Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F5 I175 R1
|
328 |
64.7 |
2582366 |
96.2% |
2484236 |
120.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
640,333 |
A→C |
W43G (TGG→GGG) |
rna ← |
ribonuclease I |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 640,333 | 0 | A | C | 95.0%
| 207.8
/ 2.7
| 60 | W43G (TGG→GGG) | rna | ribonuclease I |
| Reads supporting (aligned to +/- strand): ref base A (1/2); new base C (27/30); total (28/32) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.95e-01 |
CCGATTTAGGCAATCCTGGCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCGCGAGCAACGCGGCGTTACGCCAGAATGCTTTCATAATGG > NZ_CP009273/640198‑640464
|
ccGATTTAGGCAATCCTGGCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGga < 2:832311/139‑1 (MQ=255)
cGATTTAGGCAATCCTGGCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGgag < 1:822185/139‑1 (MQ=255)
cGATTTAGGCAATCCTGGCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGgag < 1:462191/139‑1 (MQ=255)
cGATTTAGGCAATCCTGGCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGgag < 2:60489/139‑1 (MQ=255)
cGATTTAGGCAATCCTGGCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGgag < 2:1105476/139‑1 (MQ=255)
cGATTTAGGCAATCCTGGCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGgag < 1:86611/139‑1 (MQ=255)
aGGCAATCCTGGCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGc < 2:86065/138‑1 (MQ=255)
tCCTGGCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACa > 1:1192022/1‑139 (MQ=255)
gCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACagcgat > 1:1257083/1‑134 (MQ=255)
gCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGc > 1:866494/1‑138 (MQ=255)
gCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTAGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGc > 2:1214714/1‑138 (MQ=255)
aGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGgag > 2:1145710/1‑117 (MQ=255)
aGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGgag < 1:1145710/117‑1 (MQ=255)
aGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCg < 1:98778/134‑1 (MQ=255)
aGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCg > 2:98778/1‑134 (MQ=255)
aGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCaa < 2:804368/139‑1 (MQ=255)
aCCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCaaaa < 1:715491/139‑1 (MQ=255)
aTGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCg > 1:373855/1‑139 (MQ=255)
aTGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCg > 1:605915/1‑139 (MQ=255)
tGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGc > 1:908989/1‑139 (MQ=255)
tCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTg > 2:179025/1‑139 (MQ=255)
tCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTg > 1:501027/1‑139 (MQ=255)
tCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTg > 2:820111/1‑139 (MQ=255)
tCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTg > 1:1073591/1‑139 (MQ=255)
gAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCg < 1:118587/118‑1 (MQ=255)
gAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCg > 2:118587/1‑118 (MQ=255)
gAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGAAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGttt > 1:1102851/1‑139 (MQ=255)
aaaaTCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGtttt > 2:961367/1‑139 (MQ=255)
aaaaTCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGtttt > 1:975808/1‑139 (MQ=255)
aaaaTCAGCTTTGTTGGTCGTGTCGGTTTGCAGGCGACATTCATCTCTTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGtttt < 2:222433/139‑1 (MQ=255)
aGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTg < 1:654993/138‑1 (MQ=255)
ttgGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGgag < 2:528621/87‑1 (MQ=255)
ttgGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGgag > 1:528621/1‑87 (MQ=255)
tGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCag > 2:859171/1‑136 (MQ=255)
gCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCagaag < 1:941768/138‑1 (MQ=255)
gttcgttACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGt > 1:881235/1‑111 (MQ=255)
gttcgttACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGt < 2:881235/111‑1 (MQ=255)
ttcgttACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGgag > 1:721469/1‑52 (MQ=255)
ttcgttACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGgag < 2:721469/52‑1 (MQ=255)
ttcgttACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAAcc > 2:452827/1‑139 (MQ=255)
cgttACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACcgc > 2:380928/1‑139 (MQ=255)
ttACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGc < 2:289421/53‑1 (MQ=255)
ttACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGc > 1:289421/1‑53 (MQ=255)
aCGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCGCGAg < 1:452827/138‑1 (MQ=255)
aTCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCagag > 2:684290/1‑119 (MQ=255)
aTCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCagag < 1:684290/119‑1 (MQ=255)
aTCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCGCGAGCAACgcggcg < 2:605915/139‑1 (MQ=255)
tCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCGCGAGCAACGCGGCGt < 2:724038/139‑1 (MQ=255)
ctctGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCGCGAGCAACGCGGCGTTACGCCAGa < 1:247308/139‑1 (MQ=255)
ctctGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCGCGAGCAACGCGGCGTTACGCCAGa < 1:394829/139‑1 (MQ=255)
tGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCGCGAGCAACGCGGCGTTACGCCAGaa < 2:1141281/137‑1 (MQ=255)
ggCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCGCGAGCAACGCGGCGTTACGCCAGAATGc > 1:106481/1‑139 (MQ=255)
gCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCt > 2:653181/1‑73 (MQ=255)
gCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCt < 1:653181/73‑1 (MQ=255)
gCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCGCGAGCAACGCGGCGTTACGCCAGAATGCt < 1:421298/139‑1 (MQ=255)
cGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCGCGAGCAACGCGGCGTTACGCCAGAATGCTTTCATAAt < 1:294997/139‑1 (MQ=255)
cGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCGCGAGCAACGCGGCGTTACGCCAGAATGCTTTCATAAt < 1:951030/139‑1 (MQ=255)
cGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCGCGAGCAACGCGGCGTTACGCCAGAATGCTTTCATAAt < 1:859171/139‑1 (MQ=255)
ggTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCGCGAGCAACGCGGCGTTACGCCAGAATGCTTTCATAATg < 1:179025/139‑1 (MQ=255)
gTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCGCGAGCAACGCGGCGTTACGCCAGAATGCTTTCATAATgg > 2:274159/1‑139 (MQ=255)
|
CCGATTTAGGCAATCCTGGCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCGCGAGCAACGCGGCGTTACGCCAGAATGCTTTCATAATGG > NZ_CP009273/640198‑640464
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACGGGCAGCAACCGATTTAGGCAATCCTGGCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCGCGAGCAACGCGGCGTTACGCCAGAATGCTTTCATAATGGGTGTGGAACTCATACAT > NZ_CP009273/640187‑640481
|
ACGGGCAGCAACCGATTTAGGCAATCCTGGCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAG < SRR3722129.594181/151‑1 (MQ=60)
gggctcggagatgtgtataagagacagGGCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAG < SRR3722129.542605/123‑1 (MQ=60)
CCGATTTAGGCAATCCTGGCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGAC < SRR3722129.468910/151‑1 (MQ=60)
CCGATTTAGGCAATCCTGGCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGAC < SRR3722129.834014/151‑1 (MQ=60)
CCGATTTAGGCAATCCTGGCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGAC < SRR3722129.87737/151‑1 (MQ=60)
ataagagacagATCCTGGCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGAC < SRR3722129.1161631/139‑1 (MQ=60)
GATTTAGGCAATCCTGGCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACAT > SRR3722129.1208610/1‑151 (MQ=60)
AGGCAATCCTGGCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCG > SRR3722129.878868/1‑150 (MQ=60)
AGGCAATCCTGGCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGAC‑‑AGCGATC > SRR3722129.1274567/1‑151 (MQ=60)
ataagagacagATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGC < SRR3722129.120215/140‑1 (MQ=60)
GGCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGC < SRR3722129.100130/151‑1 (MQ=60)
GGCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGC > SRR3722129.614940/1‑151 (MQ=60)
GGCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGC > SRR3722129.379325/1‑151 (MQ=60)
GCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCC > SRR3722129.921864/1‑151 (MQ=60)
GACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTG < SRR3722129.725990/151‑1 (MQ=60)
ACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGT > SRR3722129.508265/1‑151 (MQ=60)
ACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGT > SRR3722129.1088637/1‑151 (MQ=60)
ATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGAAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTT > SRR3722129.1118262/1‑151 (MQ=60)
TGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTG > SRR3722129.989621/1‑151 (MQ=60)
AATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACctgtctcttatacacatctccgagcccacgagactaaggcg > SRR3722129.536338/1‑109 (MQ=60)
CAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGG < SRR3722129.664745/150‑1 (MQ=60)
acggcatacgatattcgccttagtctcgtgggctcggagatgtgtataagagacaGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGC < SRR3722129.662908/96‑1 (MQ=60)
TGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGC < SRR3722129.955104/150‑1 (MQ=60)
ACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGctgtctcttatacacatc > SRR3722129.893789/1‑133 (MQ=60)
CATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACctgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccgtcttctgcttgaaaaaaaaaa > SRR3722129.732046/1‑74 (MQ=60)
CATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCctgtctcttatacacatctccgagcccacgagactaaggcgaatatcgtatgccgtcttctgcttgaaaaaaaaa > SRR3722129.293579/1‑75 (MQ=60)
aagagacaGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCGCGAGC < SRR3722129.694385/142‑1 (MQ=60)
TACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCGCGAGCAACGCGGCGT < SRR3722129.459376/150‑1 (MQ=60)
GTGTTGACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCGCGAGCAACGCGGCGTTACGCCAGAATGCT > SRR3722129.107935/1‑151 (MQ=60)
ACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCGCGAGCAACGCGGCGTTACGCCAGAATGCTTTCATA < SRR3722129.400585/151‑1 (MQ=60)
ACTCTGGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCGCGAGCAACGCGGCGTTACGCCAGAATGCTTTCATA < SRR3722129.250812/151‑1 (MQ=60)
GGCAAAATCCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCGCGAGCAACGCGGCGTTACGCCAGAATGCTTTCATAATGGG < SRR3722129.427430/151‑1 (MQ=60)
CCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCGCGAGCAACGCGGCGTTACGCCAGAATGCTTTCATAATGGGTGTGGAAC < SRR3722129.871425/151‑1 (MQ=60)
CCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCGCGAGCAACGCGGCGTTACGCCAGAATGCTTTCATAATGGGTGTGGAAC < SRR3722129.299223/151‑1 (MQ=60)
CCGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCGCGAGCAACGCGGCGTTACGCCAGAATGCTTTCATAATGGGTGTGGAAC < SRR3722129.964471/151‑1 (MQ=60)
CGGTTTGCCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCGCGAGCAACGCGGCGTTACGCCAGAATGCTTTCATAATGGGTGTGGAACT < SRR3722129.181482/151‑1 (MQ=60)
CCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCGCGAGCAACGCGGCGTTACGCCAGAATGCTTTCATAATGGGTGTGGAACTCATACAT < SRR3722129.84130/151‑1 (MQ=60)
CCCGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCGCGAGCAACGCGGCGTTACGCCAGAATGCTTTCATAATGGGTGTGGAACTCATACAT < SRR3722129.337306/151‑1 (MQ=60)
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ACGGGCAGCAACCGATTTAGGCAATCCTGGCCACAGACCATGTACGGTCAGAAAATCAGCTTTGTTGGTCGTTTCGGTTTGCAGGCGACATTCATCTCGTTCGTTACGATTTCGATCGTGTTGACTCTGGCAAAATCCGGTTTGCCAGGAGAGGGCCAGGACATAGCGATCAAAATCGCCATACTGTTTTGCCTGCAACGCTAAGGCGTTGGCAGAAGAGAAGGGAAGCAGAGAAACCGCGAGCAACGCGGCGTTACGCCAGAATGCTTTCATAATGGGTGTGGAACTCATACAT > NZ_CP009273/640187‑640481
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
