Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 343 268.7 10873516 97.0% 10547310 150.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP009974 2,910,258 A→G intergenic (+162/‑497) gudD → / → RPPX_12965 glucarate dehydratase/GABA permease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0099742,910,2580AG88.5% 1012.4 / 96.9 459intergenic (+162/‑497)gudD/RPPX_12965glucarate dehydratase/GABA permease
Reads supporting (aligned to +/- strand):  ref base A (27/25);  new base G (159/240);  total (191/268)
Fisher's exact test for biased strand distribution p-value = 1.02e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 460 total aligned reads displayed.

TCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCATCGCCACGTACCGTT  >  CP009974/2910108‑2910405
                                                                                                                                                       |                                                                                                                                                   
tctTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCGCCCGTCAGTCCCCACCGCAC‑CCCCCAACTCACTCATCACTCGCCCCCa                                                                                                                                                     >  1:437045/1‑151 (MQ=21)
  cccgcgcgCACGCCCGCGCCTACATCAACCGGCGCCGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTc                                                                                                                                                   <  2:3131031/149‑1 (MQ=18)
       gggCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCAc                                                                                                                                              <  2:2263887/151‑1 (MQ=255)
         gCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACgt                                                                                                                                            >  2:1523918/1‑150 (MQ=255)
           aaGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCAc                                                                                                                                          >  1:3780742/1‑151 (MQ=255)
             gCCCGCTCCTACATCAACCGGTGGTGTCGCCCCTCACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGAACTGCCGCCCAATACCCTCAGTTATTCACCGCCGCAC‑CCGCCACCGCAATCATTAATCGGCACCGTCGCCACGGAccc                                                                                                                                        >  1:2255388/1‑151 (MQ=21)
             gCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCGC‑CCGCCACCGCAGTCATCAATCGGCACCGTCGCCacccaccc                                                                                                                                        >  2:5425428/1‑151 (MQ=25)
                    cattcATCAATCGGCGCCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAgg                                                                                                                                 <  2:2441377/147‑1 (MQ=14)
                     cTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGa                                                                                                                                >  1:56625/1‑151 (MQ=21)
                      ttcATCAACCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAg                                                                                                                               <  1:2677347/149‑1 (MQ=14)
                      tACATCAATCGGCACCGTCGCCCCGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAg                                                                                                                               <  2:4092270/151‑1 (MQ=14)
                                ggcaccgtCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCAcc                                                                                                                     <  1:322724/145‑1 (MQ=17)
                                     cgtCGCCCCGTTCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGa                                                                                                                <  2:3550533/150‑1 (MQ=21)
                                      gtCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGaa                                                                                                               <  2:1621387/151‑1 (MQ=21)
                                      gtCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCTCCTTGTAGGa                                                                                                                                >  1:5321536/1‑134 (MQ=18)
                                       tCGCCCCACCCCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTCGGAGCGGGTTCACCCGCGAAt                                                                                                              <  1:601292/151‑1 (MQ=21)
                                           ccgagagcGTTGTAGGGGGGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGGCGTTCACCGCCGCAC‑CCGCCACCGCATGCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGc                                                                                                          <  2:789226/144‑1 (MQ=21)
                                           cacgcacCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGCGCGGGTTCACCCGCGAATAGGc                                                                                                          >  1:4854016/5‑151 (MQ=18)
                                            ccACGCCGTCGGAGGAGCGGGTGCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCGC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGcc                                                                                                         <  2:3779981/151‑1 (MQ=21)
                                             cgttccGTTCTAGGAGCCGGCCCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCg                                                                                                        <  1:248601/147‑1 (MQ=21)
                                             cacaCCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCg                                                                                                        <  1:4952020/151‑1 (MQ=21)
                                             cacaCCGTCATAGGAGCGGGTTCACCCGCGATTAGGCTGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCg                                                                                                        <  2:4247372/151‑1 (MQ=21)
                                              acacCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCgg                                                                                                       <  2:1451120/151‑1 (MQ=21)
                                               cacCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGa                                                                                                      <  1:2942997/151‑1 (MQ=21)
                                                 cccttGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGAcc                                                                                                    <  2:2512570/148‑1 (MQ=255)
                                                    ttGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgc                                                                                                 >  1:959873/1‑151 (MQ=255)
                                                     cgTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgcc                                                                                                <  2:4466249/150‑1 (MQ=21)
                                                     agTAGGAGCGGGTTCTCCCGCGAATAGGCCGCACCTGCCGCCCAATCCCTCCAGTCATTCACCGCCGCAC‑CCGCCCCCGCATTCATCAATCGGCGCCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgcc                                                                                                <  1:1974476/150‑1 (MQ=21)
                                                       tAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CTGCCACCGCATTCATCAATCGGCACCATCGCCACGCGCCCTTGTAGGAGCGGGTTCACCCGCGAATACGCCGGACCTgccgc                                                                                              >  1:3939291/1‑151 (MQ=255)
                                                       tAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgccgc                                                                                              <  1:3080990/151‑1 (MQ=255)
                                                         ggAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTc                                                                                                                                                   <  1:1375280/96‑1 (MQ=255)
                                                         ggAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTc                                                                                                                                                   >  2:1375280/1‑96 (MQ=255)
                                                          gAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAAACGGCACCGTCGCCACGTACCGTTGTAGGCGCGGGCTCACCCGCGAATAGGCCGGACCTGCCGCCCa                                                                                           >  1:2096927/1‑151 (MQ=21)
