Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F1 I1 R1 368 332.2 13092066 97.0% 12699304 150.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP009974 4,147,169 (CTTCTTG)5→6 intergenic (+421/‑600) RPPX_18425 → / → RPPX_18430 enoyl‑CoA hydratase/conjugal transfer protein TraR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0099744,147,1331.G81.7% 127.4 / 65.9 93intergenic (+385/‑636)RPPX_18425/RPPX_18430enoyl‑CoA hydratase/conjugal transfer protein TraR
Reads supporting (aligned to +/- strand):  ref base . (9/8);  new base G (38/38);  total (47/46)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0099744,147,1332.C81.7% 126.9 / 65.8 93intergenic (+385/‑636)RPPX_18425/RPPX_18430enoyl‑CoA hydratase/conjugal transfer protein TraR
Reads supporting (aligned to +/- strand):  ref base . (9/8);  new base C (38/38);  total (47/46)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0099744,147,1333.T81.7% 127.1 / 65.7 93intergenic (+385/‑636)RPPX_18425/RPPX_18430enoyl‑CoA hydratase/conjugal transfer protein TraR
Reads supporting (aligned to +/- strand):  ref base . (9/8);  new base T (38/38);  total (47/46)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0099744,147,1334.T81.7% 127.4 / 65.7 93intergenic (+385/‑636)RPPX_18425/RPPX_18430enoyl‑CoA hydratase/conjugal transfer protein TraR
Reads supporting (aligned to +/- strand):  ref base . (9/8);  new base T (38/38);  total (47/46)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0099744,147,1335.C81.7% 127.4 / 65.8 93intergenic (+385/‑636)RPPX_18425/RPPX_18430enoyl‑CoA hydratase/conjugal transfer protein TraR
Reads supporting (aligned to +/- strand):  ref base . (9/8);  new base C (38/38);  total (47/46)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0099744,147,1336.T81.7% 127.4 / 65.7 93intergenic (+385/‑636)RPPX_18425/RPPX_18430enoyl‑CoA hydratase/conjugal transfer protein TraR
Reads supporting (aligned to +/- strand):  ref base . (9/8);  new base T (38/38);  total (47/46)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0099744,147,1337.T81.7% 127.7 / 65.7 93intergenic (+385/‑636)RPPX_18425/RPPX_18430enoyl‑CoA hydratase/conjugal transfer protein TraR
Reads supporting (aligned to +/- strand):  ref base . (9/8);  new base T (38/38);  total (47/46)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 138 total aligned reads displayed.

AGCGGAGCGTAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑GCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAAGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTC  >  CP009974/4146983‑4147246
                                                                                                                                                       |||||||                                                                                                                               
agcgcagcgcAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTc                                                                                                                                        <  2:6426259/151‑1 (MQ=25)
agcgcagcgcAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTc                                                                                                                                        <  1:3693204/151‑1 (MQ=255)
agcgcagcgcAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTc                                                                                                                                        <  1:1735398/151‑1 (MQ=25)
   gcagcgCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑gct                                                                                                                              <  1:5682291/149‑1 (MQ=25)
   gcagcgCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑gct                                                                                                                              <  2:5090218/149‑1 (MQ=21)
   gcagcgCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑gct                                                                                                                              <  1:4090709/149‑1 (MQ=25)
     agcgCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑gcttc                                                                                                                            >  2:6402187/1‑151 (MQ=18)
      gcgcaGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑gcttct                                                                                                                           <  1:979329/147‑1 (MQ=25)
      gcgGAGGGGCCGGATGAGGGGGGCGCAGCGTTTGTTGGTTACGTTTCGTCGCGGTCGAGAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCAGCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑gcttct                                                                                                                           <  2:4936187/151‑1 (MQ=11)
       ggcaGGGGGCGGATGGTGGGAGCGCAGCGTTTTTTGGTTACTTGTTGTCGCGTTTGACAAAAAGTGGCTCGCCGTAAGGGCGAAAAGGGGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑gcttctt                                                                                                                          <  2:5428957/148‑1 (MQ=11)
       cgcaGGGGCCGGATGATGGGAGCGCAGCGTTTTTCGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑gcttctt                                                                                                                          <  1:4978868/148‑1 (MQ=25)
        gcaGGGGCCTGATGATGGGAGCGCAGCGTTGTTTGGTTGCTTGTTGGCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGGCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑gcttcttg                                                                                                                         <  2:5986142/149‑1 (MQ=11)
        gcaGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑gcttcttg                                                                                                                         <  2:5986207/149‑1 (MQ=37)
        gcaGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTCGACAAAAAGGGACTCGCCGAAAGCGCGAATACGTGAGTCAGCGTCGCCAGCGGACGTCGGCGGTCCACTGAGCCAGAACAGACGAGTTC‑‑‑‑‑‑‑cctgcatg                                                                                                                         >  2:6122841/3‑146 (MQ=11)
          aGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑gcttcttgct                                                                                                                       <  2:5609878/151‑1 (MQ=38)
           ggggCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑gcttcttgctt                                                                                                                      <  1:4292531/151‑1 (MQ=38)
            gggCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑gcttcttgcttc                                                                                                                     <  1:2302188/151‑1 (MQ=37)
             ggCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑gcttcttgcttct                                                                                                                    <  2:5791562/151‑1 (MQ=38)
             ggCCGGATGAGGGGAGCACAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑gcttcttgcttct                                                                                                                    <  2:4721599/151‑1 (MQ=25)
              gCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑gcttcttgcttctt                                                                                                                   <  2:5635981/151‑1 (MQ=38)
              gCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTAACTCGATATAAAGGGGAAAAGGAAAGTAAGAGTCGCCATCGCCAAAGGGATATTCACTGAGCCAAATCAGACGTGTTC‑‑‑‑‑‑‑tcttcttgcttctt                                                                                                                   >  1:1078294/1‑151 (MQ=11)
               ccGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑gcttcttgcttcttg                                                                                                                  <  1:3285339/151‑1 (MQ=38)
                 ggATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑gcttcttgcttcttgct                                                                                                                <  1:2852329/151‑1 (MQ=38)
                       tgGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTTACAGTTAGGGCGATATGGTGTGTCAGCGTCTCCTTCGCACACGGGTGGTTCACTGATCCTTAAAATTCGCGTTT‑‑‑‑‑‑‑gctacttgtttcttgct‑‑‑‑‑‑‑tc‑‑‑‑‑‑‑ttcc                                                                                            >  2:1098383/1‑149 (MQ=2)
                          gAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑gcttcttgcttcttgct‑‑‑‑‑‑‑tc‑‑‑‑‑‑‑ttgcttc                                                                                         <  2:3192526/151‑1 (MQ=38)
                            gcgcAGCGTTGTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑gcttcttgcttcttgct‑‑‑‑‑‑‑tc‑‑‑‑‑‑‑ttgcttctt                                                                                       <  2:5912982/151‑1 (MQ=38)
                                aGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑gcttcttgcttcttgct‑‑‑‑‑‑‑tc‑‑‑‑‑‑‑ttgcttcttgctt                                                                                   <  2:2992522/151‑1 (MQ=38)
                                aGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑gcttcttgcttcttgct‑‑‑‑‑‑‑tc‑‑‑‑‑‑‑ttgcttcttgctt                                                                                   <  1:1358880/151‑1 (MQ=38)
                                  cGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑gcttcttgcttcttgct‑‑‑‑‑‑‑tc‑‑‑‑‑‑‑ttgcttcttgcttct                                                                                 >  1:2024451/1‑151 (MQ=37)
                                  cGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑gcttcttgcttcttgct‑‑‑‑‑‑‑tc‑‑‑‑‑‑‑ttgcttcttgcttct                                                                                 >  1:4639457/1‑151 (MQ=38)
                                    ttttttGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑Gcttcttgcttcttgct‑‑‑‑‑‑‑tc‑‑‑‑‑‑‑ttgcttcttgcttcttg                                                                               >  2:3877234/1‑151 (MQ=35)
                                    ttttttGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑Gcttcttgcttcttgct‑‑‑‑‑‑‑tc‑‑‑‑‑‑‑ttgcttcttgcttcttg                                                                               <  2:3186567/151‑1 (MQ=38)
                                    ttttttGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑Gcttcttgcttcttgct‑‑‑‑‑‑‑tc‑‑‑‑‑‑‑ttgcttcttgcttcttg                                                                               >  1:904486/1‑151 (MQ=38)
                                    ttttttGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑Gcttcttgcttcttgct‑‑‑‑‑‑‑tc‑‑‑‑‑‑‑ttgcttcttgcttcttg                                                                               >  1:904500/1‑151 (MQ=38)
                                      ttttGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑Gcttcttgcttcttgct‑‑‑‑‑‑‑tc‑‑‑‑‑‑‑ttgcttcttgcttcttgct                                                                             <  1:6346759/151‑3 (MQ=38)
                                        ttGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑Gcttcttgcttcttgct‑‑‑‑‑‑‑tc‑‑‑‑‑‑‑ttgcttcttgcttcttgcttc                                                                           <  1:2993220/151‑5 (MQ=38)
                                         tGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑Gcttcttgcttcttgct‑‑‑‑‑‑‑tc‑‑‑‑‑‑‑ttgcttcttgcttcttgcttct                                                                          <  1:1962084/151‑6 (MQ=37)
                                          ggTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑Gcttcttgcttcttgct‑‑‑‑‑‑‑tc‑‑‑‑‑‑‑ttgcttcttgcttcttgcttctt                                                                         <  2:1197716/151‑7 (MQ=255)
                                          ggTTACTCTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑Gcttcttgcttcttgct‑‑‑‑‑‑‑tc‑‑‑‑‑‑‑ttgcttcttgcttcttgcttctt                                                                         <  2:4010776/151‑7 (MQ=255)
                                                  tttGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑gct                                                                                                                              <  2:6477863/104‑1 (MQ=255)
                                                                    aaGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAgg                                                      >  1:4783506/1‑151 (MQ=14)
                                                                     aGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGt                                                     >  2:3414067/1‑151 (MQ=14)
                                                                        gACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGCTGTGGGCATTCACATCGAGTAGGTatt                                                  >  2:1878740/1‑151 (MQ=14)
                                                                        gACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGCGTAGGTatt                                                  >  2:1879345/1‑151 (MQ=11)
                                                                        gACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTatt                                                  <  2:4639457/151‑1 (MQ=11)
                                                                         aCTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑GCTTCTTGCTTCTTGCTTCTTGCCTC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTattc                                                 >  2:6276907/1‑151 (MQ=14)
                                                                           tCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTattcat                                               <  1:4229125/151‑1 (MQ=14)
                                                                           tCGCCGTAAGGGCGAAAAGGTGAGCCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTactcat                                               >  2:77939/1‑151 (MQ=11)
                                                                             gCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTattcattc                                             <  2:4337738/151‑1 (MQ=11)
