Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F5 I175 R1
|
328 |
64.7 |
2582366 |
96.2% |
2484236 |
120.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
714,441 |
A→T |
D492E (GAT→GAA) |
speF ← |
ornithine decarboxylase SpeF |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 714,441 | 0 | A | T | 96.8%
| 246.7
/ ‑0.4
| 63 | D492E (GAT→GAA) | speF | ornithine decarboxylase SpeF |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base T (28/33); total (29/34) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.03e-01 |
TTAAGATCGCATTTTTCCGGCACTACGCCATTTTCGCGCAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGATCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGCCAGGGTTTACCATCCACCAG > NZ_CP009273/714307‑714572
|
ttAAGATCGCATTTTTCCGGCACTACGCCATTTTCGCGCAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGa < 2:734429/139‑1 (MQ=255)
aGATCGCATTTTTCCGGCACTACGCCATTTTCGCGCAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACaa < 2:1181934/139‑1 (MQ=255)
aGATCGCATTTTTCCGGCACTACGCCATTTTCGCGCAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGATCGACa > 1:721488/1‑138 (MQ=255)
gCATTTTTCCGGCACTACGCCATTTTCGCGCAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACa < 2:1248553/133‑1 (MQ=255)
gCATTTTTCCGGCACTACGCCATTTTCGCGCAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACa > 1:1248553/1‑133 (MQ=255)
gCATTTTTCCGGCACTACGCCATTTTCGCGCAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTAt > 1:1063150/1‑139 (MQ=255)
gCATTTTTCCGGCACTACGCCATTTTCGCGCAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTAt > 1:1158762/1‑139 (MQ=255)
cATTTTTCCGGCACTACGCCATTTTCGCGCAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTAtt > 2:1255027/1‑139 (MQ=255)
aTTTTTCCGGCACTACGCCATTTTCGCGCAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTg < 1:1264216/139‑1 (MQ=255)
tttCCGGCACTACGCCATTTTCGCGCAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGAt < 2:134283/138‑1 (MQ=255)
ttCCGGCACTACGCCATTTTCGCGCAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGAtt < 1:1279178/138‑1 (MQ=255)
cTACGCCATTTTCGCGCAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATa < 2:190168/139‑1 (MQ=255)
cTACGCCATTTTCGCGCAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATa < 1:645246/139‑1 (MQ=255)
cGCCATTTTCGCGCAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGcc > 2:896718/1‑139 (MQ=255)
ttttCGCGCAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCCTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCa > 2:477409/1‑138 (MQ=255)
tCGCGCAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCaaaa < 2:69385/138‑1 (MQ=255)
cgcAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAAt > 2:461331/1‑139 (MQ=255)
cAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGc < 1:1259578/139‑1 (MQ=255)
aGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGcc < 2:743576/139‑1 (MQ=255)
tAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTc > 2:114862/1‑139 (MQ=255)
aTCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTa < 1:748198/139‑1 (MQ=255)
tcgtcgCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGATCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTAc < 2:721488/139‑1 (MQ=255)
tcgCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACaa < 1:571637/84‑1 (MQ=255)
tcgCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACaa > 2:571637/1‑84 (MQ=255)
aaCGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGACTGCCAGTGTTCCCCTGGTACAACCTGGAAGAAgcg > 2:228573/1‑137 (MQ=255)
aaCGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAgcg > 1:73766/1‑137 (MQ=255)
aaCGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAgcg > 2:874846/1‑137 (MQ=255)
aaCGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAgcg > 1:571389/1‑137 (MQ=255)
aaCGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAgcg > 1:419835/1‑137 (MQ=255)
ccGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAAttt > 2:1255415/1‑139 (MQ=255)
ttACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTgcg < 1:461331/139‑1 (MQ=255)
ttACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTgcg < 2:73766/139‑1 (MQ=255)
ttACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTAGAAGAAGCGCAGATCAACCGCAATTTgcg < 2:296579/139‑1 (MQ=255)
aCGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTgcgc < 2:1264409/138‑1 (MQ=255)
aTCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCa > 1:656343/1‑139 (MQ=255)
aTACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACg < 1:1189534/139‑1 (MQ=255)
ggggTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGc > 1:973239/1‑138 (MQ=255)
gggTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATa < 2:149616/52‑1 (MQ=255)
gggTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATa > 1:149616/1‑52 (MQ=255)
gggTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGcc < 1:305244/138‑1 (MQ=255)
gggTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGcc < 2:695656/138‑1 (MQ=255)
gggTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGCCa < 1:896718/139‑1 (MQ=255)
gggTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGCCa < 1:774105/139‑1 (MQ=255)
gggTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGCCa < 2:419835/139‑1 (MQ=255)
ttGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGCCAggg > 2:193654/1‑139 (MQ=255)
tGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACt < 2:1115017/86‑1 (MQ=255)
tGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACt > 1:1115017/1‑86 (MQ=255)
gTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTgcg < 2:1052107/115‑1 (MQ=255)
gTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTgcg > 1:1052107/1‑115 (MQ=255)
gTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATAc < 1:1235952/126‑1 (MQ=255)
gTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATAc > 2:1235952/1‑126 (MQ=255)
gTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGCCAGGGtt > 1:62943/1‑139 (MQ=255)
tCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTcccc < 2:562277/73‑1 (MQ=255)
tCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTcccc > 1:562277/1‑73 (MQ=255)
cAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAgtgt < 1:319118/67‑1 (MQ=255)
cAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAgtgt > 2:319118/1‑67 (MQ=255)
aGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGCCAGGGTTTa < 1:114862/138‑1 (MQ=255)
aGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGCCAGGGTTTAc < 1:1255415/139‑1 (MQ=255)
cAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGCCAGGGTTTACCa < 2:216244/139‑1 (MQ=255)
gTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGCCAGGGTTTACCATccac < 2:973173/139‑1 (MQ=255)
tttGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGCCAGGGTTTACCATccac > 1:367391/1‑138 (MQ=255)
tttGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGCCAGGGTTTACCATccac > 1:869077/1‑138 (MQ=255)
tGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGCCAGGGTTTACCATCCACCAg > 1:679007/1‑139 (MQ=255)
|
TTAAGATCGCATTTTTCCGGCACTACGCCATTTTCGCGCAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGATCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGCCAGGGTTTACCATCCACCAG > NZ_CP009273/714307‑714572
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGAGGATGGAGTTAAGATCGCATTTTTCCGGCACTACGCCATTTTCGCGCAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGATCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGCCAGGGTTTACCATCCACCAGTTCAGGTACGAACGGAC > NZ_CP009273/714296‑714589
|
AGAGGATGGAGTTAAGATCGCATTTTTCCGGCACTACGCCATTTTCGCGCAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGAC < SRR3722129.708958/151‑1 (MQ=60)
AGGATGGAGTTAAGATCGCATTTTTCCGGCACTACGCCATTTTCGCGCAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAA < SRR3722129.950160/151‑1 (MQ=60)
GGATGGAGTTAAGATCGCATTTTTCCGGCACTACGCCATTTTCGCGCAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGATCGACAA > SRR3722129.732066/1‑150 (MQ=60)
GAGTTAAGATCGCATTTTTCCGGCACTACGCCATTTTCGCGCAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATT > SRR3722129.1078073/1‑151 (MQ=60)
GAGTTAAGATCGCATTTTTCCGGCACTACGCCATTTTCGCGCAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATT > SRR3722129.1265944/1‑151 (MQ=60)
