Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F5 I175 R1
|
328 |
64.7 |
2582366 |
96.2% |
2484236 |
120.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
683,163 |
G→A |
A14V (GCG→GTG) |
gltI ← |
glutamate/aspartate ABC transporter substrate‑binding protein GltI |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 683,163 | 0 | G | A | 94.3%
| 241.2
/ 3.2
| 70 | A14V (GCG→GTG) | gltI | glutamate/aspartate ABC transporter substrate‑binding protein GltI |
| Reads supporting (aligned to +/- strand): ref base G (2/2); new base A (34/32); total (36/34) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.58e-01 |
ATTGTCGTAATAAGAGAAAGGCACTGAAGATTCACGGTGACCGACGACAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCGCCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTGCAACTTTATTGTGCAGTGTTGTG > NZ_CP009273/683030‑683298
|
aTTGTCGTAATAAGAGAAAGGCACTGAAGATTCACGGTGACCGACGACAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAgg > 2:235747/1‑139 (MQ=255)
agaAAGGCACTGAAGATTCACGGTGACCGACGACAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGc < 2:1183869/127‑1 (MQ=255)
agaAAGGCACTGAAGATTCACGGTGACCGACGACAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGc > 1:1183869/1‑127 (MQ=255)
agaAAGGCACTGAAGATTCACGGTGACCGACGACAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCtgt > 1:1290492/1‑139 (MQ=255)
aaaGGCACTGAAGATTCACGGTGACCGACGACAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTgg > 2:289703/1‑139 (MQ=255)
aaaGGCACTGAAGATTCACGGTGACCGACGACAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTgg > 1:514513/1‑139 (MQ=255)
aaGGCACTGAAGATTCACGGTGACCGACGACAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGc < 2:198073/139‑1 (MQ=255)
aaGGCACTGAAGATTCACGGTGACCGACGACAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGc < 2:833510/139‑1 (MQ=255)
aGGCACTGAAGATTCACGGTGACCGACGACAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGCAAGCACCAGGGCGAGGATTGCTGTgg > 1:8618/1‑137 (MQ=255)
aGGCACTGAAGATTCACGGAGACCAACGACAATCACACCGTTTTTGGCGATTTTATCCAGAGTACTACCCGCTGCCGGGGCGGCGTCGTCTGCCTGGGCCAGTCCTGAGGAAAGCACCAGGGCGAGGATTGCtgggt > 2:1287057/1‑134 (MQ=255)
ggCACTGAAGATTCACGGTGACCGACGACAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAg > 1:409024/1‑139 (MQ=255)
tCACGGTGACCGACGACAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGGAAtt > 1:833216/1‑139 (MQ=255)
gACCGACGACAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGGTTACGTAATTGCATATc > 2:1015267/1‑139 (MQ=255)
ccGACGACAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCa < 2:514513/139‑1 (MQ=255)
cgacgaCAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCaa < 1:271405/139‑1 (MQ=255)
cgacgaCAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCaa < 1:289703/139‑1 (MQ=255)
cgacgaCAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCaa < 2:698076/139‑1 (MQ=255)
aTCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTa > 2:306552/1‑139 (MQ=255)
cacCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCTGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTAtctt < 1:1256441/139‑1 (MQ=255)
tttttGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCg > 1:1215459/1‑139 (MQ=255)
tttttGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCg > 1:60886/1‑139 (MQ=255)
tttttGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGGTTACGGAATTGCATATCCAACTCCTTTATCTTCTGCg > 2:715190/1‑139 (MQ=255)
gCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAg < 1:319834/138‑1 (MQ=255)
cGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGaa < 2:1215459/139‑1 (MQ=255)
ttGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCACCTCCTTTATCTTCGGCGTTAAAAACGCa < 2:88881/138‑1 (MQ=255)
gTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATg < 1:500652/138‑1 (MQ=255)
gTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATg < 2:586427/138‑1 (MQ=255)
gagTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATAcc < 1:1147736/139‑1 (MQ=255)
tGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCttt < 1:771241/104‑1 (MQ=255)
tGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCttt > 2:771241/1‑104 (MQ=255)
ccGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAg < 1:1005824/139‑1 (MQ=255)
gCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAg < 2:794261/114‑1 (MQ=255)
gCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAg > 1:794261/1‑114 (MQ=255)
gCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAgtg > 2:1164338/1‑139 (MQ=255)
gCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAgtg > 1:1073184/1‑139 (MQ=255)
tGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTTTGCGTGtt > 2:412326/1‑139 (MQ=255)
tGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGtt > 1:918325/1‑139 (MQ=255)
ccGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTAtcttc > 2:292744/1‑101 (MQ=255)
ccGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTAtcttc < 1:292744/101‑1 (MQ=255)
gcgTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATc > 1:16328/1‑77 (MQ=255)
gcgTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATc < 2:16328/77‑1 (MQ=255)
gcgTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTa > 1:684133/1‑139 (MQ=255)
gcgTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTa > 2:556004/1‑139 (MQ=255)
tCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTtgt < 2:993355/119‑1 (MQ=255)
tCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTtgt > 1:993355/1‑119 (MQ=255)
tCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCt > 1:1162595/1‑139 (MQ=255)
ccTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTg < 2:96353/136‑1 (MQ=255)
ccTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTg < 2:352544/136‑1 (MQ=255)
ccTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTGCaa < 2:1290492/139‑1 (MQ=255)
ccTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTGCaa < 1:306552/139‑1 (MQ=255)
ccTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTGCaa < 2:1073184/139‑1 (MQ=255)
gtgCCAGTCCTGCGGAAAGCGCCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTAtcttct < 1:858538/81‑1 (MQ=255)
gtgCCAGTCCTGCGGAAAGCGCCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTAtcttct > 2:858538/1‑81 (MQ=255)
tgCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGa > 1:649609/1‑98 (MQ=255)
tgCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGa < 2:649609/98‑1 (MQ=255)
ccAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTGCAACTTTa < 2:868006/138‑1 (MQ=255)
ccAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTGCAACTTTa < 1:4959/138‑1 (MQ=255)
tCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGa < 2:1176457/92‑1 (MQ=255)
tCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGa > 1:1176457/1‑92 (MQ=255)
tGCGGAAAGCGCCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCg > 1:805215/1‑95 (MQ=255)
tGCGGAAAGCGCCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCg < 2:805215/95‑1 (MQ=255)
cGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTGCAACTTTATtgtg < 1:425507/134‑1 (MQ=255)
cGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTGCAACTTTATTGTGCAgtg > 1:1081947/1‑139 (MQ=255)
cGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTGCAACTTTATTGTGCAgtg > 1:355138/1‑139 (MQ=255)
cGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTGCAACTTTATTGTGCAgtg > 1:623074/1‑139 (MQ=255)
cGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTGCAACTTTATTGTGCAgtg > 2:1215566/1‑139 (MQ=255)
cGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGGTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTGCAACTTTATtgtg > 2:425507/1‑134 (MQ=255)
aaGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTGCAACTTTATTGTGCAGtgttgt < 2:684133/139‑1 (MQ=255)
aGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTGCAACTTTATTGTGCAGTGTtgtg > 1:240092/1‑139 (MQ=255)
aGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTGCAACTTTATTGTGCAGTGTtgtg < 1:556004/139‑1 (MQ=255)
|
ATTGTCGTAATAAGAGAAAGGCACTGAAGATTCACGGTGACCGACGACAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCGCCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTGCAACTTTATTGTGCAGTGTTGTG > NZ_CP009273/683030‑683298
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CACTTTTTGCTGATTGTCGTAATAAGAGAAAGGCACTGAAGATTCACGGTGACCGACGACAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCGCCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGA > NZ_CP009273/683018‑683309
|
tgtttctttttttttttttttttcaagcagaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAG < SRR3722129.1043310/61‑1 (MQ=60)
ACTTTTTGCTGATTGTCGTAATAAGAGAAAGGCACTGAAGATTCACGGTGACCGACGACAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGG < SRR3722129.266267/151‑1 (MQ=60)
ACTTTTTGCTGATTGTCGTAATAAGAGAAAGGCACTGAAGATTCACGGTGACCGACGACAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGG < SRR3722129.173961/151‑1 (MQ=60)
gctcggagatgtgtATAAGAGACAGGCACTGAAGATTCACGGTGACCGACGACAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGA < SRR3722129.266581/137‑1 (MQ=60)
GTCGTAATAAGAGAAAGGCACTGAAGATTCACGGTGACCGACGACAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGct > SRR3722129.1200341/1‑149 (MQ=60)
GTCGTAATAAGAGAAAGGCACTGAAGATTCACGGTGACCGACGACAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTG > SRR3722129.1308367/1‑151 (MQ=60)
CGTAATAAGAGAAAGGCACTGAAGATTCACGGTGACCGACGACAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGC > SRR3722129.522033/1‑151 (MQ=60)