                                                                              ccGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTattcattcg                                            >  1:5357205/1‑150 (MQ=11)
                                                                              ccGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTattcattcg                                            <  2:3931590/151‑2 (MQ=11)
                                                                               cGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTattcattcgc                                           <  1:6141418/151‑3 (MQ=11)
                                                                               cGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTattcattcgc                                           >  2:6080847/1‑149 (MQ=11)
                                                                               cGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTattcattcgc                                           <  1:6527880/151‑3 (MQ=11)
                                                                                gTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTcgcg                                          <  2:5526361/151‑1 (MQ=11)
                                                                                gTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTcgcg                                          >  2:5289496/1‑151 (MQ=11)
                                                                                gTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTcgcg                                          >  1:5520189/1‑151 (MQ=11)
                                                                                 tAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCgcgc                                         <  2:4974862/151‑1 (MQ=11)
                                                                                  aaGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCa                                        <  2:1366103/151‑1 (MQ=11)
                                                                                  aaGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCa                                        <  1:6402187/151‑1 (MQ=11)
                                                                                  aaGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCa                                        >  2:4810753/1‑151 (MQ=11)
                                                                                    gggCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGCTGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCagg                                      >  2:1426314/1‑149 (MQ=11)
                                                                                    gggCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCagg                                      <  2:2128141/151‑3 (MQ=11)
                                                                                     ggCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCaggt                                     >  1:2159210/1‑148 (MQ=11)
                                                                                     ggCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGt                                     >  1:4452375/1‑151 (MQ=11)
                                                                                     ggCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGt                                     <  1:3509786/151‑1 (MQ=11)
                                                                                      gCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTg                                    >  1:5355779/1‑151 (MQ=11)
                                                                                       cGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTgg                                   >  1:2088857/1‑151 (MQ=11)
                                                                                        gAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGgc                                  >  2:3016620/1‑151 (MQ=11)
                                                                                           aaGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGgcgct                               >  1:5793897/1‑150 (MQ=11)
                                                                                           aaGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCa                               <  2:6498490/151‑1 (MQ=11)
                                                                                                gAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTc                          >  2:2679186/1‑151 (MQ=11)
                                                                                                  gTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCAc                        >  1:3852058/1‑151 (MQ=11)
                                                                                                  gTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCAc                        >  2:2054799/1‑151 (MQ=11)
                                                                                                  gTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCAc                        >  1:3894096/1‑151 (MQ=11)
                                                                                                   tCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCAcc                       <  1:1906979/151‑1 (MQ=11)
                                                                                                    cAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCt                      <  2:1978736/151‑1 (MQ=11)
                                                                                                    cAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCt                      >  1:4402424/1‑151 (MQ=11)
                                                                                                    cAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCt                      >  1:4595830/1‑151 (MQ=11)
                                                                                                      gCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCttt                    >  1:127402/1‑151 (MQ=11)
                                                                                                        gTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTcc                  <  1:1235597/151‑1 (MQ=11)
                                                                                                        gTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTcc                  <  2:3717757/151‑1 (MQ=11)
                                                                                                        gTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTcc                  <  2:3629621/151‑1 (MQ=11)
                                                                                                        gTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTcc                  <  2:6485117/151‑1 (MQ=11)
                                                                                                        gTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTcc                  <  2:2885875/151‑1 (MQ=11)
