Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	343	268.7	10873516	97.0%	10547310	150.6

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑G‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAAGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCG  >  CP009974/4147024‑4147311

TGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑G‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGcttct                                                                                                                                           <  SRR10918230.4847921/151‑6 (MQ=33)

   TTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑G‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGcttcttgg                                                                                                                                        <  SRR10918230.527062/151‑9 (MQ=33)

       cgatctTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑G‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGcttcttggatgt                                                                                                                                    <  SRR10918230.1929706/145‑13 (MQ=34)

        tattaTCGCGTTAGACAAAAAGTGACTCGACGTAAGGGCGAAAAGGAGAGTCAGCGTCGCCATCGCAAATGGACTGTTAACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑G‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGcttcttggatgtg                                                                                                                                   <  SRR10918230.146285/146‑14 (MQ=30)

         TTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑G‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGcttcttggatgtgg                                                                                                                                  >  SRR10918230.1130827/1‑137 (MQ=34)

          TTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑G‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGcttcttggatgtggg                                                                                                                                 <  SRR10918230.1905460/151‑16 (MQ=34)

            GTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCA                                                                                                                                      <  SRR10918230.2834055/151‑1 (MQ=29)

             TCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑G‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGcttcttggctgtgggcat                                                                                                                              >  SRR10918230.4951686/1‑133 (MQ=34)

              CGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATT                                                                                                                                    <  SRR10918230.4996409/151‑1 (MQ=29)

                      ACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGA                                                                                                                            <  SRR10918230.2537861/151‑1 (MQ=29)

                      ACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGA                                                                                                                            <  SRR10918230.5209005/151‑1 (MQ=29)

                       CAAGAAGTGACTCGGCGTGAGGGCGAAAAGGTGAGTCGGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACGGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAG                                                                                                                           <  SRR10918230.4866561/151‑1 (MQ=25)

                         AAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTTAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTA                                                                                                                         >  SRR10918230.5391930/1‑151 (MQ=28)

                         AAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTA                                                                                                                         >  SRR10918230.4486460/1‑151 (MQ=29)

                         AAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTA                                                                                                                         <  SRR10918230.2495467/151‑1 (MQ=29)

                         AAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTA                                                                                                                         >  SRR10918230.1511379/1‑151 (MQ=29)

                          AAAGTGACTCGCCGTAAGGGCGAAATGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTGCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑G‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGtttattgtatgggggcatgtctattgagtag                                                                                                                 >  SRR10918230.2513641/1‑120 (MQ=33)

                            AGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGT                                                                                                                      <  SRR10918230.3720679/151‑1 (MQ=29)

                             GTGACTCGCCGGAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTA                                                                                                                     <  SRR10918230.1870825/151‑1 (MQ=28)

                              TGGCTCGCCGTAAGGGCGAAAAGGAGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTAT                                                                                                                    <  SRR10918230.868837/151‑1 (MQ=28)

                              TGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTAT                                                                                                                    >  SRR10918230.4252259/1‑151 (MQ=29)

                                CCTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTC                                                                                                                  <  SRR10918230.2863068/151‑1 (MQ=29)

                                ACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTC                                                                                                                  <  SRR10918230.4662774/151‑1 (MQ=29)

                                     CCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCG                                                                                                             >  SRR10918230.3156313/1‑151 (MQ=27)

                                     CCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCG                                                                                                             >  SRR10918230.1737442/1‑151 (MQ=27)

                                      CGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTtatttgc                                                                                                            >  SRR10918230.1799217/1‑144 (MQ=29)

                                       GTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCG                                                                                                           >  SRR10918230.3324541/1‑151 (MQ=23)

                                        TAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGC                                                                                                          >  SRR10918230.4948064/1‑151 (MQ=21)

                                          AGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAG                                                                                                        >  SRR10918230.2164575/1‑151 (MQ=17)

                                           GGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGG                                                                                                       >  SRR10918230.198724/1‑151 (MQ=15)

                                           GGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGG                                                                                                       <  SRR10918230.3782292/151‑1 (MQ=15)

                                            GGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCGCATCGAGTAGGTATTCATTCGCGCAGGT                                                                                                      >  SRR10918230.1833492/1‑151 (MQ=10)

                                            GGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGT                                                                                                      >  SRR10918230.4297018/1‑151 (MQ=10)

                                            GGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGT                                                                                                      <  SRR10918230.4259412/151‑1 (MQ=10)

                                            GGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGT                                                                                                      <  SRR10918230.4006549/151‑1 (MQ=10)

                                            GGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGT                                                                                                      <  SRR10918230.4006502/151‑1 (MQ=10)

                                                  AAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCA                                                                                                <  SRR10918230.3090764/151‑1 (MQ=6)

                                                   AGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCAT                                                                                               >  SRR10918230.5065948/1‑151 (MQ=6)

                                                        AGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCA                                                                                          <  SRR10918230.2263977/151‑1 (MQ=6)

                                                         GTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCAC                                                                                         <  SRR10918230.3682371/151‑1 (MQ=6)

                                                          TCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACC                                                                                        >  SRR10918230.1242874/1‑151 (MQ=6)

                                                            AGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑G‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑TTCTTGCGTCTTGGATGTGGGCATTCACATCGAGTCGGTATTCATTCGCGCAGGTGGCGCATAGTCAGCTT                                                                                      >  SRR10918230.4106785/1‑151 (MQ=6)