TAATAAGAGAAAGGCACTGAAGATTCACGGTGACCGACGACAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGCAAGCACCAGGGCGAGGATTGCTGTGGC > SRR3722129.8723/1‑149 (MQ=60)
AATAAGAGAAAGGCACTGAAGATTCACGGTGACCGACGACAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGG > SRR3722129.414953/1‑151 (MQ=60)
GCACTGAAGATTCACGGTGACCGACGACAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGGAATTG > SRR3722129.845189/1‑151 (MQ=60)
CCGACGACAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCT < SRR3722129.293864/151‑1 (MQ=60)
CCGACGACAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCT < SRR3722129.275254/151‑1 (MQ=60)
gctcggagatgtgtataagagacagGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGT < SRR3722129.782440/126‑1 (MQ=60)
CAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGT > SRR3722129.1232399/1‑151 (MQ=60)
CAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGT > SRR3722129.61694/1‑151 (MQ=60)
ACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCTGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGA < SRR3722129.1273914/151‑1 (MQ=60)
gggctcggagatgtgtataagagacagACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAA < SRR3722129.296941/123‑1 (MQ=60)
cgagattcgccttagtctcgtgggctcggagatgtgtataagagacagGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCGCCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAAC < SRR3722129.870784/103‑1 (MQ=60)
GGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGAT < SRR3722129.324400/150‑1 (MQ=60)
TGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTG < SRR3722129.507887/150‑1 (MQ=60)
AGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTG < SRR3722129.1163688/151‑1 (MQ=60)
GAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATctgtctcttatacac > SRR3722129.805758/1‑136 (MQ=60)
GAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGT > SRR3722129.1088225/1‑151 (MQ=60)
GTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTT > SRR3722129.931384/1‑151 (MQ=60)
CCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTG < SRR3722129.1019995/151‑1 (MQ=60)
CTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTActgtctcttatacacatctccgagcccacgagactaaggcgaatatcgtatg > SRR3722129.16524/1‑99 (MQ=60)
CTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTAT > SRR3722129.694226/1‑151 (MQ=60)
CCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGctgtctctt > SRR3722129.1007367/1‑141 (MQ=60)
GGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTG > SRR3722129.1178809/1‑151 (MQ=60)
TCATCTGCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGctgtctcttatacacattccgagcccacg > SRR3722129.659287/1‑120 (MQ=60)
GCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGctgtctcttatacacatctccgagcccacgagacta > SRR3722129.1192833/1‑114 (MQ=60)
GCCTGTGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTGCAACTTTATTGTGC < SRR3722129.310933/151‑1 (MQ=60)
TGTGCCAGTCCTGCGGAAAGCGCCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTctgtctcttatacacatctccgagcccacgagac > SRR3722129.816826/1‑117 (MQ=60)
TGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTGCAACTTTATTGTGCAGTGT > SRR3722129.632337/1‑151 (MQ=60)
TGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTGCAACTTTATTGTGCAGTGT > SRR3722129.1097103/1‑151 (MQ=60)
TGCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTGCAACTTTATTGTGCAGTGT > SRR3722129.360262/1‑151 (MQ=60)
GCCAGTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTGCAACTTTATTGTGCAGTGT < SRR3722129.5023/150‑1 (MQ=60)
GTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTGCAACTTTATTGTGCAGTGTTGTGC > SRR3722129.243501/1‑151 (MQ=60)
GTCCTGCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTGCAACTTTATTGTGCAGTGTTGTGC < SRR3722129.431696/151‑1 (MQ=60)
GCGGAAAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTGCAACTTTATTGTGCAGTGTctgtctctt > SRR3722129.1037016/1‑141 (MQ=60)
AAGCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGA < SRR3722129.564276/151‑1 (MQ=60)
GCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGA > SRR3722129.711333/1‑149 (MQ=60)
GCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGA > SRR3722129.1194497/1‑149 (MQ=60)
GCACCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGA > SRR3722129.871987/1‑149 (MQ=60)
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CACTTTTTGCTGATTGTCGTAATAAGAGAAAGGCACTGAAGATTCACGGTGACCGACGACAATCACACCGTTTTTGGCGATTTTGTCCAGAGTACTGCCCGCTGCCGGGGCGGCGTCATCTGCCTGTGCCAGTCCTGCGGAAAGCGCCAGGGCGAGGATTGCTGTGGCAGGTTTACGTAATTGCATATCCAACTCCTTTATCTTCTGCGTTAAGAACGCATGGATACCCGTTGTGAGTGTTTGTGTTGTTATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGA > NZ_CP009273/683018‑683309
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
