Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F5 I175 R1
|
328 |
64.7 |
2582366 |
96.2% |
2484236 |
120.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
443,081 |
C→T |
L27L (CTG→CTA) |
cyoE ← |
heme o synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 443,081 | 0 | C | T | 98.4%
| 231.2
/ ‑7.2
| 62 | L27L (CTG→CTA) | cyoE | heme o synthase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (31/30); minor base A (0/1); total (31/31) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01 |
GTCCTTTCCATCTTTCTGTCGATATCCCTGTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGCAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGCTCTTAGTGCATCATCATGTTGTAGTTGAGGTTCCA > NZ_CP009273/442950‑443205
|
gTCCTTTCCATCTTTCTGTCGATATCCCTGTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAAt < 1:922567/138‑1 (MQ=255)
ttCCATCTTTCTGTCGATATCCCTGTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATccccc > 1:416761/1‑138 (MQ=255)
ccATCTTTCTGTCGATATCCCTGTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCaa < 1:889673/138‑1 (MQ=255)
aTCTTTCTGTCGATATCCCTGTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCa < 2:16520/139‑1 (MQ=255)
tCTGTCGATATCCCTGTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCAcc > 2:1147370/1‑136 (MQ=255)
atatCCCTGTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGt > 1:1258088/1‑139 (MQ=255)
tGTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGt > 1:1083889/1‑132 (MQ=255)
tGTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGt < 2:1083889/132‑1 (MQ=255)
gATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAgatg < 1:120405/139‑1 (MQ=255)
gTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGatgatg > 2:510731/1‑139 (MQ=255)
ggtgttAAACACACACCACGACGCCACATCCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGAGAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCCATCAACGCGATCATGTTGCCAAAGATGATGCC‑t > 2:284321/3‑139 (MQ=255)
tgttAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑Tgg > 2:1021518/1‑139 (MQ=255)
tgttAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑Tgg > 1:494491/1‑139 (MQ=255)
aaaCACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTc > 2:183955/1‑139 (MQ=255)
acacaACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTa < 1:737598/139‑1 (MQ=255)
acaACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACt < 2:305593/139‑1 (MQ=255)
aaCCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTg > 2:338116/1‑139 (MQ=255)
aCCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGc < 2:494491/139‑1 (MQ=255)
gACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGtt > 2:805017/1‑129 (MQ=255)
gACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGtt < 1:805017/129‑1 (MQ=255)
gACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGt < 2:33386/139‑1 (MQ=255)
gACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGt < 2:927716/139‑1 (MQ=255)
gACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGt < 1:1147370/139‑1 (MQ=255)
gACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGt < 2:711804/139‑1 (MQ=255)
aCGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGTa > 1:124932/1‑139 (MQ=255)
aCGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGTa < 1:1185268/139‑1 (MQ=255)
cacaACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGTATTGc > 2:360471/1‑139 (MQ=255)
caACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGt > 1:1098799/1‑132 (MQ=255)
caACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGt < 2:1098799/132‑1 (MQ=255)
caACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGTa < 1:752455/133‑1 (MQ=255)
caACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGTa > 2:752455/1‑133 (MQ=255)
aaCCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGTATTGCTTa < 2:1174944/139‑1 (MQ=255)
aaCCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGTATTGCTTa < 1:238610/139‑1 (MQ=255)
aaCCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGTATTGCTTa < 1:518570/139‑1 (MQ=255)
aaCCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGTATTGCTTa < 2:805609/139‑1 (MQ=255)
ccAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGTATTGCTTaaa < 2:117811/139‑1 (MQ=255)
gTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGTATTGCTTAAAcat > 1:345031/1‑139 (MQ=255)
acCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAgatg > 2:1098454/1‑96 (MQ=255)
acCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAgatg < 1:1098454/96‑1 (MQ=255)
cGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGctct > 2:507329/1‑138 (MQ=255)
gtgtAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCcagc < 1:1039277/45‑1 (MQ=255)
gtgtAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCcagc > 2:1039277/1‑45 (MQ=255)
gtgtAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGctct > 1:627824/1‑137 (MQ=255)
gtgtAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGctct > 2:494319/1‑137 (MQ=255)
tAGAAAAAAAGGGATAAATCATGGCTGCCTTTT‑GAGCCAGGTAGGACCCCCCCAATCCCCGAGATCGGGTTGCAAAAGATGTTGCT‑TGTTTTCGTTCTTTGCAGTTTTTTTTTAAACATCATAACCGCCGCTCTTAGTg < 2:1258088/139‑1 (MQ=255)
ggggATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGc > 2:218039/1‑92 (MQ=255)
ggggATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGc < 1:218039/92‑1 (MQ=255)
ggggATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGCTCTTAGTGCATCATCAtg > 2:897346/1‑139 (MQ=255)
ggggATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGCTCTTAGTGCATCATCAtg > 1:466784/1‑139 (MQ=255)
ggggATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGCTCTTAGTGCATCATCAtg > 1:170162/1‑139 (MQ=255)
gggATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGCTCTTAGTGCATCATCAtgt > 2:783645/1‑139 (MQ=255)
gggATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGCTCTTAGTGCATCATCAtgt > 2:1105956/1‑139 (MQ=255)
gggAAAAACAATGCCTCCCTTTGGGGGCCAGAAGGAACCCCCAAACCACCGAAATCGGGTTCCAAAAGATG‑TGCCTTGTTTTCTTTCTTTGAAGTTTTTTTTAAAACATAATAACCGCCGCTCTTAGTGCATCATCAtg < 2:940469/139‑1 (MQ=255)
gATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGTa > 1:836773/1‑94 (MQ=255)
gATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGTa < 2:836773/94‑1 (MQ=255)
gATAATCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGCTCTTAGTGCATCATCAtgttg > 1:642243/1‑139 (MQ=255)
aaTCAATGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGCTCTTAGTGCATCATCATGTTGTAg > 1:619529/1‑139 (MQ=255)
catggctccCCTTG‑GAGGCCAGTAGGACCCCCCCAACCCCCGATATCAGGTGGCAAAAGATGATGCC‑TGTTTTCTTTCTTGGCAGTTTTTTCTTAAACATCATAACCGCCGCTCTTAGTGCATCATCATGTTGTAGTTg < 1:783645/135‑1 (MQ=255)
cAATGCTCCCTTTG‑GAGGCCAGTAGGAACCCCCCAATCCCCGAGATCGGGTTGCAAAAGATGATCCT‑TGTTTTCTTTTTTGGCGGGTTTTGCTAAAACAACATAACCGCCGCTCTTAGTGCATCATCATGTTGTAGTTg < 1:183955/139‑1 (MQ=255)
aTGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGTATTGCTTa > 2:386526/1‑93 (MQ=255)
aTGCTGCCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGTATTGCTTa < 1:386526/93‑1 (MQ=255)
ctgcCCTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCACCGCTCTTAGTGCATCATCATGTTGTAGTTGAGGt < 1:943265/138‑1 (MQ=255)
ctgcCCTTT‑GAGGCCAGTAGGAACCCCCCAACCCCCGAGATCAGTTTGCAAAAGATGATGCC‑TGTTTCCTTTACTTGCGGGTATTGTTAAAACATCATAACCGCCGCTCTTAGTGCATCATCATGTTGTAGTTGAGGt < 1:1137314/138‑1 (MQ=255)
cccTTT‑GAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGCTCTTAGTGCATCATCATGTTGTAGTTGAGGTTCca > 1:287134/1‑139 (MQ=255)
|
GTCCTTTCCATCTTTCTGTCGATATCCCTGTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTT‑GAGGCCAGCAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCC‑TGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGCTCTTAGTGCATCATCATGTTGTAGTTGAGGTTCCA > NZ_CP009273/442950‑443205
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCAGCACCCGATTCTTCGTCCTTTCCATCTTTCTGTCGATATCCCTGTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGCAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGCTCTTAGTGCATCATCATGTTGTAGTTGAGGTTCCACATAATCCAGATGGAGCCTACAA > NZ_CP009273/442933‑443228
|
CCAGCACCCGATTCTTCGTCCTTTCCATCTTTCTGTCGATATCCCTGTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGT > SRR3722129.309964/1‑149 (MQ=60)
GCACCCGATTCTTCGTCCTTTCCATCTTTCTGTCGATATCCCTGTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAA < SRR3722129.510220/151‑1 (MQ=60)
GCACCCGATTCTTCGTCCTTTCCATCTTTCTGTCGATATCCCTGTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAA < SRR3722129.1288579/151‑1 (MQ=60)
CCCGATTCTTCGTCCTTTCCATCTTTCTGTCGATATCCCTGTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCC < SRR3722129.1069426/151‑1 (MQ=60)
ttgttttttttttttttcaagcagaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagCCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGCAGGAATCCCCC < SRR3722129.1053891/67‑1 (MQ=60)