                                                          gAGCGGGTGCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCa                                                                                           <  2:1131766/151‑1 (MQ=25)
                                                          gAGCGCGTTCTCTCGCGAATAGGCCCGACCACCCGCGAGATCCCCACTCTCACCCACCGCCGCGCTCTTCC‑GCTCTTTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCa                                                                                           <  2:5103290/151‑1 (MQ=12)
                                                           ggCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCaa                                                                                          <  2:3491026/150‑1 (MQ=25)
                                                           aGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGt                                                                                                                                    >  1:1094746/1‑109 (MQ=17)
                                                           aGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CTGCCACCGCATTCATCAACCGGCACCATCGCCACGCACCCTTGCCGGAGGGGGGTCACCCGCGAAAAGGCAGGCCCAgccgccaca                                                                                          >  2:3660838/1‑148 (MQ=21)
                                                           aGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCggg                                                                                                                           <  1:1838300/118‑1 (MQ=18)
                                                            gCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAAt                                                                                         <  2:1774836/151‑1 (MQ=25)
                                                             cGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCAccc                                                                                                                    <  2:1974742/123‑1 (MQ=255)
                                                               ggTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAgg                                                                                                                                 >  1:2217217/1‑108 (MQ=18)
                                                                    aCCCGCGAATAGGGCGGTCGTGCCGCCCAATACCCCCAGTCGTTCACCGCCGCAC‑CTGCCACCGCATTCATCAACCGGCAGCGTCGCCACGCACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAg                                                                                 <  2:4856514/151‑1 (MQ=25)
                                                                     cccGCGAATAGGCCGGACCTGCCGCCCAATGCCTCCAGTCCTTCAACGCCGCCC‑CCGCCACCGCATTCATCAATCGGCAGCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGt                                                                                <  2:166167/151‑1 (MQ=21)
                                                                        gagAATAGGCCGCACCTGCCGCCCAATGCCTCCAGTCATCCCCCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCAt                                                                             <  2:683437/149‑1 (MQ=21)
                                                                          gAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTCCCGCCCAATACCCCCCGTCATTc                                                                           >  1:802683/1‑151 (MQ=37)
                                                                            aTAGGCCGGACCTGCCGCCCAATACCGCCAGTCATCCCCCGCCGCGC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCAc                                                                         <  2:4638534/151‑1 (MQ=21)
                                                                            aTAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGc                                                                                                                                            <  1:1639846/84‑1 (MQ=255)
                                                                            aTAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCAc                                                                         <  1:1679859/151‑1 (MQ=255)
                                                                              aGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCg                                                                       <  1:72350/151‑1 (MQ=25)
                                                                               ggCCGGACCCGCCGCCCACTACCCCCAGTCCCTCCCCGCCGCAC‑CCGCCACCGCATTCATCAACCGGCGGCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCgc                                                                      <  2:2158335/151‑2 (MQ=17)
                                                                                gCCGGACCTGCCGCCCGATACCTCCACTCAATCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCgcc                                                                     <  1:482022/151‑3 (MQ=21)
                                                                                 ccGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCAccgccg                                                                    <  2:2981153/151‑1 (MQ=25)
                                                                                 ccGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCg                                                                    >  1:3767045/1‑151 (MQ=255)
                                                                                    gACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAc                                                                 <  1:4011610/151‑1 (MQ=21)
                                                                                       cTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGt                                                                                                                          >  2:3880392/1‑91 (MQ=255)
                                                                                         gccgccCAATACCTCCGGTCATCCCCCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCAGCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGcc                                                            <  2:2625384/151‑1 (MQ=18)
                                                                                         gccgccCAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGcc                                                            <  1:2820373/151‑1 (MQ=21)
                                                                                           cgccCGATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCCTTCATCAACCGGCACCGTCGCCCCGCACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCAc                                                          <  2:332613/151‑1 (MQ=17)
                                                                                           cgccCAATACCTCCAGTAATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCAc                                                          <  1:3725807/151‑1 (MQ=21)
                                                                                           cgccCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCAc                                                          >  1:2151995/1‑151 (MQ=255)
                                                                                            gccCAATACCCCCAGTCATTCACCGCCGCAC‑CTGCCACCGCATTCATCAATCGGCACCGTCGCCACGCACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCAcc                                                         <  1:3387964/151‑1 (MQ=255)
                                                                                            gccCAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCGTCAATCGGCCCCGACGCCACGCCCCCTGGTAAGAGCGGGTTCACCCGCGACTGGGCCGGCCCTGCCGCCCAATACCCACAGTCATTCACCGCCGCACCCGCCAcc                                                         >  2:3435730/1‑151 (MQ=21)
                                                                                             cccAATACCTCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTc                                                                                                                        >  1:5130499/1‑87 (MQ=37)
                                                                                             cccAATACCCCCAGTCATTCACCGCCGCAC‑CTGCCACCGCATTCATCAATCGGCACCATCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgccgcc                                                                                             >  2:4548010/1‑114 (MQ=255)
                                                                                               cAATCCCCCCCGTCAGTCACCGCCGCAC‑CCGCCATCGCATTCGTCCTTCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCa                                                      <  2:1013761/151‑1 (MQ=17)
                                                                                               cAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCa                                                                                                                                               >  2:4973778/1‑62 (MQ=18)
