Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F5 I175 R1
|
328 |
64.7 |
2582366 |
96.2% |
2484236 |
120.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
721,666 |
A→G |
V276A (GTC→GCC) |
kdpB ← |
potassium‑transporting ATPase subunit KdpB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 721,666 | 0 | A | G | 96.4%
| 183.8
/ ‑0.9
| 56 | V276A (GTC→GCC) | kdpB | potassium‑transporting ATPase subunit KdpB |
| Reads supporting (aligned to +/- strand): ref base A (0/2); new base G (23/31); total (23/33) |
| Fisher's exact test for biased strand distribution p-value = 5.07e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.27e-01 |
CGACGCCTGACGGTTACCGAGTGTGATGGTGCCGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGACGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGCG > NZ_CP009273/721533‑721780
|
cGACGCCTGACGGTTACCGAGTGTGATGGTGCCGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGcc > 1:748204/1‑138 (MQ=255)
cTGACGGTTACCGAGTGTGATGGTGCCGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCt < 1:96412/139‑1 (MQ=255)
tGACGGTTACCGAGTGTGATGGTGCCGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCt > 1:663733/1‑138 (MQ=255)
aCCGAGTGTGATGGTGCCGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAgg > 1:584988/1‑139 (MQ=255)
tgtgATGGTGCCGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGTCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAg < 2:436904/132‑1 (MQ=255)
tgtgATGGTGCCGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGTCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAg > 1:436904/1‑132 (MQ=255)
aTGGTGCCGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATa < 1:548274/138‑1 (MQ=255)
aTGGTGCCGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAg < 1:132278/139‑1 (MQ=255)
tGCCGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGt < 1:724898/139‑1 (MQ=255)
tGCCGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGt > 1:710094/1‑139 (MQ=255)
tGCCGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGt > 2:727200/1‑139 (MQ=255)
tGCCGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGt > 2:254477/1‑139 (MQ=255)
tGCCGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGACGCCGATCGCTGACAACAGGCCGCCAATAGTGGt < 1:1156321/139‑1 (MQ=255)
ccGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAg > 1:382860/1‑122 (MQ=255)
ccGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAg < 2:382860/122‑1 (MQ=255)
ccGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGgcc < 2:1280031/125‑1 (MQ=255)
ccGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGgcc > 1:1280031/1‑125 (MQ=255)
ccGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGt > 1:72958/1‑137 (MQ=255)
ccGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGt < 2:72958/137‑1 (MQ=255)
ccGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTg > 2:1134192/1‑139 (MQ=255)
ccGGATCTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATAACATTCCCGCCTATCCTCCGCCTCATCCCGGCCGCACCGATCGCAGCCAACCGTCCGCCATGAGTGGGTg > 2:993106/1‑139 (MQ=255)
ggTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTggg < 2:1057503/139‑1 (MQ=255)
ggTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTgg > 1:689204/1‑138 (MQ=255)
tCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATcaga < 1:727200/138‑1 (MQ=255)
tCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATcaga < 1:955143/138‑1 (MQ=255)
tCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATcaga < 2:584988/138‑1 (MQ=255)
tAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAg > 1:1247631/1‑108 (MQ=255)
tAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAg < 2:1247631/108‑1 (MQ=255)
gCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACca < 1:290267/138‑1 (MQ=255)
gAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATcaga > 2:359423/1‑128 (MQ=255)
gAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATcaga < 1:359423/128‑1 (MQ=255)
aacgtcaacgtcACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCagcagc < 2:873953/139‑1 (MQ=255)
aacgtcaacgtcACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGACGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCagcagc < 2:352717/139‑1 (MQ=255)
cgtcaCCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAg < 2:583777/139‑1 (MQ=255)
cTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCt < 2:710094/139‑1 (MQ=255)
cTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCt < 2:748204/139‑1 (MQ=255)
cTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCt < 2:948869/139‑1 (MQ=255)
cTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCt < 1:1044488/139‑1 (MQ=255)
cTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCt < 1:861301/139‑1 (MQ=255)
cAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGAc > 1:693677/1‑139 (MQ=255)
aCTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTg < 1:758522/139‑1 (MQ=255)
cACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCAt > 2:313226/1‑138 (MQ=255)
ccGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGc > 1:1275407/1‑139 (MQ=255)
gCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGccc < 1:79016/139‑1 (MQ=255)
cTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGccc > 2:77633/1‑138 (MQ=255)
gtggCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCAcg < 2:1238209/139‑1 (MQ=255)
aTCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGaa > 2:885196/1‑138 (MQ=255)
aTTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGc < 1:1162294/139‑1 (MQ=255)
cgcgCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCca < 1:313226/138‑1 (MQ=255)
cgcCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCca > 2:590981/1‑136 (MQ=255)
cgcCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCca < 1:590981/136‑1 (MQ=255)
ccTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGCg < 2:1275407/139‑1 (MQ=255)
cTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCca > 1:885027/1‑133 (MQ=255)
cTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCca < 2:885027/133‑1 (MQ=255)
gCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCt > 1:61075/1‑90 (MQ=255)
gCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCt < 2:61075/90‑1 (MQ=255)
|
CGACGCCTGACGGTTACCGAGTGTGATGGTGCCGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGACGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGCG > NZ_CP009273/721533‑721780
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGGATAAACTCCGACGCCTGACGGTTACCGAGTGTGATGGTGCCGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGACGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGCGTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGC > NZ_CP009273/721522‑721814
|
GGGATAAACTCCGACGCCTGACGGTTACCGAGTGTGATGGTGCCGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCG > SRR3722129.759129/1‑150 (MQ=60)
ACTCCGACGCCTGACGGTTACCGAGTGTGATGGTGCCGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTG > SRR3722129.673574/1‑150 (MQ=60)
GCCTGACGGTTACCGAGTGTGATGGTGCCGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGC > SRR3722129.593632/1‑151 (MQ=60)
CCTGACGGTTACCGAGTGTGATGGTGCCGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCC < SRR3722129.97718/151‑1 (MQ=60)
CGGTTACCGAGTGTGATGGTGCCGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGTCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCA > SRR3722129.443243/1‑150 (MQ=60)
GAGTGTGATGGTGCCGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTT > SRR3722129.720530/1‑151 (MQ=60)
GTGTGATGGTGCCGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGctgtctc > SRR3722129.388452/1‑144 (MQ=60)
GTGTGATGGTGCCGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGctgt > SRR3722129.1297795/1‑147 (MQ=60)
GTGTGATGGTGCCGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGG > SRR3722129.73908/1‑151 (MQ=60)
GTGATGGTGCCGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGG > SRR3722129.699374/1‑150 (MQ=60)
GATGGTGCCGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATC < SRR3722129.134064/151‑1 (MQ=60)
GATGGTGCCGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGAT < SRR3722129.556343/150‑1 (MQ=60)
GTGCCGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGAC < SRR3722129.735519/151‑1 (MQ=60)
GTGCCGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGACGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGAC < SRR3722129.1172455/151‑1 (MQ=60)
GTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGctgtctcttatacacatctcc > SRR3722129.1265015/1‑130 (MQ=60)
GATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAG < SRR3722129.364604/151‑1 (MQ=60)
ATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAG < SRR3722129.968638/150‑1 (MQ=60)
ATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAG < SRR3722129.737847/150‑1 (MQ=60)
AGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACC < SRR3722129.294432/150‑1 (MQ=60)
ACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACT > SRR3722129.703921/1‑151 (MQ=60)
GCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTAC < SRR3722129.1059158/151‑1 (MQ=60)
GCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTAC < SRR3722129.873575/151‑1 (MQ=60)
CAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCC > SRR3722129.1293118/1‑151 (MQ=60)
AACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCC < SRR3722129.769570/151‑1 (MQ=60)
CGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAA < SRR3722129.80047/151‑1 (MQ=60)
CACATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGCGTG > SRR3722129.897632/1‑151 (MQ=60)
CATTCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGCGTGGC < SRR3722129.1178505/151‑1 (MQ=60)
TCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGCGTGGCGG < SRR3722129.599718/150‑1 (MQ=60)
TCGCGCCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGCGTGGCGG < SRR3722129.317700/150‑1 (MQ=60)
CCTAGCATCCGGCTCATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCtgtctcttatacacatctccgagcccacgagactaagg > SRR3722129.61884/1‑113 (MQ=60)
CATCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGCGTGGCGGTTGCCAGTAAAAAGACGAT > SRR3722129.980575/1‑150 (MQ=60)
TCCCGGCGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGG‑AAACGGCCACAGCGTGGCGGTTGGCAGGAAAAAGAagaaaggc > SRR3722129.285534/1‑143 (MQ=60)
CGGCGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGCGTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGC < SRR3722129.552670/151‑1 (MQ=60)
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GGGATAAACTCCGACGCCTGACGGTTACCGAGTGTGATGGTGCCGGTTTTATCCAGTAGCAGAACGTCAACGTCACCTGCCGCTTCAACTGCACGTCCGCTGGTGGCAATCACATTCGCGCCTAGCATCCGGCTCATCCCGGCGACGCCGATCGCTGACAACAGGCCGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGCGTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGC > NZ_CP009273/721522‑721814
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
