Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F5 I175 R1
|
328 |
64.7 |
2582366 |
96.2% |
2484236 |
120.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
883,821 |
C→T |
V485V (GTG→GTA) |
ybjL ← |
aspartate:alanine antiporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 883,821 | 0 | C | T | 97.0%
| 222.1
/ ‑2.3
| 68 | V485V (GTG→GTA) | ybjL | aspartate:alanine antiporter |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (32/33); total (33/35) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.18e-01 |
GGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGCACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCGAACTCTTTCACCATGC > NZ_CP009273/883685‑883951
|
ggATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTAc > 1:969348/1‑139 (MQ=255)
aTGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCTCGGGTACCa < 2:42938/139‑1 (MQ=255)
ttACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGa < 1:1279608/138‑1 (MQ=255)
cGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGAcaa > 2:294798/1‑139 (MQ=255)
gAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGAcaat < 1:294798/139‑1 (MQ=255)
cTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGAcaatcaa > 2:247392/1‑139 (MQ=255)
tGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACt > 2:826964/1‑129 (MQ=255)
tGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACt < 1:826964/129‑1 (MQ=255)
tATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACaatcaatc < 2:950755/138‑1 (MQ=255)
tATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTACGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATcc > 2:980985/1‑139 (MQ=255)
tCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCgg < 1:114284/139‑1 (MQ=255)
gatCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCaa > 1:1020670/1‑138 (MQ=255)
gatCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCaa > 1:1140465/1‑138 (MQ=255)
gatCTCCATTGCCCGCGCGCAGGTAGGTGCGCCCCTCATCGCGCCGAACAACAGCGCGCGGTTCTTTCGCTATACATAAGCACCGAACAAGAACCAGATAATCACGGGTACCAGACTGACAATCAATCCGGCAATCaa > 2:894488/1‑138 (MQ=255)
ctcCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGCACCAGACTGACAATCAATCCGGCAATCAACATc > 1:868822/1‑139 (MQ=255)
tcCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGTACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCt > 2:558910/1‑139 (MQ=255)
cATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGa > 1:141987/1‑139 (MQ=255)
ttGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGAcc > 2:978713/1‑139 (MQ=255)
ttGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGAcc < 1:276302/139‑1 (MQ=255)
ttGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGAcc > 2:843922/1‑139 (MQ=255)
ccGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTAc < 1:1058726/100‑1 (MQ=255)
ccGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTAc > 2:1058726/1‑100 (MQ=255)
gcgcgcAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCCCCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAAt < 1:1100848/139‑1 (MQ=255)
gcgcgcAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAAt < 1:441005/139‑1 (MQ=255)
cgcgcAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATc < 1:682468/139‑1 (MQ=255)
aGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGcc < 2:141987/139‑1 (MQ=255)
cGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATACCCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAgg < 2:845797/138‑1 (MQ=255)
cGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAgg < 1:247392/138‑1 (MQ=255)
cGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAgg < 1:843922/138‑1 (MQ=255)
cGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAgg < 1:205714/138‑1 (MQ=255)
gcgcCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGt < 2:562483/139‑1 (MQ=255)
atcatTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCgg > 2:768149/1‑97 (MQ=255)
atcatTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCgg < 1:768149/97‑1 (MQ=255)
cGAACAAAAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTAcc < 2:546821/139‑1 (MQ=255)
gAACAACAGCGCGCGGTTCATTCGCAATACAGAAGCACCGAACAAGAAACATATAACCTCGAGTACCAGACTGCCAATCAATCCGCCAAGCAACTTCTGCCCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCg < 2:1151470/139‑1 (MQ=255)
aacaacAGCGCGCGGTTCATTCGCGATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCgg > 1:712109/1‑139 (MQ=255)
acaGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGCACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCt < 2:868822/139‑1 (MQ=255)
caGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCt > 2:178875/1‑138 (MQ=255)
gcgcgGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGTTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGAc < 2:676493/139‑1 (MQ=255)
cgcgGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGAc > 1:91379/1‑138 (MQ=255)
ttCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGc < 2:1177160/139‑1 (MQ=255)
ttCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGc < 1:1204239/139‑1 (MQ=255)
cATAAGCCCCAAACAAAAAACAGAAACCCACGGGTACAAGACTGACAATCAACCCGCCAATCAACATCTGCCCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAaca < 2:1000246/138‑1 (MQ=255)
aGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCAt < 1:801245/138‑1 (MQ=255)
ccGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGc > 2:367140/1‑139 (MQ=255)
ccGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGc > 1:1000246/1‑139 (MQ=255)
ccGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGc > 1:221811/1‑139 (MQ=255)
ccGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGc > 1:386341/1‑139 (MQ=255)
gAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGcc > 2:806791/1‑138 (MQ=255)
gAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGcc > 2:862357/1‑138 (MQ=255)
gAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCg < 1:1052439/139‑1 (MQ=255)
aaCAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATc < 2:390819/69‑1 (MQ=255)
aaCAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATc > 1:390819/1‑69 (MQ=255)
aaCAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGcc < 1:904422/80‑1 (MQ=255)
aaCAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGcc > 2:904422/1‑80 (MQ=255)
aaCAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCg > 1:1186173/1‑138 (MQ=255)
aaCAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCg > 2:75293/1‑138 (MQ=255)
aaCAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGCCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCg > 1:414061/1‑138 (MQ=255)
aCAAGAAACAGATAACCACGGTTACCAGACTGACAATCAATCCGGCAATCAACATCGGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCGaa < 1:862357/139‑1 (MQ=255)
