Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I1 R1
|
368 |
332.2 |
13092066 |
97.0% |
12699304 |
150.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP009974 |
2,910,258 |
A→G |
intergenic (+162/‑497) |
gudD → / → RPPX_12965 |
glucarate dehydratase/GABA permease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009974 | 2,910,258 | 0 | A | G | 87.5%
| 1292.2
/ 148.9
| 620 | intergenic (+162/‑497) | gudD/RPPX_12965 | glucarate dehydratase/GABA permease |
| Reads supporting (aligned to +/- strand): ref base A (37/39); new base G (238/294); total (284/336) |
| Fisher's exact test for biased strand distribution p-value = 5.40e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 620 total aligned reads displayed.
TTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCATCGCCACGTACCGTT > CP009974/2910110‑2910405
|
gcgcccgCCCGCGCCTTCATCAACCGGCGGCGTCGCCCCGCACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCAc < 2:6515738/145‑1 (MQ=17)
gCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACgt > 1:5710682/1‑150 (MQ=255)
aaGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCAc < 2:5390613/147‑1 (MQ=25)
ggCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTAcc < 2:4269486/150‑1 (MQ=21)
cTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGa > 2:900631/1‑151 (MQ=25)
cTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCACCACGTACCCTTCTAGGa > 2:1009048/1‑151 (MQ=21)
aCATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGc > 1:5527017/1‑151 (MQ=21)
cATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCg < 2:5021109/151‑1 (MQ=21)
aTCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCgg < 2:2973494/151‑1 (MQ=21)
ggtggtGTCGCCCCACACCGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCCGCCCAATGCCTCCAGTCATTCACCGCCGCGCCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCGcc < 2:2686837/151‑1 (MQ=21)
ctctgtCGCCCCGTACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCACCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGAACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCcg < 1:2454518/148‑1 (MQ=18)
cggtgCCGCCCCGCACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCGATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCGTCGCCACGCACCCTTGTAGGAGCGGGTTCACCcg < 2:3453609/150‑1 (MQ=255)
ggtgTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCcgc < 1:1514539/151‑1 (MQ=21)
gtCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCa < 2:3966314/119‑1 (MQ=255)
gccacgcacCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATGCCCCCCGTCGTTAACCGCCCCCCCTGCCACCGCATCCATCATCCGGCCCCGTCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAg < 2:1766987/145‑1 (MQ=18)
ccacgcacCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATGCCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAgg < 2:1519859/146‑1 (MQ=21)
cgcgtacCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGc < 2:645187/146‑1 (MQ=255)
cccACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGc < 1:4240658/151‑1 (MQ=21)
cccACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGc < 1:4538721/151‑1 (MQ=21)
cacgtacCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTc > 2:2067603/6‑110 (MQ=14)
ccggacCGTGGTGGGAGCGGGTTCACCCGCGAATAGGCCGAACCTGCCGCCCAATACCCCCGGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGcc < 2:3351764/147‑1 (MQ=21)
gtacCGTCGTAGGGGCGGGTGCACCCGCGAATAGCCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCgg < 2:422563/149‑1 (MQ=21)
ccGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAAGCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGAcc < 1:1009048/151‑1 (MQ=21)
gtGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCCCCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgc < 1:6350408/150‑1 (MQ=255)
tGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgcc < 1:2911883/151‑1 (MQ=255)
cgTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCAcc < 1:3673383/129‑1 (MQ=18)
tAGGGGCTGGTTCACCCCCGAATAACCCGCTCCTGCCGCCCAATACCTCCAGTCACTCCTCGCCGCTCCCGCCACCGCATTCATCACTCGGCACCGTCGCCCCCTGCCGTGGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgccgc < 2:1639978/151‑1 (MQ=16)
