Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I1 R1
|
404 |
265.1 |
10478538 |
96.8% |
10143224 |
150.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
CP009974 |
2,509,653 |
Δ2,602 bp |
|
RPPX_11210–[RPPX_11220] |
RPPX_11210, RPPX_11215, [RPPX_11220] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
CP009974 |
2509653–2512249 |
2512254 |
6–2602 |
277 [0] |
[0] 275 |
RPPX_11210–[RPPX_11220] |
RPPX_11210,RPPX_11215,[RPPX_11220] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
CP009974 |
= 2509652 | 0 (0.000) | 266 (1.050) |
171/288 |
0.0 |
100% |
intergenic (+3590/‑204) |
RPPX_11200/RPPX_11210 |
beta‑aspartyl peptidase/integrase |
| ? | CP009974 |
2512255 = |
0 (0.000) | coding (24/1236 nt) |
RPPX_11220 |
hypothetical protein |
GATK/CNVnator alignment
N/A