aCAAGAAACAAACAACCCCGGGAACAGGCCGGACAAAAAACCCGCAAACCAACATCGGCCCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCGaa < 2:414061/139‑1 (MQ=255)
gATAACCACGGGTACCAGACTGAAAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCGAACTCTTTCAcc < 1:367140/139‑1 (MQ=255)
aTAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGc > 1:971533/1‑67 (MQ=255)
aTAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGc < 2:971533/67‑1 (MQ=255)
aTAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTAACGGCGCTCAGCCCAACGCCTGCCATAAACACCATCAAGCCGAACTCTTTCACCa > 2:1146900/1‑139 (MQ=255)
aCCACGGTTCCCAGACTGACAATAAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCGAACTCTTTCACCATGc < 2:836962/139‑1 (MQ=255)
aCCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCGAACTCTTTCACCATGc > 1:836962/1‑139 (MQ=255)
cGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCaa < 2:893615/93‑1 (MQ=255)
cGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCaa > 1:893615/1‑93 (MQ=255)
|
GGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGCACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCGAACTCTTTCACCATGC > NZ_CP009273/883685‑883951
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGCACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCGAACTCTTTCACCATGCTTAATGCACCCTGCGGAAT > NZ_CP009273/883674‑883970
|
GCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACC > SRR3722129.983068/1‑151 (MQ=60)
CCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAG < SRR3722129.645646/151‑1 (MQ=60)
AGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGAC < SRR3722129.571278/151‑1 (MQ=60)
gctaatgacttatttttttattgttgtttgtttttttttttcaagcagaagacggcatacgatattcgccttagtctcgtgggctcggagatgtgtataagagacagACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGAC < SRR3722129.794879/43‑1 (MQ=60)
gtgggctcggagatgtgtataagagacagGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAA < SRR3722129.1073603/122‑1 (MQ=60)
GTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAA < SRR3722129.1297367/150‑1 (MQ=60)
TACAGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATC < SRR3722129.838849/150‑1 (MQ=60)
CGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAA < SRR3722129.299022/151‑1 (MQ=60)
GTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAAC > SRR3722129.1156329/1‑150 (MQ=60)
GTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAAC > SRR3722129.1035067/1‑150 (MQ=60)
ATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATC < SRR3722129.115853/151‑1 (MQ=60)
TCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGCACCAGACTGACAATCAATCCGGCAATCAACATCT > SRR3722129.881226/1‑151 (MQ=60)
cgtgggctcggagatgtgtataagagacaGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATC < SRR3722129.779317/120‑1 (MQ=60)
CTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGAC > SRR3722129.143977/1‑151 (MQ=60)
ATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGC < SRR3722129.280269/151‑1 (MQ=60)
GGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCCCCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGC < SRR3722129.1116197/151‑1 (MQ=60)
GGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGC < SRR3722129.447403/151‑1 (MQ=60)
GCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCC < SRR3722129.692543/151‑1 (MQ=60)
ACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAAT < SRR3722129.208586/150‑1 (MQ=60)
ACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAAT < SRR3722129.856010/150‑1 (MQ=60)
ACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAAT < SRR3722129.250898/150‑1 (MQ=60)
acgagattcgccttagtctcgtgggctcggagatgtgtataagagacagCATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATAC < SRR3722129.917243/102‑1 (MQ=60)
TCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCGATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGC > SRR3722129.722568/1‑151 (MQ=60)
TCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACctgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccgtcttctgcttgaaa > SRR3722129.567004/1‑81 (MQ=60)
GAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACC > SRR3722129.92581/1‑150 (MQ=60)
GTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAAC < SRR3722129.1221041/151‑1 (MQ=60)
ATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCC > SRR3722129.391988/1‑151 (MQ=60)
ATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCC > SRR3722129.224897/1‑151 (MQ=60)
ATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCC > SRR3722129.1014348/1‑151 (MQ=60)
CATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCctgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccgtcttc > SRR3722129.396518/1‑91 (MQ=60)
CATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCGA > SRR3722129.1202679/1‑150 (MQ=60)
CATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGCCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCGA > SRR3722129.420098/1‑150 (MQ=60)
AAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCGAACT < SRR3722129.812813/150‑1 (MQ=60)
CGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCGAACTCTTTCAC < SRR3722129.1067208/151‑1 (MQ=60)
AACAAGAAACAGATACCCACGGTTACCAGACTGACAATCAATCCGGCAATCAACATCGGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCGAACTCTTTCACCA < SRR3722129.874643/151‑1 (MQ=60)
AACAAGAAACAGATAACCACGGGTCCCAGACGGACAACCAATCCGGCAACCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCGAACTCTTTCACCA < SRR3722129.565483/151‑1 (MQ=60)
ACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACtgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccgtcttctg > SRR3722129.985282/1‑90 (MQ=60)
AGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCGAACTCTTTCACCATGCT > SRR3722129.848974/1‑151 (MQ=60)
ACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATActgtctcttatacacatctccgagcccacgagact > SRR3722129.906312/1‑115 (MQ=60)
AGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCGAACTCTTTCACCATGCTTAATGC > SRR3722129.200825/1‑151 (MQ=60)
AGATAACCACGGGTACCAGACTGAAAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCGAACTCTTTCACCATGCTTAATGC < SRR3722129.372521/151‑1 (MQ=60)
GTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCGAACTCTTTCACCATGCTTAATGCACCCTGCGGAAT > SRR3722129.779658/1‑151 (MQ=60)
GTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCGAACTCTTTCACCATGCTTAATGCACCCTGCGGAAT > SRR3722129.422837/1‑151 (MQ=60)
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GCCCAGCGCCGGGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGCACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCGAACTCTTTCACCATGCTTAATGCACCCTGCGGAAT > NZ_CP009273/883674‑883970
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
