Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F5 I175 R1
|
328 |
64.7 |
2582366 |
96.2% |
2484236 |
120.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
628,572 |
G→A |
A121V (GCC→GTC) |
hcxA ← |
hydroxycarboxylate dehydrogenase HcxA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 628,572 | 0 | G | A | 100.0%
| 203.2
/ NA
| 56 | A121V (GCC→GTC) | hcxA | hydroxycarboxylate dehydrogenase HcxA |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (29/27); total (29/27) |
TTGCGGTGCATTGAGGATAATCTCCGGTTCCACCAGCACCATAAAATTGGCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGGCGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGCTGCGGTCGTCACCGGACTCAGCCGCCAGTTGT > NZ_CP009273/628442‑628703
|
ttgCGGTGCATTGAGGATAATCTCCGGTTCCACCAGCACCATAAAATTGGCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGAtc > 2:489074/1‑139 (MQ=255)
ggTGCATTTAGGATAATCTCCGGTTCCACCAGCACCATAAAATTGGCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGAtcgtcg > 2:271876/1‑139 (MQ=255)
cATTGAGGATAATCTCCGGTTCCACCAGCACCATAAAATTGGCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAAc > 2:523725/1‑139 (MQ=255)
ttGAGGATAATCTCCGGTTCCACCAGCACCATAAAATTGGCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACgg > 2:310390/1‑139 (MQ=255)
aTAATCTCCGGTTCCACCAGCACCATAAAATTGGCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGcaaca > 1:84768/1‑138 (MQ=255)
aaTCTCCGGTTCCACCAGCACCATAAAATTGGCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAAc > 2:91888/1‑139 (MQ=255)
aaTCTCCGGTTCCACCAGCACCATAAAATTGGCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAAc > 2:300059/1‑139 (MQ=255)
cGGTTCCACCAGCACCATAAAATTGGCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACgg < 2:784679/135‑1 (MQ=255)
ggTTCCACCAGCACCATAAAATTGGCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGAc > 2:384901/1‑139 (MQ=255)
caGCACCATAAAATTGGCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGAcgg < 1:300059/139‑1 (MQ=255)
tAAAATTGGCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGAt < 1:1179315/97‑1 (MQ=255)
tAAAATTGGCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGAt > 2:1179315/1‑97 (MQ=255)
tAAAATTGGCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAg > 1:200411/1‑139 (MQ=255)
tAAAATTGGCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAg > 1:881808/1‑139 (MQ=255)
gCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTcg < 1:384901/139‑1 (MQ=255)
gCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTcg < 1:523725/139‑1 (MQ=255)
gCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTcg < 1:579997/139‑1 (MQ=255)
gtcgtcGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTcgcg < 2:84768/139‑1 (MQ=255)
gtcgtcGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTcgcg < 1:342804/139‑1 (MQ=255)
gtcgtcGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTcgcg < 1:434908/139‑1 (MQ=255)
gtcgAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGc > 2:625444/1‑129 (MQ=255)
gtcgAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGc < 1:625444/129‑1 (MQ=255)
gAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTc < 1:1072307/138‑1 (MQ=255)
aTAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTg < 1:771959/137‑1 (MQ=255)
cTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACg < 1:91888/139‑1 (MQ=255)
cTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACg < 1:281702/139‑1 (MQ=255)
cTGTCCGGCATCATTATACCAGACGGAGAGCGGTGGCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACg < 2:292224/139‑1 (MQ=255)
gTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTcgcg > 2:670521/1‑110 (MQ=255)
gTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTcgcg < 1:670521/110‑1 (MQ=255)
tCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGcc < 1:310390/138‑1 (MQ=255)
tcatTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATcacca > 2:156410/1‑139 (MQ=255)
taCCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGCTg < 1:484272/138‑1 (MQ=255)
gACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGCTg > 1:253351/1‑133 (MQ=255)
gACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGCTg < 2:253351/133‑1 (MQ=255)
gACGGAGAGCGGTGTCCAGGAGGCGCAGGTGACGGCCATCGTCGGAACGGCAACAAACGGCAGCCCGAGACGGCGGGCGAGGGACTTCGCGGTGTCGAGCAGTGCACCGCCACCGCCGCCAATCACCAAGCTGCGggcg > 2:98234/1‑139 (MQ=255)
aCGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAg < 2:950281/98‑1 (MQ=255)
aCGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAg > 1:950281/1‑98 (MQ=255)
aCGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGCTGCGgtcgt > 2:28471/1‑139 (MQ=255)
aCGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGCTGCGgt > 2:260149/1‑136 (MQ=255)
aCGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGCTGCGgt < 1:260149/136‑1 (MQ=255)
agagCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTg > 2:809958/1‑99 (MQ=255)
agagCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTg < 1:809958/99‑1 (MQ=255)
agagCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGCTGCGGTCGTCAcc > 1:173026/1‑139 (MQ=255)
agCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGCGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGCTGCGGTCGTCACCg > 1:366128/1‑138 (MQ=255)
agCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGGGTCGAGCAGGGCACCGCCACCGACGCCAATCACCACGCTGCGGGCGTCACCg > 2:1022535/1‑138 (MQ=255)
gtgtCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGCTGCGGTCGTCACCGGACt > 1:1242893/1‑138 (MQ=255)
tgtCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGCTGCGGTCGTCACCGGACt > 1:276481/1‑137 (MQ=255)
ggcggcGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGCTGCGGTCGTCACCGGACTCAgccgcc < 2:200411/139‑1 (MQ=255)
gcggcgCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGCTGCGGTCGTCACCGGACTCAgccgc > 2:1278161/1‑137 (MQ=255)
cggcgCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGCTGCGGTCGTCACCGGACTCAGCCGCCAg < 1:877659/139‑1 (MQ=255)
cggcgCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGCTGCGGTCGTCACCGGACTCAGCCGCCAg < 1:780327/139‑1 (MQ=255)
gcgcAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTcgcg > 2:871835/1‑69 (MQ=255)
gcgcAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTcgcg < 1:871835/69‑1 (MQ=255)
gcgcAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTc < 2:690034/74‑1 (MQ=255)
gcgcAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTc > 1:690034/1‑74 (MQ=255)
gcAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGCTGCGGTCGTCACCGGACTCAGCCGCCAgttgt > 2:455521/1‑139 (MQ=255)
|
TTGCGGTGCATTGAGGATAATCTCCGGTTCCACCAGCACCATAAAATTGGCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGGCGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGCTGCGGTCGTCACCGGACTCAGCCGCCAGTTGT > NZ_CP009273/628442‑628703
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAGATATTGTTGCGGTGCATTGAGGATAATCTCCGGTTCCACCAGCACCATAAAATTGGCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGGCGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGCTGCGGTCGTCACCGGACTCAGCCGCCAGTTGTTGTACATCGCTTTCG > NZ_CP009273/628433‑628718
|
CAGATATTGTTGCGGTGCATTGAGGATAATCTCCGGTTCCACCAGCACCATAAAATTGGCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTC < SRR3722129.242069/151‑1 (MQ=60)
cgtgggctcggagatgtgtataagagacagCACCAGCACCATAAAATTGGCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGG < SRR3722129.1195721/119‑1 (MQ=60)
GTGCATTGAGGATAATCTCCGGTTCCACCAGCACCATAAAATTGGCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAA > SRR3722129.85871/1‑150 (MQ=60)
CCGGTTCCACCAGCACCATAAAATTGGCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGGCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGAC < SRR3722129.469525/147‑1 (MQ=60)
CACCAGCACCATAAAATTGGCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGG > SRR3722129.203215/1‑151 (MQ=60)
CACCAGCACCATAAAATTGGCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGG > SRR3722129.894371/1‑151 (MQ=60)
CCAGCACCATAAAATTGGCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGC < SRR3722129.304345/151‑1 (MQ=60)
AAATTGGCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGT < SRR3722129.634739/151‑1 (MQ=60)
GGCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGC < SRR3722129.588561/151‑1 (MQ=60)
GGCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGC < SRR3722129.531380/151‑1 (MQ=60)
GGCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGC < SRR3722129.390529/151‑1 (MQ=60)
gaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacaGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAG < SRR3722129.884279/92‑1 (MQ=60)
agatgtgtataagagacagATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAG < SRR3722129.680440/132‑1 (MQ=60)
CGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAG < SRR3722129.347750/151‑1 (MQ=60)
CGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAG < SRR3722129.441222/151‑1 (MQ=60)
CGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCAC < SRR3722129.1087336/150‑1 (MQ=60)
cgtgggctcggagatgtgtataagagacagATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCG < SRR3722129.821612/121‑1 (MQ=60)
CATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCG < SRR3722129.783161/149‑1 (MQ=60)
CCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCAC < SRR3722129.285746/151‑1 (MQ=60)
CCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCAC < SRR3722129.93095/151‑1 (MQ=60)
GTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGC < SRR3722129.314823/150‑1 (MQ=60)
TCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGCTGCGGTCGT > SRR3722129.256931/1‑151 (MQ=60)
CATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCtgtctcttatacacatctccgagcccacg > SRR3722129.963715/1‑121 (MQ=60)
ATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGCTGCGGTCGTCACCG > SRR3722129.175403/1‑151 (MQ=60)
ATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGCTGCGGTCGTCACC < SRR3722129.491272/150‑1 (MQ=60)
ACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGCGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGCTGCGGTCGTCACCGG > SRR3722129.371501/1‑150 (MQ=60)
CCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGCTGCGGTCGTCACCGGAC < SRR3722129.263822/151‑1 (MQ=60)
GACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGCTGCGGTCGTCACCGGACTC > SRR3722129.1260147/1‑150 (MQ=60)
ACGGAGAGCGGTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGCTGCGGTCGTCACCGGACTC > SRR3722129.280452/1‑149 (MQ=60)
GTGTCCAGGCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCtgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccg > SRR3722129.700216/1‑97 (MQ=60)
GCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGCTGCGGTCGTCACCGGACTCAGCCGCCAGTTGTTGTACAT < SRR3722129.791658/151‑1 (MQ=60)
GCGGCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGCTGCGGTCGTCACCGGACTCAGCCGCCAGTTGTTGTACAT < SRR3722129.890174/151‑1 (MQ=60)
GCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGCctgtctcttatacacatctccgagcccacgagactaaggcg > SRR3722129.685161/1‑109 (MQ=60)
GCGCAGGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGCTGCGGTCGTCACCGGACTCAGCCGCCAGTTGTTGTACATCGC > SRR3722129.964135/1‑151 (MQ=60)
GGTGACGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGCTGCGGTCGctgtctcttatacacatctccgagcccacgagactaagg > SRR3722129.785088/1‑112 (MQ=60)
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CAGATATTGTTGCGGTGCATTGAGGATAATCTCCGGTTCCACCAGCACCATAAAATTGGCGTCGTCGAAAATCTCATAATGCAGCGCCTGTCCGGCATCATTATACCAGACGGAGAGCGGTGTCCAGGCGGCGCAGGTGGCGGCGATCGTCGGAACGGCAACAAACGGCAGACCGAGACGGCGGGCGAGGGCTTTCGCGGTGTCGAGCAGTGCACCGCCACCGACGCCAATCACCACGCTGCGGTCGTCACCGGACTCAGCCGCCAGTTGTTGTACATCGCTTTCG > NZ_CP009273/628433‑628718
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