TTCTTCGTCCTTTCCATCTTTCTGTCGATATCCCTGTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCA > SRR3722129.422841/1‑150 (MQ=60)
CGTCCTTTCCATCTTTCTGTCGATATCCCTGTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCAC < SRR3722129.935686/150‑1 (MQ=60)
TCCATCTTTCTGTCGATATCCCTGTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATC < SRR3722129.902324/150‑1 (MQ=60)
TCTTTCTGTCGATATCCCTGTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTT > SRR3722129.1275583/1‑151 (MQ=60)
GTCGATATCCCTGTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAA > SRR3722129.1099064/1‑149 (MQ=60)
GTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGT > SRR3722129.501644/1‑151 (MQ=60)
CGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTT < SRR3722129.122051/151‑1 (MQ=60)
cgtgggctcggagatgtgtataagagacagCAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTT < SRR3722129.1113783/118‑1 (MQ=60)
tctttttttttttttcaagcagaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacaGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGG < SRR3722129.707579/69‑1 (MQ=60)
ACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTA < SRR3722129.816626/151‑1 (MQ=60)
CACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTAT > SRR3722129.126637/1‑151 (MQ=60)
CACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTAT < SRR3722129.748398/151‑1 (MQ=60)
tttttttttttcaagcagaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTAT < SRR3722129.479182/73‑1 (MQ=60)
tagtctcgtgggctcggagatgtgtataagagacagGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTT < SRR3722129.221077/114‑1 (MQ=60)
ACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTT > SRR3722129.1114132/1‑150 (MQ=60)
CGACGCCACAACCAGTGACACACCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAAC < SRR3722129.1163311/151‑1 (MQ=60)
GACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAACA < SRR3722129.1201757/151‑1 (MQ=60)
GACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAACA < SRR3722129.763428/151‑1 (MQ=60)
CGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAACATC > SRR3722129.350006/1‑151 (MQ=60)
CAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAAC < SRR3722129.526143/151‑1 (MQ=60)
CAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAAC < SRR3722129.242003/151‑1 (MQ=60)
agtctcgtgggctcggagatgtgtataagagacagGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAAC < SRR3722129.392176/115‑1 (MQ=60)
CCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGCTCTT > SRR3722129.637158/1‑149 (MQ=60)
GTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGCTCTTAGTGCATCATCATGT > SRR3722129.473574/1‑151 (MQ=60)
GTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGCTCTTAGTGCATCATCATGT > SRR3722129.172502/1‑151 (MQ=60)
GATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAACActgtctcttatacacatctccgagcccacgagact > SRR3722129.848783/1‑116 (MQ=60)
GATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGCTCTTAGTGCATCATCATGTTGT > SRR3722129.651822/1‑151 (MQ=60)
AAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGCTCTTAGTGCATCATCATGTTGTAGT > SRR3722129.628738/1‑151 (MQ=60)
AATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGCTCTTAGTGCATCATCATGTTGTAGTTGAGGTTCCAC > SRR3722129.291253/1‑151 (MQ=60)
acaatgctccctttgGAGGCCAGTAGGAACCCCCCAATCCCCGAGATCGGGTTGCAAAAGATGATCCTTGTTTTCTTTTTTGGCGGGTTTTGCTAAAACAACATAACCGCCGCTCTTAGTGCATCATCATGTTGTAGTTGAGGTTCCACAT < SRR3722129.186544/136‑1 (MQ=50)
GCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCACCGCTCTTAGTGCATCATCATGTTGTAGTTGAGGTTCCACATAATC < SRR3722129.956615/150‑1 (MQ=60)
GCTGCCCTTTGAGGCCAGTAGGAACCCCCCAACCCCCGAGATCAGTTTGCAAAAGATGATGCCTGTTTCCTTTACTTGCGGGTATTGTTAAAACATCATAACCGCCGCTCTTAGTGCATCATCATGTTGTAGTTGAGGTTCCACATAATC < SRR3722129.1153137/150‑1 (MQ=60)
CAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGCTCTTAGTGCATCATCtgtctcttatacacatctccgagcccacgagactaaggcgaat > SRR3722129.372683/1‑108 (MQ=60)
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CCAGCACCCGATTCTTCGTCCTTTCCATCTTTCTGTCGATATCCCTGTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGCAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGCTCTTAGTGCATCATCATGTTGTAGTTGAGGTTCCACATAATCCAGATGGAGCCTACAA > NZ_CP009273/442933‑443228
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