                                                             tatctGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTT                                                                                     <  SRR10918230.4486287/146‑1 (MQ=6)

                                                             GCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTT                                                                                     <  SRR10918230.1892406/151‑1 (MQ=6)

                                                              CGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTC                                                                                    <  SRR10918230.369875/151‑1 (MQ=6)

                                                              CGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTC                                                                                    <  SRR10918230.4319155/151‑1 (MQ=6)

                                                               GTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑GCATCTTACTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCCTGTGGCGCTTAGGGACCTTTCC                                                                                   >  SRR10918230.4763847/1‑151 (MQ=18)

                                                                  GCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCC                                                                                >  SRR10918230.4093382/1‑151 (MQ=6)

                                                                   CCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCC                                                                               <  SRR10918230.2313099/151‑1 (MQ=6)

                                                                     ATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTT                                                                             >  SRR10918230.3555514/1‑151 (MQ=6)

                                                                       CGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTAC                                                                           <  SRR10918230.207971/151‑1 (MQ=6)

                                                                           AATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCgcagatcggaagagcacacgtctgaactccagtcacgga                                                                       >  SRR10918230.4339337/1‑112 (MQ=27)

                                                                           AATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCG                                                                       >  SRR10918230.1394201/1‑151 (MQ=6)

                                                                           AATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCG                                                                       >  SRR10918230.2167458/1‑151 (MQ=6)

                                                                           AATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑G‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGTT‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTTCACCCTTACGGCG                                                                       >  SRR10918230.2609125/1‑151 (MQ=6)

                                                                             TGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGG                                                                     >  SRR10918230.2229939/1‑151 (MQ=6)

                                                                             TGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGG                                                                     >  SRR10918230.2229643/1‑151 (MQ=6)

                                                                             TGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGG                                                                     <  SRR10918230.5325730/151‑1 (MQ=6)

                                                                                  TGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACT                                                                >  SRR10918230.4933396/1‑151 (MQ=6)

                                                                                   GTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTT                                                               <  SRR10918230.3620101/151‑1 (MQ=4)

                                                                                   GTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTT                                                               <  SRR10918230.3620004/151‑1 (MQ=4)

                                                                                    TTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTTGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTT                                                              >  SRR10918230.2308006/1‑151 (MQ=2)

                                                                                    TTCACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTT                                                              <  SRR10918230.4316906/151‑1 (MQ=2)

                                                                                       ACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTG                                                           >  SRR10918230.2996654/1‑151 (MQ=0)

                                                                                       ACTGAGCCAAAACAGACGAGTTCGCTTCTTG‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTG                                                           <  SRR10918230.754928/151‑1 (MQ=0)

                                                                                         TGAGTCAAAACAGACGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTG                                                                                                                                                >  SRR10918230.237039/1‑50 (MQ=0)

                                                                                                             C‑‑‑‑‑‑‑G‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAAGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAAC                              <  SRR10918230.293515/151‑1 (MQ=0)

                                                                                                                     G‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGCGCAGGTGGC                                                                                                   <  SRR10918230.576858/81‑1 (MQ=2)

                                                                                                                     G‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGCGCAGG                                                                                                       <  SRR10918230.4702934/77‑1 (MQ=12)

                                                                                                                     G‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGCGCAGG                                                                                                       >  SRR10918230.3947203/1‑77 (MQ=12)

                                                                                                                     G‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGCGCAGG                                                                                                       >  SRR10918230.461056/1‑77 (MQ=12)

                                                                                                                     G‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGCGC                                                                                                          >  SRR10918230.4165585/1‑74 (MQ=23)

                                                                                                                     G‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTG                                                                                                                                                <  SRR10918230.4647395/36‑1 (MQ=0)

                                                                                                                              TTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTG                                                                                                                                                >  SRR10918230.1192516/1‑34 (MQ=0)

                                                                                                                               TCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAAGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTG                          >  SRR10918230.2136436/1‑151 (MQ=0)

                                                                                                                                 TTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAAGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGgc                        >  SRR10918230.2383470/1‑149 (MQ=0)

                                                                                                                                 TTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAAGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGGCAAACGCGACAAAAAGTAACCAAAAAACGCTGgc                        >  SRR10918230.2383488/1‑149 (MQ=0)

                                                                                                                                 TTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTG                                                                                                                                                <  SRR10918230.5079871/31‑1 (MQ=0)

                                                                                                                                 TTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTG                                                                                                                                                <  SRR10918230.5395016/31‑1 (MQ=0)

                                                                                                                                 TTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTG                                                                                                                                                >  SRR10918230.654857/1‑31 (MQ=0)

                                                                                                                                 TTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTG                                                                                                                                                <  SRR10918230.3143936/31‑1 (MQ=23)

                                                                                                                                                   TTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAAGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTG‑GCTCCTATCATCCGGCCCCT     >  SRR10918230.5345966/1‑151 (MQ=0)

                                                                                                                                                      TTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAAGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTG‑GCTCCTATCATCCGGCCCCTGCG  <  SRR10918230.2668516/151‑1 (MQ=0)

TGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑G‑‑‑‑‑‑‑CTTCTTGCTTCTTGCTTCTTGCTTCTTGC‑‑‑‑‑‑‑T‑‑‑‑‑‑‑TCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAAGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCG  >  CP009974/4147024‑4147311

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`