GAGTTAAGATCGCATTTTTCCGGCACTACGCCATTTTCGCGCAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATT > SRR3722129.1174916/1‑151 (MQ=60)
gattcgccttagtctcgtgggctcggagatgtgtataagagacagAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTC < SRR3722129.580093/106‑1 (MQ=60)
CATTTTTCCGGCACTACGCCATTTTCGCGCAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCAT < SRR3722129.1281792/151‑1 (MQ=60)
TTTCCGGCACTACGCCATTTTCGCGCAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGC < SRR3722129.1296933/150‑1 (MQ=60)
ACTACGCCATTTTCGCGCAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAG < SRR3722129.654870/151‑1 (MQ=60)
GCAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCC < SRR3722129.1277092/151‑1 (MQ=60)
CAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAActgtctcttatacacatctccgagcccacgagactaaggcgaatctc > SRR3722129.127089/1‑104 (MQ=60)
cagaagacggcatacgacattcgccttagtctcgtgggctcggagatgtgtataagagacagCCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTAC < SRR3722129.323673/89‑1 (MQ=60)
AATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAG < SRR3722129.759123/151‑1 (MQ=60)
CGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGC > SRR3722129.74727/1‑149 (MQ=60)
CGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGC > SRR3722129.425950/1‑149 (MQ=60)
CGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGC > SRR3722129.579843/1‑149 (MQ=60)
CCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCAT > SRR3722129.666108/1‑151 (MQ=60)
GTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATAC < SRR3722129.468041/151‑1 (MQ=60)
CATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGCC > SRR3722129.987013/1‑150 (MQ=60)
ATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGctgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccgtcttctgcttgaaaaaaaaaa > SRR3722129.151706/1‑74 (MQ=60)
CAGTACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGCCAGGG < SRR3722129.1253117/151‑1 (MQ=60)
AATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGCCAGGGT < SRR3722129.1206083/151‑1 (MQ=60)
ATACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCctgtctcttatacacatctccgagcccacgagactaaggcga > SRR3722129.1130574/1‑108 (MQ=60)
TACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACctgtctcttatac > SRR3722129.1066874/1‑137 (MQ=60)
TACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGCCAGGGTTT > SRR3722129.63767/1‑151 (MQ=60)
ACCTGGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTctgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccgt > SRR3722129.570617/1‑95 (MQ=60)
GGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGCCAGGGTTTACCAT < SRR3722129.785335/151‑1 (MQ=60)
GGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGCCAGGGTTTACCAT < SRR3722129.909447/151‑1 (MQ=60)
GGGGTTGTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGCCAGGGTTTACCA < SRR3722129.309609/150‑1 (MQ=60)
GTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGCCAGGGTTTACCATCCACC > SRR3722129.881482/1‑150 (MQ=60)
GTCAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGCCAGGGTTTACCATCCACC > SRR3722129.372772/1‑150 (MQ=60)
CAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGCCAGGGTTTACCATCCACCAGT < SRR3722129.1272876/151‑1 (MQ=60)
CAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGCCAGGGTTTACCATCCACCAGT > SRR3722129.689049/1‑151 (MQ=60)
CAGCAACAGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGCCAGGGTTTACCATCCACCAG < SRR3722129.116440/150‑1 (MQ=60)
AGTTTGCATGGTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGCCAGGGTTTACCATCCACCAGTTCAGGT > SRR3722129.1205655/1‑150 (MQ=60)
GTTCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGCCAGGGTTTACCATCCACCAGTTCAGGTACtgtctctt > SRR3722129.577430/1‑142 (MQ=60)
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AGAGGATGGAGTTAAGATCGCATTTTTCCGGCACTACGCCATTTTCGCGCAGGAAGTTAGCAAGAATCGTCGCGGGTACACCGAACGCTTCATATTCGCCGTTACGTGCATCAATACCTGGGGTTGTCAGCAACAGTTTGCATGGATCGACAAAGTATTGATTCTCTGCATAGCCTTCAAAAGAATGCCAGTGTTCCCCTGGTACAAACTGGAAGAAGCGCAGATCAACCGCAATTTGCGCTGTTTCATACGACTGCCAGGGTTTACCATCCACCAGTTCAGGTACGAACGGAC > NZ_CP009273/714296‑714589
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