                                                                                                          cGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGc                >  1:552540/1‑151 (MQ=11)
                                                                                                           gCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGcc               >  1:524568/1‑151 (MQ=11)
                                                                                                           gCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGcc               >  2:5843614/1‑151 (MQ=11)
                                                                                                            ccATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGccc              <  2:4803367/151‑1 (MQ=11)
                                                                                                             cATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCt             >  1:1537166/1‑151 (MQ=11)
                                                                                                             cATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCt             >  2:6481485/1‑151 (MQ=11)
                                                                                                              aTCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCtt            <  1:6419024/151‑1 (MQ=11)
                                                                                                                 gCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTAcg         <  2:1119856/151‑1 (MQ=11)
                                                                                                                  cAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTAcgg        <  1:333655/151‑1 (MQ=11)
                                                                                                                  cAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTAcgg        >  1:689441/1‑151 (MQ=11)
                                                                                                                    aaTGAACTGTTCACTGAGCCAAAACAGACGACTTC‑‑‑‑‑‑‑GCTTCTTGCGTCTTGCT‑‑‑‑‑‑‑TCATACTTATTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCAATCGCGCAGGTGGCGCATAGTCCCCTTTCCGCCCTTAcggcg      <  2:2304970/151‑1 (MQ=11)
                                                                                                                       ggACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGt   >  1:1116213/1‑151 (MQ=11)
                                                                                                                       ggACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGt   <  2:2720154/151‑1 (MQ=11)
                                                                                                                       ggACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGt   <  1:6091095/151‑1 (MQ=11)
                                                                                                                        gACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTc  <  1:1056206/151‑1 (MQ=1)
                                                                                                                                                       |||||||                                                                                                                               
AGCGGAGCGTAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑GCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TC‑‑‑‑‑‑‑TTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAAGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTC  >  CP009974/4146983‑4147246

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑GCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAAGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGC  >  CP009974/4147019‑4147317
                                                                                                                                                                    |                                                                                                                                                    
TTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑GCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTG                                                                                                                                                      >  SRR10918232.907965/1‑151 (MQ=32)
TTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑GCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTG                                                                                                                                                      >  SRR10918232.907951/1‑151 (MQ=32)
  TTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑GCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGct                                                                                                                                                    <  SRR10918232.6376448/151‑3 (MQ=32)
    TTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑GCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGcttc                                                                                                                                                  <  SRR10918232.3006148/151‑5 (MQ=33)
     TGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑GCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGcttct                                                                                                                                                 <  SRR10918232.1970642/151‑6 (MQ=33)
       GTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑GCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGcttcttg                                                                                                                                               >  SRR10918232.3948690/1‑144 (MQ=33)
             TTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑GCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGcttcttggatgtg                                                                                                                                         <  SRR10918232.4427944/151‑14 (MQ=33)
              TTTGTCGCGTTTGACAAAAAGTGCCTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑GCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGcttcttggatgtgg                                                                                                                                        <  SRR10918232.649002/151‑15 (MQ=33)
               TTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑GCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGcttcttggatgtggg                                                                                                                                       <  SRR10918232.576695/151‑16 (MQ=34)
                 GTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑GCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGcttcttggatgtgggag                                                                                                                                     >  SRR10918232.6380109/1‑134 (MQ=34)
