Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I1 R1
|
404 |
265.1 |
10478538 |
96.8% |
10143224 |
150.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP009974 |
2,910,258 |
A→G |
intergenic (+162/‑497) |
gudD → / → RPPX_12965 |
glucarate dehydratase/GABA permease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009974 | 2,910,258 | 0 | A | G | 87.8%
| 902.8
/ 96.2
| 416 | intergenic (+162/‑497) | gudD/RPPX_12965 | glucarate dehydratase/GABA permease |
| Reads supporting (aligned to +/- strand): ref base A (36/14); new base G (139/219); total (182/234) |
| Fisher's exact test for biased strand distribution p-value = 1.26e-05 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 420 total aligned reads displayed.
TTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCATCGCCACGTACCGTT > CP009974/2910110‑2910405
|
tCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCg > 1:4835188/1‑151 (MQ=255)
gcgGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGcc < 1:1274532/151‑1 (MQ=255)
gcgGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGcc < 2:1188407/151‑1 (MQ=255)
gggCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCAc > 1:4153682/1‑151 (MQ=25)
gCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTTACCGCCGCACCCGCCACCGCCTCCATCAATCGGCACCGTCGCCAcat > 1:426502/1‑149 (MQ=25)
cAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACgtc > 1:4806/1‑149 (MQ=25)
cccGCTACTGCATCAGCCGGTGGTGTCGCCCCACCCCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCAGTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTAccgt < 2:1076462/151‑3 (MQ=18)
gCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTTGt < 2:146081/151‑1 (MQ=21)
cTACATCAACCGGCGCTGTCGCCACGCACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGa < 2:4153682/151‑1 (MQ=17)
aCCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTc < 1:796585/124‑1 (MQ=255)
ggtggtGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAg > 1:1667585/1‑141 (MQ=21)
gtggtgTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTc < 1:3864194/120‑1 (MQ=255)
gCCCCACACCGTCGTCGGAGCAGGTTCACCCGTGAATCGGCCGGACCTGCCGCCCAATGCCTCCAGTCCTTCCCCGCCGCACCCGCCTCCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTGGTGGGAGCGGGTTCACCCGCGAATAg < 2:2716977/151‑1 (MQ=255)
ccacgcacCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCCCGCCCC‑CTTGTAGCTGCGGGTGCACCCGCGAATAgg > 1:4437614/6‑151 (MQ=17)
cccACACCGTCGTAGGAGCGGGTTCACCTCGGAAGAGCACACACCTGCCCCCCAATACCTCCAGACGTTCACGTCCGCACCCGCCACCGTGAACAACAATCGGCACCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGc > 1:2850777/1‑151 (MQ=16)
ccACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGcc < 1:3766412/151‑1 (MQ=21)
ccACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGcc < 1:2011283/151‑1 (MQ=21)
cgcacCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCCCCGTCGCC‑CGCCCCACCTGTAGGAGCTGGACCACCCGCGAAGAGACCg > 2:2665874/3‑151 (MQ=14)
acacCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCgg < 1:4718103/151‑1 (MQ=21)
cacCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGa > 1:3910314/1‑151 (MQ=255)
ccGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATCCCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGAcc < 1:966627/151‑1 (MQ=255)
cgtcgtAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCt < 2:654829/151‑1 (MQ=21)
cgtcgtAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCt < 1:1805305/151‑1 (MQ=255)
gtcgTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCGCCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTg < 2:1969065/148‑1 (MQ=255)
ggggTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTg < 2:1369823/148‑1 (MQ=25)
ttGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgc < 1:241936/151‑1 (MQ=255)
ccggaGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCCGCCCAATACGGCCAGTCATTCACCTCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgc < 2:5020495/147‑1 (MQ=21)
tGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCa > 2:4311768/1‑98 (MQ=255)
tGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgcc > 1:2961669/1‑151 (MQ=255)
ggTAGGAGCGGGTGCACCCGCGAATAGGCCGGAGCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgcc < 2:1645882/150‑1 (MQ=25)
gTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCCCCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgccg < 2:776143/151‑1 (MQ=21)
gAGCGGGTTCACCCGCGAATAGGCCGGACCTTCGGCCGAGCACCGTCAGTGGTTAGCTGGCAGACCTGCGACGGCGTTCTTTCATTGGCAACGACGCACCGCTCC‑CTTGTAGGAGTGGCTTCACCTGCGATTAGGCCGGAAACGCCGCCCa > 2:465396/1‑151 (MQ=255)
aGCGGGTTCACCCGCGAATAGGCCGGACCTGCCACCCAATACCCCCAGGCATTCACCGCCGCACGCGCCACCGCCTTCATCAACCGGCACCCTCGCAACGCACC‑CTTGTAGGAGCGGGGTCACCCGCGAATAGGCCGGCCCAGCCGCCCaa > 2:3407874/1‑151 (MQ=21)
gCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGc < 1:2239542/100‑1 (MQ=255)
gCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCATCGCCACGc > 2:2239542/1‑100 (MQ=255)
gggTGCAGCCGCTGATAGCGCGGGCGTGCCGCCCAATGCGGCCCGTGATTCGCCGGGGGGCCCGCCACCGCGTTCATCAATCTGCGCGGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATAc < 2:2483225/151‑1 (MQ=12)
ggTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCCCGCCCC‑CTTGTACGCCCCCGCGCACCCGCGAATCGGCCGGACCTGCCGCCCAATAcc > 2:3564988/1‑151 (MQ=18)
cACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCa < 1:1164610/151‑1 (MQ=255)
cccGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGt < 1:1494214/151‑1 (MQ=25)
cgcgAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCAccc < 1:456126/113‑1 (MQ=21)
cgcgAATAGGCCGGACCCGCGGCCCAAGACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTTGTGGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCa < 2:4900896/151‑1 (MQ=25)
gcgAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGCATAGGCCGGACCCGCCGCCCAATACCCCCAGCCAt > 2:278526/1‑151 (MQ=37)
cgAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCCCGCCCC‑CTTGTCGGAGCGGGCTCACCCGCGAATACGCCGGACCTCCCGCCCACTACCCCCAGTCact > 2:4506664/1‑149 (MQ=25)
gAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAgg > 1:1735414/1‑97 (MQ=18)
gAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTc > 1:3829775/1‑151 (MQ=255)
aagaGGGCGGTCCTGCCGCCCAGTGCCGCCAGTCATTCACTGCCGCCCCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCa < 2:4862841/148‑1 (MQ=21)
aaTAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCGTCAATCGGCCCCGTCGCCCCGCCCC‑CTGTTACGAGCGCGCGCACCCGCGAATAGGCCGGCCCTCCCGCCCAATCCCCCCAGCCATCCa > 2:2939288/1‑151 (MQ=18)
aaTAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCATCGCCACGCACC‑CTTCGAGGAGCGGCGTCACCCGCGAATAGGCCGGAACGCCCGCCCAAGACCCCCAGCCacgaa > 1:3621312/1‑147 (MQ=21)
tAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCAcc < 1:3995065/151‑1 (MQ=25)
tAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCAcc < 1:2541240/151‑1 (MQ=25)
tAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGCAGGAGCCGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATCCAcc > 1:4652647/1‑151 (MQ=37)
aaGGCCGCACCCGCCGCCCGATACCGCCGGTCACCCCCCGCCGGACCCGCCACCGCATTCATCAATCGGCGCCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCAcc < 2:3682087/150‑1 (MQ=18)
aGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCGTCGCCACGCACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCg < 1:5109011/151‑1 (MQ=255)
ccGGACCTGCCGCCCAATGCCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCAccgccg < 2:5206989/151‑1 (MQ=25)
ccGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACC‑CTAGTAGGAGCGGGTTCACCCGCGAATGAGCCGGGCCCGCGGCGCACGCCCCCCCGTCATACAccaccc > 2:955901/1‑147 (MQ=25)
cGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAACCGGCACCGTCGCCCCGCCCT‑CTTGTAGAAGCGCGCTCACCCGCGAATAGGCCGGACCTGCCGCGCAATAGCCCGAGTCATCCACAGTCGc > 2:895657/1‑151 (MQ=21)
ggACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATCGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGcc > 2:4328606/1‑150 (MQ=255)
ggACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgcc > 1:897203/1‑121 (MQ=255)
ggACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAACCAGCACGCTCGCCCCGCCCC‑CTTGTAGGAACGGGTTCACCCGCGAAGAGGCCGGCCCAGCCGCCCAAAACCCCCAGCCAGCCACCGACGcc > 1:4086486/1‑150 (MQ=21)
gACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgc < 1:5189678/119‑1 (MQ=255)
aCCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCt < 1:101257/116‑1 (MQ=255)
cTGCCGCCCACTGCCCCAAGTCATTCCCCGCCGCACCCGCCACCACATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAcctg < 2:2284820/151‑3 (MQ=18)
tGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGc < 1:2914928/151‑1 (MQ=21)
tGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCACTCGGCACCATCGCCCCGCACC‑CTTGTACGCGCCGGCTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGCCACCCACCGCCGCACgcgc > 2:2607847/1‑151 (MQ=25)
tGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTg < 2:1014754/114‑1 (MQ=37)
tGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCAGTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGc < 1:1904145/151‑1 (MQ=21)
ccgccCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCAGCACCGCGGCCACGGACC‑GTGGGAAGAGCGCGGTCACCGCCGAATCGGCAGGAACAGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCa > 2:4552466/1‑151 (MQ=16)
cgccCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑Ct > 1:3192272/1‑74 (MQ=255)
cgccCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAAt < 1:4899818/120‑1 (MQ=25)
cgccCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTGGTAGGAGGGGGTTCACCCGCGAATAGGCCGGACCGGCCGGCCAAGACCCCGAGTCATCTCCCGTCGCAGCTGccgc > 1:110654/1‑149 (MQ=25)
cccAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgccgcc > 1:534452/1‑114 (MQ=21)
cccAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgccgcc < 2:534452/114‑1 (MQ=21)
cgaTACCCCCAGTCATCCACCGCCGCACCCGCCACCGCATTCATCCGTCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCa < 2:2105780/149‑1 (MQ=18)
aaTACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCAt > 1:2361723/1‑151 (MQ=255)
aaTACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCCTCGCACCCGCCACCGCAt > 2:2861124/1‑151 (MQ=255)
aCCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCa < 2:3219155/123‑1 (MQ=255)
ccccAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACC‑CTTGCAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCTGCACCCGCCACCGCATTcccc > 2:2188672/1‑148 (MQ=255)
cccAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTcatca > 2:191890/1‑147 (MQ=255)
cAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCATCGCCACGCACC‑CTTGTAGGAGCGGGTTCACCCGCGAATAgg > 1:160236/1‑89 (MQ=255)
ggtgatccACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCa < 1:1357091/144‑1 (MQ=21)
aGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCGTCGCCACGCACC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATCcgccgacc > 1:2109512/1‑146 (MQ=255)
aGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCAtt > 1:4487841/1‑119 (MQ=25)
ggcATTCACCGCCGCACCCGCCACCGCACTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCaa < 1:4323878/149‑1 (MQ=255)
tCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCg < 2:2429206/125‑1 (MQ=255)
tCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAg > 1:2711407/1‑151 (MQ=255)
gcggtCACCGGCGGGCCCGCCAGCGCATTCATCAGTCGGCGCCGTCGCCACGCACC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAg < 2:1605238/147‑1 (MQ=18)
cATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCACGGGCAAGc > 1:3269843/1‑151 (MQ=21)
tCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTg > 2:4222716/1‑91 (MQ=21)
tCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTg < 1:4222716/91‑1 (MQ=25)
cgccgcACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCAGCACCTGCCACCGCATTcatcaat > 2:706015/1‑134 (MQ=14)
gccgcACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCa < 2:3876326/93‑1 (MQ=25)
cACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCa < 2:3915219/106‑1 (MQ=21)
cACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACAt > 1:1206506/1‑151 (MQ=255)
cATTCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCa > 2:2366755/1‑151 (MQ=255)
ttCATCAATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCATc < 1:2521492/151‑1 (MQ=255)
tcaATCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTcac > 1:5153796/1‑111 (MQ=14)
aTCGGCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCATCGCCACGt > 2:3781335/1‑151 (MQ=255)
cGGCACCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTc > 2:1723716/1‑78 (MQ=11)
ggCACCGTCGCCACGCCCC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCa < 1:705139/82‑1 (MQ=255)
aCCGTCGCCACGTACC‑GTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCAc > 2:3119293/1‑80 (MQ=11)
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TTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACC‑CTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCATCGCCACGTACCGTT > CP009974/2910110‑2910405
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
