Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
343 |
268.7 |
10873516 |
97.0% |
10547310 |
150.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
CP009974 |
2,509,653 |
Δ2,602 bp |
|
RPPX_11210–[RPPX_11220] |
RPPX_11210, RPPX_11215, [RPPX_11220] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
CP009974 |
2509653–2512248 |
2512254 |
7–2602 |
280 [4] |
[0] 277 |
RPPX_11210–[RPPX_11220] |
RPPX_11210,RPPX_11215,[RPPX_11220] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
CP009974 |
= 2509652 | 4 (0.010) | 270 (1.030) |
161/288 |
0.2 |
99.3% |
intergenic (+3590/‑204) |
RPPX_11200/RPPX_11210 |
beta‑aspartyl peptidase/integrase |
| ? | CP009974 |
2512255 = |
0 (0.000) | coding (24/1236 nt) |
RPPX_11220 |
hypothetical protein |
GATK/CNVnator alignment
N/A