                                                                                               cAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAAt                                                                                                              <  1:3661782/95‑1 (MQ=21)
                                                                                               cAATACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCa                                                      >  1:231155/1‑151 (MQ=255)
                                                                                                 aTACCCCCAGTCATTCACCGCCGCAC‑CTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCAtt                                                    >  1:4985066/1‑151 (MQ=255)
                                                                                                  tACCCCCAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATAccccc                                                                                   <  1:4593972/119‑1 (MQ=25)
                                                                                                   ccctccAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTca                                                  <  1:3838050/147‑2 (MQ=18)
                                                                                                    cctccAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCACATACCCCCAGGCATTAACAGCCGCACCGGCCACCGCAtccac                                                 >  1:5259963/4‑147 (MQ=18)
                                                                                                    cctccAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAg                                                                                                                                  <  1:1437026/67‑1 (MQ=255)
                                                                                                     ccccAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCAtacctc                                                >  1:5153780/1‑146 (MQ=18)
                                                                                                      cccAGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGACGCACCCGCCACCGCATTCGCgg                                               >  1:3279210/1‑151 (MQ=255)
                                                                                                      cccAGTCACTCACCGCCGCGC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTcatca                                               <  2:1416243/151‑5 (MQ=17)
                                                                                                         aGTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCa                                            >  1:3439947/1‑151 (MQ=255)
                                                                                                          gTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATCCACCGTCGCACCCGCCACCGCATCCGCGGCCaa                                           >  2:1836021/1‑151 (MQ=21)
                                                                                                          gTCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCcgcg                                                                                                                 >  2:2233104/1‑81 (MQ=255)
                                                                                                           tCATTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCCGGCAAg                                          >  2:4066024/1‑151 (MQ=255)
                                                                                                             aTTCACCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGcc                                        >  1:4522643/1‑151 (MQ=255)
                                                                                                                 aCCGCCGCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATGCACCGTCGCACCCGCCACCGCATGCGCGGGCAAGCCCGcc                                    >  1:3171456/1‑150 (MQ=25)
                                                                                                                  ccgccgCAC‑CCGCCACCGCATTCATCAATCGGCACCTTCTCCAGGCCCCCTTGGAGGAGCGGGTTCATGTCCGAATAGGCCGTACCTGCCGCCGAATTCCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTc                                   <  1:2606970/151‑1 (MQ=37)
                                                                                                                  ccgccgCAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGc                                                             <  2:936776/125‑1 (MQ=255)
                                                                                                                   cgccgcAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCAc                                                          <  1:1551707/127‑1 (MQ=255)
                                                                                                                   cgccgcAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTcc                                  >  2:2804579/1‑151 (MQ=255)
                                                                                                                        cAC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATa                                                                                                             <  1:5212918/71‑1 (MQ=21)
                                                                                                                         aC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCAccc                                                                                                                    >  1:2429461/1‑63 (MQ=25)
                                                                                                                         aC‑CCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCgg                                                                                                       <  2:574926/76‑1 (MQ=21)
                                                                                                                               ccACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGAACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCg                       <  1:4090169/151‑1 (MQ=255)
                                                                                                                                    gCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCCCCTACATCAATCGGTGGc                  >  2:1169980/1‑151 (MQ=255)
                                                                                                                                      aTTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATAccccc                                                                                   >  2:5269627/1‑84 (MQ=17)
                                                                                                                                      aTTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATAcccc                                                                                    <  1:115282/83‑1 (MQ=255)
                                                                                                                                       ttCATCAATCGGCACCATCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCAt                                                     <  2:2133493/113‑1 (MQ=255)
                                                                                                                                           tcaATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCATCGCCa           >  1:3552228/1‑151 (MQ=255)
                                                                                                                                            cactCGGCACCCTCGCCACGCACCCTTGTAGGAGCGGGGTCACCCGCGAACAGGCCGCACCTGCCGCCCTCTACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCATCGCCAc          <  2:5160228/148‑1 (MQ=21)
                                                                                                                                                  gCACCGTCGCCACGTACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCgg                                                                                                       <  1:1906587/52‑1 (MQ=14)
                                                                                                                                                   cACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCATCGCCACGTACCGt   >  1:4196075/1‑151 (MQ=255)
                                                                                                                                                   cACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCg                                                        >  1:5081197/1‑98 (MQ=255)
                                                                                                                                                       |                                                                                                                                                   
TCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAC‑CTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCATCGCCACGTACCGTT  >  CP009974/2910108‑2910405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A