGAATTAAGCCATTTACTGGGCGAAAAACTCAGTCGTATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGc < 1:313988/136‑1 (MQ=255)
cGAATTAAGCCATTTACTGGGCGAAAAACTCAGTCGTATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGa > 2:315849/1‑138 (MQ=255)
tttACTGGGCGAAAAACTCAGTCGTATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAAc > 2:230335/1‑139 (MQ=255)
ggCGAAAAACTCAGTCGTATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCAt < 2:22330/138‑1 (MQ=255)
ggCGAAAAACTCAGTCGTATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATg > 1:223916/1‑139 (MQ=255)
ttGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTa < 1:395560/73‑1 (MQ=255)
ttGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTa > 2:395560/1‑73 (MQ=255)
ttGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCa < 2:297306/139‑1 (MQ=255)
ttGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCa < 1:154404/139‑1 (MQ=255)
ttGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCa < 1:304882/139‑1 (MQ=255)
tGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCaagaag > 1:136695/1‑139 (MQ=255)
tGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCaagaag < 2:223916/139‑1 (MQ=255)
tCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTgg > 1:69574/1‑138 (MQ=255)
aaTGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGa < 1:470534/138‑1 (MQ=255)
aaTGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGAc < 1:70347/139‑1 (MQ=255)
aaTGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGAc > 1:107471/1‑139 (MQ=255)
aaTGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGAc < 1:230335/139‑1 (MQ=255)
aaTGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGAc < 2:8955/139‑1 (MQ=255)
aaaGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGACTGTCCg > 2:113722/1‑139 (MQ=255)
aTACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGACTGTCCGTATGCCg < 2:107471/139‑1 (MQ=255)
tACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGACTGTCCGTATGCCGa < 2:408716/139‑1 (MQ=255)
tACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGACTGTCCGTATGCCGa > 2:554762/1‑139 (MQ=255)
cGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGACTGTCCGTATGCCGAc < 1:554762/138‑1 (MQ=255)
ttGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGACTGTCCGTATGCCGACTATTTa < 2:139094/139‑1 (MQ=255)
tGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGACTGTCCGTATGCCGACTATTTATGGTGtgat < 1:270639/138‑1 (MQ=255)
tGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGACTGTCCGTATGCCGACTATTTATGGTGtgat > 1:13158/1‑138 (MQ=255)
tGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGACTGTCCGTATGCCGACTATTTATGGTGTGATGACGc < 2:69574/139‑1 (MQ=255)
ccAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGACTGTCCGTATGCCg > 2:267447/1‑111 (MQ=255)
ccAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGACTGTCCGTATGCCg < 1:267447/111‑1 (MQ=255)
ccAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGACTGTCCGTATGCCGACTATTTATGGTGTGATGACGCATgaag < 2:136695/139‑1 (MQ=255)
|
GTAGCTTTTATGAGGGTAATCTGAATGGAACAGCTGCGTGCCGAATTAAGCCATTTACTGGGCGAAAAACTCAGTCGTATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGGAAACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGACTGTCCGTATGCCGACTATTTATGGTGTGATGACGCATGAAG > NZ_CP009273/967184‑967454
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGGGTAATCTGAATGGAACAGCTGCGTGCCGAATTAAGCCATTTACTGGGCGAAAAACTCAGTCGTATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGGAAACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGACTGTCCGTATGCCGACTATTTATGGTGTGATGACGCATGAAGAACACCCCG > NZ_CP009273/967196‑967463
|
acggcatacgagatctagtacggtctcgtgggctcggagatgtgtataagagacagACTCAGTCGTATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAG < SRR3722139.400260/95‑1 (MQ=60)
AATCTGAATGGAACAGCTGCGTGCCGAATTAAGCCATTTACTGGGCGAAAAACTCAGTCGTATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTT > SRR3722139.22569/1‑150 (MQ=60)
CTGAATGGAACAGCTGCGTGCCGAATTAAGCCATTTACTGGGCGAAAAACTCAGTCGTATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGT > SRR3722139.413546/1‑150 (MQ=60)
GAATGGAACAGCTGCGTGCCGAATTAAGCCATTTACTGGGCGAAAAACTCAGTCGTATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTTTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTA < SRR3722139.348651/149‑1 (MQ=60)
GAATGGAACAGCTGCGTGCCGAATTAAGCCATTTACTGGGCGAAAAACTCAGTCGTATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACG > SRR3722139.420633/1‑151 (MQ=60)
GAATGGAACAGCTGCGTGCCGAATTAAGCCATTTACTGGGCGAAAAACTCAGTCGTATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACG > SRR3722139.301026/1‑151 (MQ=60)
gaagtttctgttgttttttttttttttttttcaagcagaagacggcatacgagatctagtacggtctcgtgggctcggagatgtgtataagagacagTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGC < SRR3722139.399935/54‑1 (MQ=60)
TGGAACAGCTGCGTGCCGAATTAAGCCATTTACTGGGCGAAAAACTCAGTCGTATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCC > SRR3722139.417497/1‑151 (MQ=60)
GCGTGCCGAATTAAGCCATTTACTGGGCGAAAAACTCAGTCGTATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCC < SRR3722139.317868/150‑1 (MQ=60)
GCCATTTACTGGGCGAAAAACTCAGTCGTATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGG > SRR3722139.226658/1‑151 (MQ=60)
GTCGTATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGT > SRR3722139.138343/1‑151 (MQ=60)
TATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGG > SRR3722139.70392/1‑150 (MQ=60)
ATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGAC < SRR3722139.156288/151‑1 (MQ=60)
ATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGAC < SRR3722139.308664/151‑1 (MQ=60)
TTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGACT > SRR3722139.108790/1‑151 (MQ=60)
CAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGACTGTCCGTATGC < SRR3722139.71173/151‑1 (MQ=60)
CAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGACTGTCCGTATGC < SRR3722139.233180/151‑1 (MQ=60)
CAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGACTGTCCGTATG < SRR3722139.476017/150‑1 (MQ=60)
gatgtgtataagagacagTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGACTGTCCGTATGCCGACTATTTATGG < SRR3722139.270851/133‑1 (MQ=60)
ACGGCGTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGACTGTCCGTATGCCGACTATTTATGGTG < SRR3722139.561133/150‑1 (MQ=60)
GTTGTGGGCTTTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGACTGTCCGTATGCCGACTATTTATGGTGTGATG > SRR3722139.13293/1‑150 (MQ=60)
TTGTATGACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGACTGTCCGTATGCCGACTATTTATGGTGTGATGACGCATGAAG < SRR3722139.274079/150‑1 (MQ=60)
ACAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGACTGTCCGTATGCCGACTATTTATGGTGTGATGACGCATGAAGAACACCCC < SRR3722139.278530/151‑1 (MQ=60)
CAGCCAGGG‑AACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGACTGTCCGTATGCCGACTATTTATGGTGTGATGACGCATGAAGAACACACCG > SRR3722139.15098/1‑151 (MQ=60)
|
AGGGTAATCTGAATGGAACAGCTGCGTGCCGAATTAAGCCATTTACTGGGCGAAAAACTCAGTCGTATTGAGTGCGTCAATGAAAAAGCGGATACGGCGTTGTGGGCTTTGTATGACAGCCAGGGAAACCCAATGCCGTTAATGGCAAGAAGCTTTAGTACGCCCGGAAAAGCCCGACAACTGGCATGGAAAACCACCATGCTGGCAAGAAGTGGGACTGTCCGTATGCCGACTATTTATGGTGTGATGACGCATGAAGAACACCCCG > NZ_CP009273/967196‑967463
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
