Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F5 I175 R1
|
328 |
64.7 |
2582366 |
96.2% |
2484236 |
120.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
1,047,923 |
(T)5→4 |
coding (896/1074 nt) |
yccM ← |
4Fe‑4S binding protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 1,047,919 | 0 | T | . | 98.0%
| 217.9
/ ‑2.0
| 51 | coding (900/1074 nt) | yccM | 4Fe‑4S binding protein |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base . (27/23); total (27/24) |
| Fisher's exact test for biased strand distribution p-value = 4.71e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.76e-01 |
CGGTACAATTCCTCCGGCACCGGGCTTTGCCATACTCCCGCATACATTGCGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGGTTTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTGAATTAATTTATCGACCGGGATCCGTGATGGGCAATTTTTTGCG > NZ_CP009273/1047782‑1048048
|
cGGTACAATTCCTCCGGCACCGGGCTTTGCCATACTCCCGCATACATTGCGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGGtt > 2:475313/1‑139 (MQ=255)
ggCACCGGGCTTTGCCATACTCCCGCATACATTGCGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGt < 1:475313/139‑1 (MQ=255)
tGCCATACTCCCGCATACATTGCGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAgg < 2:234773/138‑1 (MQ=255)
gCATACATTGCGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGa > 1:7652/1‑139 (MQ=255)
tACATTGCGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGActc > 1:88161/1‑139 (MQ=255)
aTTGCGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGt > 2:795715/1‑109 (MQ=255)
aTTGCGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGt < 1:795715/109‑1 (MQ=255)
aTTGCGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTAc > 2:537445/1‑139 (MQ=255)
aTTGCGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTAc > 2:436360/1‑139 (MQ=255)
tGCGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTAc > 2:620321/1‑122 (MQ=255)
tGCGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTAc < 1:620321/122‑1 (MQ=255)
gCGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGc < 2:87779/138‑1 (MQ=255)
gCGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGc < 1:1164410/138‑1 (MQ=255)
cGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGc > 1:311732/1‑137 (MQ=255)
cGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGc > 1:878734/1‑137 (MQ=255)
gTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAg > 1:414490/1‑139 (MQ=255)
aCCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACa < 2:171516/122‑1 (MQ=255)
aCCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACa > 1:171516/1‑122 (MQ=255)
ccAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCAt < 2:1287984/139‑1 (MQ=255)
ccAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCAt < 1:977757/139‑1 (MQ=255)
aTCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATa > 1:1055844/1‑137 (MQ=255)
aTCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATa > 1:369363/1‑137 (MQ=255)
cAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTa > 1:1126376/1‑139 (MQ=255)
aaTCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATAGCTCTACGCAAGTCATACAGCCGGTACATTCCa < 2:797828/139‑1 (MQ=255)
aTCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTa < 1:1112546/96‑1 (MQ=255)
aTCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTa > 2:1112546/1‑96 (MQ=255)
aTCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCa < 2:1126376/138‑1 (MQ=255)
aTCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCa < 1:953174/138‑1 (MQ=255)
aTCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCa < 2:626295/138‑1 (MQ=255)
aTCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCAc > 2:534742/1‑139 (MQ=255)
cAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTc > 2:489837/1‑139 (MQ=255)
gTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTGCCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTg > 1:1014128/1‑138 (MQ=255)
gTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACa < 1:18632/90‑1 (MQ=255)
gTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACa > 2:18632/1‑90 (MQ=255)
gTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTg > 2:1086156/1‑138 (MQ=255)
gTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTg > 1:643842/1‑138 (MQ=255)
aTTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGt < 2:1017158/109‑1 (MQ=255)
aTTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGt > 1:1017158/1‑109 (MQ=255)
aTTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTGaattaatt > 2:153901/1‑138 (MQ=255)
aaCCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTGAATTAATTTAt < 1:17463/138‑1 (MQ=255)
cagccagACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTGAATTAATTTATCGAc < 1:1086156/139‑1 (MQ=255)
cagccagACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTGAATTAATTTATCGAc < 1:903318/139‑1 (MQ=255)
agccagACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTGAATTAATTTATCGAcc < 2:7652/139‑1 (MQ=255)
agccagACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTGAATTAATTTATCGAcc < 1:534742/139‑1 (MQ=255)
gccagACAACGCAAAGGCTTTTTTATTTGCCGCAGGTTTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTGAATTAATTTATCGAcc < 2:252521/139‑1 (MQ=255)
gccagACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTGAATTAATTTATCGACCg > 2:446092/1‑139 (MQ=255)
gccagACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTGAATTAATTTATCGACCg < 2:414490/139‑1 (MQ=255)
ccagACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTGAATTAATTTATCGACCgg > 2:418766/1‑139 (MQ=255)
cGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTGAATTAATTTATCGACCGGGATCCGt > 1:399145/1‑138 (MQ=255)
ttGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTGAATTAATTTATCGACCGGGATCCGTGATGGGCAATTTTTTgcg > 1:836704/1‑139 (MQ=255)
tGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTGAATTAATTTATCGACCgg < 1:1236207/113‑1 (MQ=255)
tGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTGAATTAATTTATCGACCgg > 2:1236207/1‑113 (MQ=255)
|
CGGTACAATTCCTCCGGCACCGGGCTTTGCCATACTCCCGCATACATTGCGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGGTTTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTGAATTAATTTATCGACCGGGATCCGTGATGGGCAATTTTTTGCG > NZ_CP009273/1047782‑1048048
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AAGCGTCGGTACAATTCCTCCGGCACCGGGCTTTGCCATACTCCCGCATACATTGCGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGGTTTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTGAATTAATTTATCGACCGGGATCCGTGATGGGCAATTTTTTGCGCATTTGCCACAGTCGATAC > NZ_CP009273/1047776‑1048067
|
AAGCGTCGGTACAATTCCTCCGGCACCGGGCTTTGCCATACTCCCGCATACATTGCGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAG < SRR3722129.582187/151‑1 (MQ=60)
gagatgtgtataagagacagCTCCCGCATACATTGCGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGG < SRR3722129.807230/131‑1 (MQ=60)
CGGCACCGGGCTTTGCCATCCTCCCGCATACATTGCGTAACCAATCACCGCAAACATCATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGG < SRR3722129.463983/151‑1 (MQ=60)
CGGCACCGGGCTTTGCCATACTCCCGCATACATTGCGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGG < SRR3722129.482202/151‑1 (MQ=60)
GCCATACTCCCGCATACATTGCGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGAC > SRR3722129.7752/1‑151 (MQ=60)
gagacagCCCGCATACATTGCGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACT < SRR3722129.629542/144‑1 (MQ=60)
cgtgggctcggagatgtgtataagagacagCCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGAC < SRR3722129.1128077/118‑1 (MQ=60)
ATACTCCCGCATACATTGCGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCT > SRR3722129.89306/1‑151 (MQ=60)
ccttagtctcgtgggctcggagatgtgtataagagacagCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGC < SRR3722129.18852/112‑1 (MQ=60)
CGCATACATTGCGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCA > SRR3722129.891264/1‑149 (MQ=60)
CGCATACATTGCGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCA > SRR3722129.316188/1‑149 (MQ=60)
GCATACATTGCGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGT > SRR3722129.420533/1‑151 (MQ=60)
TACATTGCGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCctgtctc > SRR3722129.173878/1‑144 (MQ=60)
TTGCGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATAC > SRR3722129.1070692/1‑149 (MQ=60)
TTGCGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATAC > SRR3722129.374773/1‑149 (MQ=60)
TGCGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAGGTCATACAG < SRR3722129.1180649/150‑1 (MQ=60)
ACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTAC < SRR3722129.991592/151‑1 (MQ=60)
ACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTAC > SRR3722129.1142073/1‑151 (MQ=60)
AACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCctgtctcttatacacatctccgagcccacgagact > SRR3722129.557816/1‑115 (MQ=60)
AATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACC < SRR3722129.966645/150‑1 (MQ=60)
CCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTGCCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTGA > SRR3722129.1028445/1‑150 (MQ=60)
CCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTGA > SRR3722129.653442/1‑150 (MQ=60)
CCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGctgtctcttatacacatctc > SRR3722129.1031518/1‑131 (MQ=60)
TAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTGAATTAATTTATCGACCGGGATC < SRR3722129.17670/150‑1 (MQ=60)
CCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTGAATTAATTTATCGACCGGGATCCGTG < SRR3722129.1101357/151‑1 (MQ=60)
CCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTGAATTAATTTATCGACCGGGATCCGTG < SRR3722129.916125/151‑1 (MQ=60)
CAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTGAATTAATTTATCGACCGGGATCCGTGA < SRR3722129.542555/151‑1 (MQ=60)
CAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTGAATTAATTTATCGACCGGGATCCGTG > SRR3722129.404949/1‑150 (MQ=60)
gtgtataagagacAGGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTGAATTAATTTATCGACCGGGATCCGTGATG < SRR3722129.1253375/137‑1 (MQ=60)
GGCTTTTTTATTTGCCGCAGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTGAATTAATTTATCGACCGGGATCCGTGATGGGCAATTTTTTGCGC > SRR3722129.848713/1‑151 (MQ=60)
AGG‑TTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTGAATTAATTTATCGACCGGGATCCGTGATGGGCAATTTTTTGCGCATTTGCCACAGTCGATAC < SRR3722129.156054/151‑1 (MQ=60)
GGTTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTGAATTAATTTATCGACCGGGATCCGTGATGGGCAATTTTTTGCGCATTTGCCACAGTCGATAC > SRR3722129.1175580/1‑150 (MQ=60)
|
AAGCGTCGGTACAATTCCTCCGGCACCGGGCTTTGCCATACTCCCGCATACATTGCGTAACCAATCACCGCAAACATAATCCCCAGAACCAGTAGCGTCATTAACCAGCCAGACAACGCAAAGGCTTTTTTATTTGCCGCAGGTTTTTGCAGTGAAAAGGTCAATGTTGAGGCTACCGGACATGACTCTACGCAAGTCATACAGCCGGTACATTCCACTGTTCGTACCTGAATTAATTTATCGACCGGGATCCGTGATGGGCAATTTTTTGCGCATTTGCCACAGTCGATAC > NZ_CP009273/1047776‑1048067
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