                   CGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATT                                                                                                                                          >  SRR10918232.993149/1‑151 (MQ=29)
                     CGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCA                                                                                                                                        <  SRR10918232.2766689/151‑1 (MQ=29)
                        TTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACAT                                                                                                                                     <  SRR10918232.1665079/151‑1 (MQ=29)
                        TTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACAT                                                                                                                                     <  SRR10918232.262095/151‑1 (MQ=29)
                           ACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGA                                                                                                                                  >  SRR10918232.470104/1‑151 (MQ=29)
                            CAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAG                                                                                                                                 <  SRR10918232.5791386/151‑1 (MQ=29)
                             AAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGT                                                                                                                                <  SRR10918232.2178097/151‑1 (MQ=29)
                              AAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTA                                                                                                                               <  SRR10918232.4274433/151‑1 (MQ=29)
                                AAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGG                                                                                                                             >  SRR10918232.4804780/1‑151 (MQ=29)
                                     ACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTC                                                                                                                        <  SRR10918232.5720083/151‑1 (MQ=29)
                                       TCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCAT                                                                                                                      <  SRR10918232.4247456/151‑1 (MQ=29)
                                          CCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCG                                                                                                                   >  SRR10918232.5381574/1‑151 (MQ=27)
                                           CGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGC                                                                                                                  <  SRR10918232.6169819/151‑1 (MQ=25)
                                           CGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGC                                                                                                                  <  SRR10918232.6558888/151‑1 (MQ=25)
                                            GTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCG                                                                                                                 >  SRR10918232.5545365/1‑151 (MQ=23)
                                              AAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCA                                                                                                               <  SRR10918232.6432274/151‑1 (MQ=19)
                                                 GGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGT                                                                                                            <  SRR10918232.3525148/151‑1 (MQ=10)
                                                 GGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGT                                                                                                            >  SRR10918232.2168546/1‑151 (MQ=10)
                                                 GGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGT                                                                                                            >  SRR10918232.4471807/1‑151 (MQ=10)
                                                  GCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTG                                                                                                           >  SRR10918232.5380136/1‑151 (MQ=8)
                                                   CGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGG                                                                                                          >  SRR10918232.2097917/1‑151 (MQ=6)
                                                       AAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCT                                                                                                      >  SRR10918232.5820429/1‑151 (MQ=6)
                                                        AGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCAT                                                                                                     <  SRR10918232.6200241/151‑1 (MQ=6)
                                                              GTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCAC                                                                                               >  SRR10918232.3868855/1‑151 (MQ=6)
                                                              GTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCAC                                                                                               >  SRR10918232.3911048/1‑151 (MQ=6)
                                                               TCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACC                                                                                              <  SRR10918232.1915315/151‑1 (MQ=6)
                                                                CAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCT                                                                                             >  SRR10918232.4616049/1‑151 (MQ=6)
                                                                CAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCT                                                                                             >  SRR10918232.4421617/1‑151 (MQ=6)
                                                                  GCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTT                                                                                           >  SRR10918232.127813/1‑151 (MQ=6)
                                                                    GTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCC                                                                                         <  SRR10918232.1240791/151‑1 (MQ=6)