tAGGGGCGGGATCACCCGCGAATAGGCCGCACCTGCCGCCCAATGCCGCCACTCGTTCCCCCCCGCACAAGCCACCGCCTTCATCAATCGGTACCGTCGCCACGCACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgccgc < 1:6194787/151‑1 (MQ=21)
tAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCACCAATCGGCACCCTCGCCCCGCACCCTATGACAACCGCACGCACCCGCGAAGAAGCCGGACCAgccgc > 2:4505260/1‑151 (MQ=14)
ggAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGccc > 1:1593723/1‑151 (MQ=255)
ggAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCACCAAACCGCACCCTCGCCACCCCCCCTTGTAGGAGCGGGCTCACCAGCGAACAGGCCGCACCCCCCGccc > 2:2872948/1‑151 (MQ=17)
gCGGGTTCCGCCGCGACTAGGCCGGAGTTGCCGCCCAATCCCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCGCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAAt < 2:689157/151‑1 (MQ=21)
gCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCAccc > 1:5787464/1‑104 (MQ=18)
cGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACTCCCCCTTGTAGGACCCCGCTCACCCCCGAATAGGCCGGACCTCCCGCCCACTa > 1:4837289/1‑151 (MQ=18)
ttCACCCGCGAATAGGCCGGACTTGCTGCCCATTCCCCCCACTCATTCACCGCCGCACCCGCCCCCGCCTTCACCATTCGGAACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATAcccc < 2:1182994/151‑1 (MQ=25)
tCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCAccc < 1:3141732/118‑1 (MQ=21)
cccccGCGCGTCGGCCGTCCCTGCCGCCCAATGCCTCCGGTCGCTCCCCGCCGCGCCCGCCCCCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCa < 2:6117620/149‑1 (MQ=18)
cACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGc < 1:541606/107‑1 (MQ=255)
aCCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAg < 1:3049596/151‑1 (MQ=25)
cccGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATa < 2:5569481/122‑1 (MQ=255)
ccGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGt > 1:1661599/1‑108 (MQ=21)
ccGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCCGGTTCACCCGCGAATAGGCCCGACCTGCCGCCCAATACCCCCATTc > 2:2431593/1‑151 (MQ=25)
cgcgAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCgg < 2:1449694/105‑1 (MQ=255)
cgcgAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCgg > 1:1449694/1‑105 (MQ=255)
gcgAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCAt < 1:2120577/151‑1 (MQ=25)
gAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGGACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTc > 2:2581413/1‑151 (MQ=37)
gAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCCCCACGCCCCCTTGTATGAGCGGGCTCACCCGCGCATAGGCGGGTCCGGCCGCCCCATACCCGCAATcctcc > 2:5253853/1‑147 (MQ=21)
atagcgcGGACCTGCCGCCCGTTACCGCCGGTCATTCACCGCCGCGCCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCAc < 2:5821620/145‑1 (MQ=21)
aTAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCgg < 1:5166212/100‑1 (MQ=255)
aGGCCGGACCTGCCGCCCAATACCTCCAGTCGCTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCg < 2:4665094/151‑1 (MQ=25)
ggCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGcc < 1:4900409/82‑2 (MQ=18)
gCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAg < 2:2797213/93‑1 (MQ=21)
ccGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTCCCGCGCAATACCCCCTGCCATCCACCGACg > 1:647946/1‑151 (MQ=37)
ccGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGcc < 1:6166645/114‑1 (MQ=25)
cgcgccTGCGGCCCAATACCGCCGGGCATTCCCCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACcgccgc < 2:4621644/147‑1 (MQ=18)
cGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGt > 1:421108/1‑86 (MQ=18)
ggACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATATGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCa > 1:3956981/1‑151 (MQ=255)
gACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAc < 1:344162/151‑1 (MQ=21)
cTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGCCCTGCCGCCCAACACCCCCCGCCATCCACCGTCCCAcccc > 2:4164177/1‑150 (MQ=25)
cTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCg > 1:329590/1‑151 (MQ=255)
gccgccCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAAAAGGcc < 2:5716119/106‑1 (MQ=21)
accgccCAGTACGTCCACTCACTCAGCGCCGCCCGCGTCAACGCTTACATCAATCGGTACGGTCGCCACGTCCCGGTGTAGGAGCGGGTTGTCCCGCGAATAGGCCGGACCTGCCCCCCAATACCCCCAGTCATTCACCGGCGCACCCGcc < 2:53238/150‑1 (MQ=9)
gccCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGcc > 1:1139180/1‑68 (MQ=255)
gccCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCAcc > 1:53226/1‑151 (MQ=255)
aaTCCCTCCAGTCATCCCCCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCAt < 2:813439/151‑1 (MQ=18)
aCCTCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCGTCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATa > 1:2363351/1‑113 (MQ=255)
aCCTCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATa < 2:2363351/113‑1 (MQ=255)
aCCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTcg > 1:1903487/1‑151 (MQ=255)
ccccAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTcgcc > 1:5586804/1‑150 (MQ=255)
cccAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGACACGCCCCCTTATAGGAGCAGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCgg < 1:660712/151‑1 (MQ=25)
ccAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGc < 1:888416/57‑1 (MQ=255)
ccAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTcatcaa < 1:1315731/151‑6 (MQ=18)
ccAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTcatcaa < 1:2587909/151‑6 (MQ=18)
ccAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATCCCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTcgcccg > 2:4743827/1‑148 (MQ=21)
gTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCAc > 2:134224/1‑121 (MQ=255)
tCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAg > 1:4642532/1‑151 (MQ=255)
tCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCCCCTTCGCTGGCAAg > 2:2274458/1‑151 (MQ=25)
cATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgcc < 1:6051981/96‑1 (MQ=25)
cACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGc < 1:1852741/151‑1 (MQ=255)
cACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCCTGTACGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGCCATTCACCCTCGCACCCCCCACCGCCCTCGCGCGCAAGCCCGc > 2:6022545/1‑151 (MQ=21)
ccgccgCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTc > 1:2031916/1‑151 (MQ=255)
gccgcACCTGCCACCGCATTCATCAATCGGCACCATCGCCACg < 1:3573074/43‑1 (MQ=255)
gccgcACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGt < 1:5934100/52‑1 (MQ=255)
cccgCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCAcc > 2:6227022/4‑114 (MQ=255)
cccgCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGCGCAAGCCCGCTCCTtcatca > 2:1273687/4‑151 (MQ=21)
cgCCACCGCCTTGGCCACTCGGCACCGGCGCAACGCCCCCTTGAAGGAGCGGGCTCACCCGCGAATCGAGGGGACCTGCCGCCCCATACCCCCAGTCATGCACCGTCCCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAAt > 2:4897044/2‑151 (MQ=255)
gCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATc > 1:4055659/1‑151 (MQ=255)
cccccGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCg < 1:2693465/148‑1 (MQ=255)
ccACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCg < 1:2846175/151‑1 (MQ=255)
aCCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCACTACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCACGCCCGCTCCTACATCACTCGGt > 1:4996281/1‑151 (MQ=25)
ccGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCACTCggcg > 2:3074916/1‑149 (MQ=255)
aTTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTcatcaa < 2:1102502/121‑6 (MQ=11)
tcacccaTCGGCACCGTCGCCCCGCCCCCTTGCAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATACGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCATCg < 1:1772650/145‑1 (MQ=18)
tcaATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCCATACCCCCAGGCATTCACCGTCGCACCCGCCACCCCATTCGCGGGCAAGCCCGCTCCTACACCACTCGGTGGCATCGccc > 2:3239465/1‑150 (MQ=21)
aTCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCAtt < 1:3838322/107‑1 (MQ=255)
aTCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCAtt > 2:3838322/1‑107 (MQ=14)
cGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCgg > 1:4738336/1‑54 (MQ=11)
ggCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCATCGCCACGTAcc > 2:1870530/1‑151 (MQ=255)
gCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCATCGCCACGTACCg < 2:3613729/151‑1 (MQ=255)
gCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCAGCGCCACGTACCg > 1:4311358/1‑151 (MQ=255)
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TTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCAATCGGTGGCATCGCCACGTACCGTT > CP009974/2910110‑2910405
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
