Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F5 I175 R1
|
328 |
64.7 |
2582366 |
96.2% |
2484236 |
120.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
543,592 |
C→T |
T486I (ACC→ATC) |
fdrA → |
acyl‑CoA synthetase FdrA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 543,592 | 0 | C | T | 94.6%
| 193.1
/ 1.1
| 56 | T486I (ACC→ATC) | fdrA | acyl‑CoA synthetase FdrA |
| Reads supporting (aligned to +/- strand): ref base C (2/1); new base T (24/29); total (26/30) |
| Fisher's exact test for biased strand distribution p-value = 5.92e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.49e-01 |
CGCGTTTAGATAATCAACCACTGTATGCCATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCACCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGGAGCTACAAAGCGC > NZ_CP009273/543457‑543718
|
cgcgTTTAGATAATCAACCACTGTATGCCATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCtt > 1:60651/1‑139 (MQ=255)
cgcgTTTAGATAATCAACCACTGTATGCCATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCtt > 1:519700/1‑139 (MQ=255)
gATAATCAACCACTGTATGCCATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTggcg < 2:217481/138‑1 (MQ=255)
aTAATCAACCACTGTATGCCATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTggcggc < 2:956875/139‑1 (MQ=255)
aTAATCAACCACTGTATGCCATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTggcggc < 1:1277914/139‑1 (MQ=255)
tCAACCACTGTATGCCATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCg > 1:1072257/1‑139 (MQ=255)
tCAACCACTGTATGCCATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCg > 1:1051893/1‑139 (MQ=255)
tCAACCACTGTATGCCATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCg > 1:987764/1‑139 (MQ=255)
aCTGTATGCCATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAAtt > 2:1004025/1‑139 (MQ=255)
tATGCCATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTggcg < 2:131830/123‑1 (MQ=255)
tATGCCATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTggcg > 1:131830/1‑123 (MQ=255)
tATGCCATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATc > 1:590603/1‑139 (MQ=255)
tATGCCATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATc > 2:325996/1‑139 (MQ=255)
tATGCCATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATc > 2:682293/1‑139 (MQ=255)
tATGCCATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCACCTTGCTGGCGGCAGCGTTAATTCATc > 1:1154853/1‑139 (MQ=255)
cATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGctc < 2:82323/139‑1 (MQ=255)
cATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCACCTTGCTGGCGGCAGCGTTAATTCATCCGctc > 1:451540/1‑139 (MQ=255)
tGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCg > 1:1101765/1‑139 (MQ=255)
tGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCATGCTGGCGGCAGCGTTAATTCATCCGCTCTCg > 1:356541/1‑139 (MQ=255)
ccACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGcc < 2:590603/139‑1 (MQ=255)
ccACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGcc > 2:837762/1‑139 (MQ=255)
gTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCg < 2:1072257/139‑1 (MQ=255)
gTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCg < 2:519700/139‑1 (MQ=255)
aCAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGca < 2:990245/138‑1 (MQ=255)
aCAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGca < 2:356541/138‑1 (MQ=255)
cAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGcaca < 1:930505/139‑1 (MQ=255)
aGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAg > 2:110730/1‑139 (MQ=255)
aGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAg < 2:1242365/139‑1 (MQ=255)
ggCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGc < 1:1244313/139‑1 (MQ=255)
aaCGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCg < 2:402786/126‑1 (MQ=255)
aaCGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCg > 1:402786/1‑126 (MQ=255)
aaCGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAacaca < 2:1101765/138‑1 (MQ=255)
aaCGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAacaca < 2:638937/138‑1 (MQ=255)
aCCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCACCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGt < 2:451540/138‑1 (MQ=255)
cTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGa < 2:1113128/135‑1 (MQ=255)
cTCGCAGCAAATCGCCACGCTGGAAGATGCGGAGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGa > 1:1113128/1‑135 (MQ=255)
cagcaAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCg < 1:99920/139‑1 (MQ=255)
aTCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGa > 1:223228/1‑139 (MQ=255)
cGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCAt < 2:1058342/111‑1 (MQ=255)
cGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCAt > 1:1058342/1‑111 (MQ=255)
aTGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACg < 2:1173589/139‑1 (MQ=255)
aTGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACg < 1:110730/139‑1 (MQ=255)
aTGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACg < 1:30025/139‑1 (MQ=255)
gggATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCt < 1:837762/139‑1 (MQ=255)
tGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCAt > 2:317284/1‑55 (MQ=255)
tGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCAt < 1:317284/55‑1 (MQ=255)
cGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTgcgc < 1:682293/138‑1 (MQ=255)
cGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTgcgc < 2:313761/138‑1 (MQ=255)
gTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGca < 2:58436/69‑1 (MQ=255)
gTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGca > 1:58436/1‑69 (MQ=255)
tGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACg > 1:739270/1‑96 (MQ=255)
tGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACg < 2:739270/96‑1 (MQ=255)
ttCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGca < 1:1150112/61‑1 (MQ=255)
ttCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGca > 2:1150112/1‑61 (MQ=255)
gCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGGAGCTACAAAgc > 2:493951/1‑139 (MQ=255)
ccGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGGAGCTACAAAgcgc > 2:1091181/1‑137 (MQ=255)
|
CGCGTTTAGATAATCAACCACTGTATGCCATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCACCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGGAGCTACAAAGCGC > NZ_CP009273/543457‑543718
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGCCTGTGCCGCGCGTTTAGATAATCAACCACTGTATGCCATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCACCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGGAGCTACAAAGCGCCAGCAAACCGGTT > NZ_CP009273/543446‑543731
|
AGCCTGTGCCGCGCGTTTAGATAATCAACCACTGTATGCCATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTG > SRR3722129.61456/1‑151 (MQ=60)
AGCCTGTGCCGCGCGTTTAGATAATCAACCACTGTATGCCATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTG > SRR3722129.527292/1‑151 (MQ=60)
CGTTTAGATAATCAACCACTGTATGCCATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGT > SRR3722129.1066659/1‑151 (MQ=60)
CGTTTAGATAATCAACCACTGTATGCCATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGT > SRR3722129.1087286/1‑151 (MQ=60)
CGTTTAGATAATCAACCACTGTATGCCATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGT > SRR3722129.1001724/1‑151 (MQ=60)
GATAATCAACCACTGTATGCCATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTC < SRR3722129.1295658/151‑1 (MQ=60)
ATCAACCACTGTATGCCATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATctgtct > SRR3722129.133608/1‑145 (MQ=60)
ATCAACCACTGTATGCCATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCC > SRR3722129.599332/1‑151 (MQ=60)
ATCAACCACTGTATGCCATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCACCTTGCTGGCGGCAGCGTTAATTCATCC > SRR3722129.1170971/1‑151 (MQ=60)
CCACTGTATGCCATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCACCTTGCTGGCGGCAGCGTTAATTCATCCGCTCT > SRR3722129.458070/1‑151 (MQ=60)
CTGTATGCCATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGC > SRR3722129.1117128/1‑151 (MQ=60)
CTGTATGCCATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCATGCTGGCGGCAGCGTTAATTCATCCGCTCTCGC > SRR3722129.361688/1‑151 (MQ=60)
tttttttcaagcagaagacggcatacgagattcgccttagtctcgtgagctcggagatgtgtataagagacagGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCC < SRR3722129.321814/77‑1 (MQ=60)
tcaagcagaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACAC < SRR3722129.1166149/83‑1 (MQ=60)
GACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACctg > SRR3722129.408632/1‑148 (MQ=60)
ACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACAC < SRR3722129.943706/151‑1 (MQ=60)
aagcagaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACC < SRR3722129.922452/86‑1 (MQ=60)
AGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCG < SRR3722129.1261654/151‑1 (MQ=60)
CCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGAGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACG > SRR3722129.1128662/1‑151 (MQ=60)
GCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGAT > SRR3722129.226327/1‑151 (MQ=60)
GCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAAC < SRR3722129.101289/151‑1 (MQ=60)
GCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACctgtctcttatacacatc > SRR3722129.1073215/1‑133 (MQ=60)
GATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGC < SRR3722129.30400/151‑1 (MQ=60)
GATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGC < SRR3722129.112239/151‑1 (MQ=60)
CGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACctgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccgtcttc > SRR3722129.59205/1‑91 (MQ=60)
GGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGGAG < SRR3722129.849786/151‑1 (MQ=60)
GATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATctgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccgtcttctgcttgaaaaaaaaaaaaagacataaaatcagt > SRR3722129.382805/1‑54 (MQ=60)
GATTGCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTctgtctcttatacacatctccgagcccacg > SRR3722129.750089/1‑118 (MQ=60)
GCGGTCGTGAGTTCGCTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGGAGCTACAA < SRR3722129.692365/150‑1 (MQ=60)
CTACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCACTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGGAGCTACAAAGCGCCAGCAAACCGG > SRR3722129.1135048/1‑151 (MQ=60)
ACCGGAAGCCATCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGGAGCTACAAAGCGCCAGCAAACCGGTT > SRR3722129.1097212/1‑151 (MQ=60)
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AGCCTGTGCCGCGCGTTTAGATAATCAACCACTGTATGCCATTGCCACGGTGACAGGCACTGAACGTGACCCGCAATGCCGCTCGCAGCAAATCGCCACGCTGGAAGATGCGGGGATTGCGGTCGTGAGTTCGCTACCGGAAGCCACCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGGAGCTACAAAGCGCCAGCAAACCGGTT > NZ_CP009273/543446‑543731
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
