Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F5 I175 R1
|
328 |
64.7 |
2582366 |
96.2% |
2484236 |
120.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
1,049,216 |
A→G |
S807P (TCG→CCG) |
torS ← |
TMAO reductase system sensor histidine kinase/response regulator TorS |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 1,049,216 | 0 | A | G | 100.0%
| 144.2
/ NA
| 41 | S807P (TCG→CCG) | torS | TMAO reductase system sensor histidine kinase/response regulator TorS |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (20/21); total (20/21) |
CGCGGGCAATGTCGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGATTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCACCGGTTTAGGGATAATCCCGCGGAATAATGAACTGGTACGCTGGCGCAGCGTTTCGTCAATGACATG > NZ_CP009273/1049093‑1049348
|
cgcgGGCAATGTCGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTTTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGAc > 1:145403/1‑139 (MQ=255)
cgcgGGCAATGTCGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGAc > 1:335430/1‑139 (MQ=255)
gcgGGCAATGTCGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACt < 1:1126036/139‑1 (MQ=255)
gggCAATGTCGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTg < 2:829893/139‑1 (MQ=255)
gggCAATGTCGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTg < 1:281471/139‑1 (MQ=255)
gggCAATGTCGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTg < 1:1262034/139‑1 (MQ=255)
gCAATGTCGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTTTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCa < 2:145403/139‑1 (MQ=255)
aTCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGtt < 2:439432/107‑1 (MQ=255)
aTCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGtt > 1:439432/1‑107 (MQ=255)
gagaAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTgcgc < 2:511807/138‑1 (MQ=255)
cGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAAc < 1:501991/139‑1 (MQ=255)
ggCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGt > 2:501483/1‑122 (MQ=255)
ggCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGt < 1:501483/122‑1 (MQ=255)
cATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAg > 2:293479/1‑139 (MQ=255)
gtAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCAc > 1:574387/1‑139 (MQ=255)
tAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCAcg > 1:415481/1‑139 (MQ=255)
ataCCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCAc < 1:269390/139‑1 (MQ=255)
ataCCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCAc < 2:574387/139‑1 (MQ=255)
ataCCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCAc < 1:33279/139‑1 (MQ=255)
taCCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGAt < 2:871323/77‑1 (MQ=255)
taCCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGAt > 1:871323/1‑77 (MQ=255)
taCCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCAcc > 2:240581/1‑139 (MQ=255)
aCCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTg > 1:194842/1‑89 (MQ=255)
aCCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTg < 2:194842/89‑1 (MQ=255)
ctcCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCACCGGTTTAGGGATAATCCcgcg < 1:240581/138‑1 (MQ=255)
cccATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCACCGGTTTAGGGATAATCCCGCGGAATAATg < 1:1007941/139‑1 (MQ=255)
cTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTgcgc > 2:1205901/1‑72 (MQ=255)
cTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTgcgc < 1:1205901/72‑1 (MQ=255)
gAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTCGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCACCGGTTTAGGGATAATCCCGCGGAATAATGACCTGGTACg > 2:603308/1‑139 (MQ=255)
aGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCAc < 2:165265/99‑1 (MQ=255)
aGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCAc > 1:165265/1‑99 (MQ=255)
aGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCACCGGTTTAGGGATAATCCCGCGGAATAATGAACTGGTACGc > 2:353095/1‑139 (MQ=255)
aGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCACCGGTTTAGGGATAATCCCGCGGAATAATGAACTGGTACGc > 2:878766/1‑139 (MQ=255)
gCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTGAAGCGGCACCGGATTAGGGATAATCCCGCGGAATAATGAAGTGGCACGCt > 2:960743/1‑139 (MQ=255)
cTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAg > 1:327825/1‑79 (MQ=255)
cTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAg < 2:327825/79‑1 (MQ=255)
ttGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCACCGGTTTAGGGATAATCCCGCGGAATAATGAACTGGTACGCTGGCGCAGCGTTTCg > 2:1059702/1‑139 (MQ=255)
cGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCAc > 2:1214377/1‑81 (MQ=255)
cGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCAc < 1:1214377/81‑1 (MQ=255)
cATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCACCGGTTTAGGGATAATCCCGCGGAATAATGAACTGGTACGCTGGCGCAGCGTTTCGTCAATGa > 1:1244601/1‑138 (MQ=255)
cAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGAGGCACCGGTTTAGGGATAATCCCGCGGAATAATGAACTGGTACGCTGGCGCAGCGTTTCGTCAATGACATg < 2:440565/138‑1 (MQ=255)
|
CGCGGGCAATGTCGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGATTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCACCGGTTTAGGGATAATCCCGCGGAATAATGAACTGGTACGCTGGCGCAGCGTTTCGTCAATGACATG > NZ_CP009273/1049093‑1049348
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCTTTATTTTCTCGCTATCCTGACTGGCGCGGGCAATGTCGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGATTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCACCGGTTTAGGGATAATCCCGCGGAATAATGAACTGGTACGCTGGCGCAGCGTTTCGTCAATGACATGGGCGCTAAAGCCAATCA > NZ_CP009273/1049066‑1049365
|
ataagagacagTCGCTATCCTGACTGGCGCGGGCAATGTCGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGG < SRR3722129.662629/140‑1 (MQ=60)
agaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagaCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGG < SRR3722129.387164/93‑1 (MQ=60)
tttttttcaagcagaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGT < SRR3722129.978319/77‑1 (MQ=60)
ATTTTCTCGCTATCCTGACTGGCGCGGGCAATGTCGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGAT < SRR3722129.33902/151‑1 (MQ=60)
ATCCTGACTGGCGCGGGCAATGTCGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTTTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACT > SRR3722129.147434/1‑151 (MQ=60)
ATCCTGACTGGCGCGGGCAATGTCGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACT > SRR3722129.340267/1‑151 (MQ=60)
CGCGGGCAATGTCGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAG < SRR3722129.1141731/151‑1 (MQ=60)
CGGGCAATGTCGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGAT < SRR3722129.285513/151‑1 (MQ=60)
CGGGCAATGTCGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGAT < SRR3722129.1279575/151‑1 (MQ=60)
ATGTCGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGctgtctcttatacacatctccg > SRR3722129.445807/1‑129 (MQ=60)
gagacaGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAAC < SRR3722129.508736/145‑1 (MQ=60)
gacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGAC < SRR3722129.1222721/94‑1 (MQ=60)
GCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCAC < SRR3722129.509257/151‑1 (MQ=60)
GGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACG > SRR3722129.582885/1‑151 (MQ=60)
GGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGC > SRR3722129.421537/1‑151 (MQ=60)
TGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTctgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatg > SRR3722129.883761/1‑99 (MQ=60)
GTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATctgtctcttatacacatctccgagcccacgagactaaggc > SRR3722129.197559/1‑111 (MQ=60)
cgagattcgccttagtctcgtgggctcggagatgtgtataagagacagTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCACCGGTTTAGGGA < SRR3722129.1231300/103‑1 (MQ=60)
AATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCACCGGTTTAGGGA < SRR3722129.273202/151‑1 (MQ=60)
AATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCACCGGTTTAGGGA < SRR3722129.33688/151‑1 (MQ=60)
agattcgccttagtctcgtgggctcggagatgtgtataagagacagATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCACCGGTTTAGGGATAATCCCGCGGAATAATGA < SRR3722129.431358/105‑1 (MQ=60)
TCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCACCGGTTTAGGGATAATCCCGCGGAATAATGAAC < SRR3722129.243999/150‑1 (MQ=60)
CCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCACCGGTTTAGGGATAATCCCGCGGAATAATGAACTGGTACGC < SRR3722129.1022177/151‑1 (MQ=60)
CCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCACCGGTTTAGGGActgtctcttatacacatctccgagcccacg > SRR3722129.167554/1‑121 (MQ=60)
TAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGctgtctcttatacacatctccgagcccacgagactaaggcgaatctcgt > SRR3722129.332560/1‑101 (MQ=60)
GAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCACCGGTTTAGGGATAATCCCGCGGAATAATGAACTGGTACGCTGGCGCAGCGTTTCGTCAATGAC > SRR3722129.1261947/1‑150 (MQ=60)
CATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCtgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccgtcttctgcttgaaaaaaaaaaaaagaaaaaatgaaaaac > SRR3722129.329026/1‑58 (MQ=60)
CATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAG > SRR3722129.821637/1‑49 (MQ=60)
GATTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCtgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccgtcttctgcttgaaaaaaaaaaaaaaaaaacaacatcaaaaccaaaac > SRR3722129.254822/1‑50 (MQ=60)
GTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCACCGGTTTAGGGATAATCCCGCGGAATAATGAACTGGTACGCTGGCGCAGCGTTTCGTCAATGACATGGGCGCTAAAGCCAATCA > SRR3722129.227032/1‑150 (MQ=60)
|
GCTTTATTTTCTCGCTATCCTGACTGGCGCGGGCAATGTCGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGATTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCACCGGTTTAGGGATAATCCCGCGGAATAATGAACTGGTACGCTGGCGCAGCGTTTCGTCAATGACATGGGCGCTAAAGCCAATCA > NZ_CP009273/1049066‑1049365
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
