Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F5 I175 R1
|
328 |
64.7 |
2582366 |
96.2% |
2484236 |
120.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
599,729 |
C→T |
A131T (GCA→ACA) |
ybdG ← |
mechanosensitive ion channel YbdG |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 599,729 | 0 | C | T | 89.3%
| 176.1
/ 9.1
| 56 | A131T (GCA→ACA) | ybdG | mechanosensitive ion channel YbdG |
| Reads supporting (aligned to +/- strand): ref base C (3/3); new base T (20/30); total (23/33) |
| Fisher's exact test for biased strand distribution p-value = 6.81e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.62e-01 |
ACCAAGACCGCTGATCAGAATCGCTGGCGACTGACCAATCAGCAGCGAGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGCCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCGCAGGTAGTCAGAATATCTGCCGCTTCGGTGCCTTTTTGCAGCCAGAATAC > NZ_CP009273/599601‑599864
|
aCCAAGACCGCTGATCAGAATCGCTGGCGACTGACCAATCAGCAGCGAGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTc > 1:1089285/1‑139 (MQ=255)
aaGACCGCTGATCAGAATCGCTGGCGACTGACCAATCAGCAGCGAGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTgc > 2:303146/1‑139 (MQ=255)
cTGATCAGAATCGCTGGCGACTGACCAATCAGCAGCGAGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGAt > 1:832401/1‑139 (MQ=255)
cTGATCAGAATCGCTGGCGACTGACCAATCAGCAGCGAGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGAt > 1:266212/1‑139 (MQ=255)
tCGCTGGCGACTGACCAATCAGCAGCGAGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAAc < 1:541543/139‑1 (MQ=255)
cTGGCGACTGACCAATCAGCAGCGAGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATc > 1:1195175/1‑139 (MQ=255)
cTGGCGACTGACCAATCAGCAGCGAGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGCCGGGAATTTCTGCGCCAGATTCAAAATAACATc > 1:397171/1‑139 (MQ=255)
cGACTGACCAATCAGCAGCGAGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGc < 1:507770/139‑1 (MQ=255)
ccAATCAGCAGCGAGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACgaga < 1:597235/139‑1 (MQ=255)
ccAATCAGCAGCGAGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGCCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACgaga < 2:397171/139‑1 (MQ=255)
aaTCAGCAGCGAGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGagaag < 1:275956/139‑1 (MQ=255)
agcGAGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGa > 2:810623/1‑137 (MQ=255)
gcGAGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAag < 2:941925/139‑1 (MQ=255)
gcGAGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAag < 2:459649/139‑1 (MQ=255)
gcGAGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAag < 2:249388/139‑1 (MQ=255)
cGAGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAag > 1:408605/1‑138 (MQ=255)
agaTCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAagcag < 1:339809/139‑1 (MQ=255)
gaTCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAagcagc < 1:360092/139‑1 (MQ=255)
atcaAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCa < 2:1009905/138‑1 (MQ=255)
atcaAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCa < 2:408605/138‑1 (MQ=255)
atcaAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCa < 2:266212/138‑1 (MQ=255)
atcaAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGCCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCa < 2:294256/138‑1 (MQ=255)
aTGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATAcatca < 1:665187/139‑1 (MQ=255)
aTGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATAcatca < 1:703605/139‑1 (MQ=255)
aTGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATAcatca < 1:980905/139‑1 (MQ=255)
aTGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTGTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATAcatca < 1:547327/139‑1 (MQ=255)
ccGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATg < 2:832401/138‑1 (MQ=255)
gcgcCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTgcg < 2:31164/139‑1 (MQ=255)
cgcCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTgcgc > 1:1000715/1‑139 (MQ=255)
cgcCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTgcgc > 1:44285/1‑139 (MQ=255)
gATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCGCAg < 1:159151/139‑1 (MQ=255)
aTCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCGCAgg < 2:475881/139‑1 (MQ=255)
tCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCGCAGGTAGTCAGaa > 2:20354/1‑138 (MQ=255)
tGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGcc < 1:1163325/51‑1 (MQ=255)
tGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGcc > 2:1163325/1‑51 (MQ=255)
tGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACgaga < 1:835702/79‑1 (MQ=255)
tGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACgaga > 2:835702/1‑79 (MQ=255)
tGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCa > 1:1004318/1‑96 (MQ=255)
tGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCa < 2:1004318/96‑1 (MQ=255)
tGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCGCAGGTAGTCAGAATATCTg > 2:952610/1‑139 (MQ=255)
tGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCGCAGGTAGTCAGAATATCTg > 1:214578/1‑139 (MQ=255)
tGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCGCAGGTAGTCAGAATATCTg > 2:443081/1‑139 (MQ=255)
cccTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCGCAGGTAGTCAGAATATCTGCCGCTTCg > 2:811904/1‑139 (MQ=255)
cccTTTCAGCGGTAACTGAGATGCTGCCGGGAATTTCTGCGCCAGATTCaaaa < 1:60307/53‑1 (MQ=255)
cccTTTCAGCGGTAACTGAGATGCTGCCGGGAATTTCTGCGCCAGATTCaaaa > 2:60307/1‑53 (MQ=255)
ttCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATAcatca > 1:684320/1‑91 (MQ=255)
ttCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATAcatca < 2:684320/91‑1 (MQ=255)
ttCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCGCAGGTAGTCAGAATATCTGCCGCTTCGGTGc > 1:231116/1‑139 (MQ=255)
tCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGcc < 2:159186/38‑1 (MQ=255)
tCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGcc > 1:159186/1‑38 (MQ=255)
cGGTAACTGAGATGCTGCCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCGCAGGTAGTCAGAATATCTGCCGCTTCGGTGCCtttt > 2:669418/1‑139 (MQ=255)
tAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCGCAGGTAGTCAGAATATCTGCCGCTTCGGTGCCTTTTTGc < 2:708754/139‑1 (MQ=255)
tAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCGCAGGTAGTCAGAATATCTGCCGCTTCGGTGCCTTTTTGc < 1:811904/139‑1 (MQ=255)
tAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCGCAGGTAGTCAGAATATCTGCCGCTTCGGTGCCTTTTTGc < 1:230394/139‑1 (MQ=255)
tAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCGCAGGTAGTCAGAATATCTGCCGCTTCGGTGCCTTTTTGc < 2:1000715/139‑1 (MQ=255)
cTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCGCAGGTAGTCAGAATATCTGCCGCTTCGGTGCCTTTTTGCAGc < 1:439419/139‑1 (MQ=255)
tgctgtCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATAcatca > 2:669964/1‑74 (MQ=255)
tgctgtCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATAcatca < 1:669964/74‑1 (MQ=255)
ctgtCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCGCAGGTAGTCAGAATATCTGCCGCTTCGGTGCCTTTTTGCAGCCAGAATAc < 1:810623/139‑1 (MQ=255)
ctgcCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCGCAGGTAGTCAGAATATCTGCCGCTTCGGTGCCTTTTTGCAGCCAGAATAc < 1:669418/139‑1 (MQ=255)
|
ACCAAGACCGCTGATCAGAATCGCTGGCGACTGACCAATCAGCAGCGAGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGCCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCGCAGGTAGTCAGAATATCTGCCGCTTCGGTGCCTTTTTGCAGCCAGAATAC > NZ_CP009273/599601‑599864
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCAGCCATTGCACCAAGACCGCTGATCAGAATCGCTGGCGACTGACCAATCAGCAGCGAGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGCCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCGCAGGTAGTCAGAATATCTGCCGCTTCGGTGCCTTTTTGCAGCCAGAATACCGCCTGAATATTGA > NZ_CP009273/599590‑599878
|
GCAGCCATTGCACCAAGACCGCTGATCAGAATCGCTGGCGACTGACCAATCAGCAGCGAGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCT > SRR3722129.1104527/1‑151 (MQ=60)
CACCAAGACCGCTGATCAGAATCGCTGGCGACTGACCAATCAGCAGCGAGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATT > SRR3722129.844361/1‑151 (MQ=60)
CACCAAGACCGCTGATCAGAATCGCTGGCGACTGACCAATCAGCAGCGAGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATT > SRR3722129.269963/1‑151 (MQ=60)
atattttttttcaagcagaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAAT < SRR3722129.1179549/73‑1 (MQ=60)
GATCAGAATCGCTGGCGACTGACCAATCAGCAGCGAGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCC > SRR3722129.1211803/1‑151 (MQ=60)
GATCAGAATCGCTGGCGACTGACCAATCAGCAGCGAGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGCCGGGAATTTCTGCGCCAGATTCAAAATAACATCC > SRR3722129.402952/1‑151 (MQ=60)
tttttttttcaagcagaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGCCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGC < SRR3722129.61110/75‑1 (MQ=60)
ATCGCTGGCGACTGACCAATCAGCAGCGAGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACG < SRR3722129.549470/151‑1 (MQ=60)
GCGACTGACCAATCAGCAGCGAGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGAC < SRR3722129.515208/151‑1 (MQ=60)
ACCAATCAGCAGCGAGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGC < SRR3722129.606151/151‑1 (MQ=60)
acgagattcgccttagtctcgtgggctcggagatgtgtataagagacagGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGC < SRR3722129.847701/101‑1 (MQ=60)
CCAATCAGCAGCGAGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGC > SRR3722129.414529/1‑150 (MQ=60)
CAATCAGCAGCGAGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAG < SRR3722129.279921/151‑1 (MQ=60)
tttttttttcaagcagaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACA < SRR3722129.1156589/75‑1 (MQ=60)
GAGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCA < SRR3722129.344715/151‑1 (MQ=60)
AGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCAT < SRR3722129.365286/151‑1 (MQ=60)
cggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAAC < SRR3722129.679870/96‑1 (MQ=60)
AATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAAC < SRR3722129.675039/151‑1 (MQ=60)
AATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAAC < SRR3722129.713965/151‑1 (MQ=60)
AATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAAC < SRR3722129.994779/151‑1 (MQ=60)
AATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTGTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAAC < SRR3722129.555378/151‑1 (MQ=60)
GACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCG > SRR3722129.1014821/1‑151 (MQ=60)
GACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCG > SRR3722129.44839/1‑151 (MQ=60)
CGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCGCAGGTAGTCAGAAT < SRR3722129.161364/151‑1 (MQ=60)
GTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCtgtctcttatacacatctccgagcccacg > SRR3722129.1018457/1‑119 (MQ=60)
GTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCGCAGGTAGTCAGAATATCTGC > SRR3722129.217571/1‑151 (MQ=60)
GAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACctgtctcttatacacatctccgagcccacgagacta > SRR3722129.694416/1‑113 (MQ=60)
GAAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCGCAGGTAGTCAGAATATCTGCCGCTTCGGTGCC > SRR3722129.234405/1‑151 (MQ=60)
AAATATCCCTTTCAGCGGTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATctgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccgtcttctgcttgaaaaaaaaaaaaaaaaaaaagact > SRR3722129.161399/1‑60 (MQ=60)
GTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCGCAGGTAGTCAGAATATCTGCCGCTTCGGTGCCTTTTTGCAGCCAGAATAC < SRR3722129.233668/151‑1 (MQ=60)
GTAACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCGCAGGTAGTCAGAATATCTGCCGCTTCGGTGCCTTTTTGCAGCCAGAATAC < SRR3722129.823579/151‑1 (MQ=60)
ACTGAGATGCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCGCAGGTAGTCAGAATATCTGCCGCTTCGGTGCCTTTTTGCAGCCAGAATACCGC < SRR3722129.445794/151‑1 (MQ=60)
GCTGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCGCAGGTAGTCAGAATATCTGCCGCTTCGGTGCCTTTTTGCAGCCAGAATACCGCCTGAATAT < SRR3722129.822287/151‑1 (MQ=60)
GCTGCCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCGCAGGTAGTCAGAATATCTGCCGCTTCGGTGCCTTTTTGCAGCCAGAATACCGCCTGAATAT < SRR3722129.679322/151‑1 (MQ=60)
TGTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCGCAGGTAGTCAGAATATCTGCCGCTTCGGTGCCTTTTTGCAGCCAGAATACCGCCTGAATATTG > SRR3722129.409076/1‑151 (MQ=60)
GTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCGCAGGTAGTCAGAATATCTctgtctcttatacacatctccgagcccacgagactaaggcgaatct > SRR3722129.220319/1‑105 (MQ=60)
GTCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCGCAGGTAGTCAGAATATCTGCCGCTTCGGTGCCTTTTTGCAGCCAGAATACCGCCTGAATATTG > SRR3722129.759953/1‑150 (MQ=60)
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GCAGCCATTGCACCAAGACCGCTGATCAGAATCGCTGGCGACTGACCAATCAGCAGCGAGATCATCAAAATGCCGACCAGAATCGCGCCGATCAGTTTAATCCCCTGAAATATCCCTTTCAGCGGTAACTGAGATGCTGCCGGGAATTTCTGCGCCAGATTCAAAATAACATCCAGCAACGAGAAGACTGAAAGCAGCGCATACATCATGATCCACAACTGCGCGCAGGTAGTCAGAATATCTGCCGCTTCGGTGCCTTTTTGCAGCCAGAATACCGCCTGAATATTGA > NZ_CP009273/599590‑599878
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