                                                                     TCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCG                                                                                        <  SRR10918232.1814109/151‑1 (MQ=6)
                                                                      CGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGC                                                                                       >  SRR10918232.554523/1‑151 (MQ=6)
                                                                      CGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGC                                                                                       >  SRR10918232.2048391/1‑151 (MQ=6)
                                                                      CGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGC                                                                                       >  SRR10918232.554384/1‑151 (MQ=6)
                                                                       GCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGTGCATAGTCACCTTTCCGCC                                                                                      >  SRR10918232.2312584/1‑151 (MQ=6)
                                                                       GCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCC                                                                                      >  SRR10918232.526451/1‑151 (MQ=6)
                                                                         CATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCT                                                                                    >  SRR10918232.1544052/1‑151 (MQ=6)
                                                                         CATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCT                                                                                    <  SRR10918232.3010465/151‑1 (MQ=6)
                                                                          ATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTT                                                                                   <  SRR10918232.6449246/151‑1 (MQ=6)
                                                                              CAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGG                                                                               <  SRR10918232.334784/151‑1 (MQ=6)
                                                                              CAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGG                                                                               <  SRR10918232.4496760/151‑1 (MQ=6)
                                                                              CAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGG                                                                               >  SRR10918232.691935/1‑151 (MQ=6)
                                                                                  TGGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGGCACCTTTCCGCCCTgcctggcgg                                                                           >  SRR10918232.4246275/1‑142 (MQ=6)
                                                                                   GGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGT                                                                          >  SRR10918232.1120782/1‑151 (MQ=6)
                                                                                   GGACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGT                                                                          <  SRR10918232.6119236/151‑1 (MQ=6)
                                                                                    GACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTC                                                                         <  SRR10918232.1060452/151‑1 (MQ=6)
                                                                                    GACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTC                                                                         >  SRR10918232.5347266/1‑151 (MQ=6)
                                                                                     ACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCA                                                                        <  SRR10918232.1641714/151‑1 (MQ=6)
                                                                                     ACTGTTCACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCA                                                                        >  SRR10918232.249513/1‑151 (MQ=6)
                                                                                           CACTGAGCCAAAACAGACGAGTTCGCTTCTTGCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTT                                                                  >  SRR10918232.5672916/1‑151 (MQ=0)
                                                                                             CTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑GCTTCTTGCTTCTTGCGTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCGCGCAGGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGT                                                                >  SRR10918232.4145757/1‑151 (MQ=0)
                                                                                                                          GCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGCGCAGGTGGCG                                                                                                        <  SRR10918232.1084793/82‑1 (MQ=0)
                                                                                                                          GCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGCGCAGGTGGCG                                                                                                        >  SRR10918232.488471/1‑82 (MQ=0)
                                                                                                                          GCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGCGCAGGTGGCG                                                                                                        >  SRR10918232.6344195/1‑82 (MQ=0)
                                                                                                                          GCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGCGCAGGTGGC                                                                                                         <  SRR10918232.3397062/81‑1 (MQ=2)
                                                                                                                          GCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGCGCAGG                                                                                                             <  SRR10918232.6354426/77‑1 (MQ=12)
                                                                                                                          GCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGCGCAG                                                                                                              >  SRR10918232.120170/1‑76 (MQ=15)
                                                                                                                          GCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATCCACATTGAGTAGGTATTCATTCGCG                                                                                                                 <  SRR10918232.3521659/73‑1 (MQ=25)
                                                                                                                          GCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTG                                                                                                                                                      <  SRR10918232.2658894/36‑1 (MQ=0)
                                                                                                                          GCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTG                                                                                                                                                      >  SRR10918232.5735558/1‑36 (MQ=0)
                                                                                                                          GCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTG                                                                                                                                                      >  SRR10918232.1045066/1‑36 (MQ=0)
                                                                                                                          GCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTG                                                                                                                                                      <  SRR10918232.2802343/36‑1 (MQ=0)
                                                                                                                          GCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTG                                                                                                                                                      <  SRR10918232.4751528/36‑1 (MQ=0)
                                                                                                                          GCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTG                                                                                                                                                      >  SRR10918232.1271531/1‑36 (MQ=0)
                                                                                                                            TTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAAGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCT                                 >  SRR10918232.6382416/1‑151 (MQ=0)
                                                                                                                               TTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTG                                                                                                                                                      >  SRR10918232.3921497/1‑31 (MQ=0)
                                                                                                                               TTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTG                                                                                                                                                      <  SRR10918232.5606876/31‑1 (MQ=0)
                                                                                                                               TTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTG                                                                                                                                                      <  SRR10918232.5010149/31‑1 (MQ=0)
                                                                                                                               TTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTG                                                                                                                                                      >  SRR10918232.5726073/1‑31 (MQ=0)
                                                                                                                                  CT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAAGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTG‑GCTCC                          <  SRR10918232.3532586/151‑1 (MQ=0)
                                                                                                                                           TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAAGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGgctccta                         >  SRR10918232.2258991/1‑144 (MQ=0)
                                                                                                                                             TTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAAGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTG‑GCTCCTATC                      >  SRR10918232.2661724/1‑151 (MQ=0)
                                                                                                                                               GCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAAGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCATACGCGACAAAAAGTCACCAAAAAACGCTGgcttctatact                     >  SRR10918232.2195813/1‑140 (MQ=0)
                                                                                                                                                          CTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAAGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTG‑GCTCCTATCATCCGGCCCCTGC         <  SRR10918232.3290331/151‑1 (MQ=0)
                                                                                                                                                             GCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAAGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGgctccagatcggaagagcacacgtc       >  SRR10918232.4434507/1‑126 (MQ=0)
                                                                                                                                                             GCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAAGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTG‑GCTCCTATCATCCGGCCCCTGCGCT      >  SRR10918232.5609978/1‑151 (MQ=0)
                                                                                                                                                                 CTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAAGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACTAAAAAACGCTG‑GCTCCTATCATCCGGCTCCTGCGCTGCGC  >  SRR10918232.834315/1‑151 (MQ=5)
                                                                                                                                                                    |                                                                                                                                                    
TTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAATGGACTGTTCACTGAGCCAAAACAGACGAGTTC‑‑‑‑‑‑‑GCTTCTTGCT‑‑‑‑‑‑‑TCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAAGTGGCGCATAGTCACCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGC  >  CP009974/4147019‑4147317

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