Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
336 |
367.5 |
14491858 |
96.8% |
14028118 |
150.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP009974 |
3,837,678 |
C→T |
intergenic (+229/‑322) |
RPPX_17095 → / → RPPX_17100 |
proteophosphoglycan precursor/cupin |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009974 | 3,837,678 | 0 | C | T | 91.2%
| 174.7
/ 6.9
| 115 | intergenic (+229/‑322) | RPPX_17095/RPPX_17100 | proteophosphoglycan precursor/cupin |
| Reads supporting (aligned to +/- strand): ref base C (7/3); new base T (45/59); total (53/62) |
| Fisher's exact test for biased strand distribution p-value = 1.82e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 117 total aligned reads displayed.
GTTCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGT‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCACCCGTCGT > CP009974/3837528‑3837793
|
gtTCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGCGGCACACACGGCGGTAGGAGCGCGGGCACCCCCGAAAAGACCCGGCCAGCGGGCCAATTTCGCCCCGCGGTTCACCCCCgccgccgcc > 2:3874511/1‑151 (MQ=9)
cACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGGCTGCGCGGTCCTCTGTAGGAGCGGGTGCACCCGCGCAAGGGCCGGGCCGGCCCGCCAATTGTCACCAGCCGGTCACCGGTGCGGCCGCCAccctc > 2:4534666/1‑148 (MQ=9)
cACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGGTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCACCCGCCGCCCACCGTAGCTGCCGCCACCGTa > 2:667946/1‑151 (MQ=9)
cACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTAcc < 1:6081616/151‑1 (MQ=255)
aCCGTTGGCGCCGCTACCGTATGCGCGGGTAAACCCGCTACTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCg < 2:592369/151‑1 (MQ=255)
aCCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCg < 1:612182/151‑1 (MQ=255)
ccATTGCCGCCGCTACTGTATTCGCGGGTCAACCCGCTCCTACACCCGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGt < 1:2724719/151‑1 (MQ=255)
ccATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGt < 1:2724447/151‑1 (MQ=255)
aTTGCCGCCGCTCCCGTATTCGCGGGTAAACCCGCTCCTACACACGCGTCGAGGGGGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTAt < 1:4826913/151‑1 (MQ=255)
aTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGGGGGCCGCACCGCCCGCTGTAGGAGCGGGGCCACCCCCGACCGGGCCGCGCCCCCCGGCCAATTACCACCCGCCGGACACCCGTGCCGCCGCTACAGtct > 2:6996364/1‑149 (MQ=2)
aTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGCTGCCGCCGCCACCGtct > 2:6380148/1‑149 (MQ=255)
gtGCCGCCGCTACCGGATTCGCGGCCAAACCCGCCCCTACACCCGCGGCGAGGGCGGCACAGGCCGTTGTCGGCGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTAtt < 2:3916097/150‑1 (MQ=11)
tGCCGCCGCGACCGTACTCGCGTGTAAACCCGCTCCTACACACGCATCGAGTGCGGCAGAGGCCCTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTc < 2:5785543/151‑1 (MQ=11)
ggccgccGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTc < 1:34977/150‑1 (MQ=37)
cgccgccGCTAGCGTATTTGCGGTCAGACCCGCTGCTACGCTCGCAGCGTGGGCGGCACAGGCCGTTGTAGGGGCGGGTGCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTc < 2:1564502/150‑1 (MQ=11)
gccgccGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGATAACGTATTcg > 1:2212811/1‑151 (MQ=255)
ccgccgCTGCCGTCGTGGCGGGCAAACCCGCTCCTGCACACGCGTCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTACACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTcgc < 2:2002286/151‑1 (MQ=11)
ccgccgCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGCCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTcgc > 2:145255/1‑151 (MQ=255)
ccgccgCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCGGGCCAATTTCGGCCCGCGGTTCACCCTTGCCCCCGCCACCGTATTcgc > 2:5429941/1‑151 (MQ=14)
cgccgcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTtgcg > 1:4948163/1‑151 (MQ=255)
cgccgcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCCCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCCCCGTTGCCGCCGCTCCCCTATTcgcc > 2:3825879/1‑150 (MQ=11)
gccgcTACGGTACTCGCGGGTAAACCCGCTCCTACACCCGCGTCGAGGGCGGCACAGGCCGTTGTAGGCGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCgg < 2:6240240/151‑1 (MQ=11)
gccgcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCgg < 1:6109592/151‑1 (MQ=38)
gccgcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCCCTACCGTATCcgccc > 2:1868589/1‑149 (MQ=255)
gccgcGACCGGCTTCGCGGGTAGACCGGCCCCTACAGCCGCGTCGAGGGCGGCACAGGCCGTTGTAGGCGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCgg < 2:4919572/151‑1 (MQ=11)
gcgcgACCGTGTTCGCGGGTCACCCCGCGCCTACGCACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCggg < 2:5619905/150‑1 (MQ=11)
gcgcTACGGTGTTCGCGGGTAAACCGGCTCCTACACACGCGTCGAGGGCGGCAGAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCggg < 2:1985851/150‑1 (MQ=11)
ccgcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCggg < 1:665868/151‑1 (MQ=37)
ccgcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCggg > 2:419778/1‑151 (MQ=37)
ccgcTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TGC‑TC‑TGGCCTGCGCGGTCCTCTGTCGCAGCGGGTTCACCCCCGAAAGCGCCGGGCCTGCTCGCCCATTTTCACCAGCCGCTCCCCGTTGCTGCCGCCCCCGTATTCCCGGGCaa > 2:1690578/1‑151 (MQ=9)
ccgcTACCGTATTCGCGGGTAAACCCGCTCCGCCTCCCGCATCGAGGGCGGCCCAGGCCGGGGTAGGAGCGGGTTCCCCCGCGAAAGGGCCGGGCCTGCCGGGCAATTTCCACCCGCCGTCCACCGTTGGCGCCGCGGCCGTATGTGCggg > 2:1662855/1‑151 (MQ=14)
cgcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGt > 1:3150660/1‑151 (MQ=38)
cgcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGt > 1:3437865/1‑151 (MQ=38)
cgcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGt > 1:3739869/1‑151 (MQ=38)
cgcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTCGAAGGAGCGGGTTCACCCGCGAGAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGCTCCCCGTTGCCGCCGCTACCGTCTTCGCGGGt > 1:3739848/1‑151 (MQ=11)
cTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTaa > 2:352510/1‑151 (MQ=25)
cTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGCaa > 1:2066109/1‑151 (MQ=25)
cGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAAccc > 1:6029902/1‑151 (MQ=25)
cGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAAccc < 1:1134982/151‑1 (MQ=25)
gTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCg > 1:2264430/1‑151 (MQ=21)
gTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCg > 1:2048370/1‑151 (MQ=21)
gTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCg < 1:3808026/151‑1 (MQ=25)
tCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTcc < 1:6691975/151‑1 (MQ=18)
tCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTcc > 1:703470/1‑151 (MQ=25)
gcgcgGGTAGACCCGCTGCTACACCCGGAGCGAGGGCGGCACAGGCCGTTGTAGGGGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTcc < 2:5782163/150‑1 (MQ=11)
gcgcgGGTAGACCCGCGCCTACGCGCGCGGCGGGGGCGGCAGAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTcc < 2:2930639/150‑1 (MQ=11)
ccgcgGGTAGACCCGATCGTACACAGGAATCGAAGGCGGAGCAGGCCGTTGTCGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTcc < 1:5166651/150‑1 (MQ=11)
ggcgGGTAAACCCGCTCCTACACCCGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCt < 1:6354057/150‑1 (MQ=25)
cgcgGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAACCCCGccccc > 2:7228749/1‑150 (MQ=255)
cgcgGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTccc > 2:3277168/1‑150 (MQ=25)
cgcgGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGGAAACCCGCTCCt > 2:6332381/1‑151 (MQ=21)
gtgggTAGACCCGCTGCGACACACGCGTCGGGGGCGGCACAGGCCGTTGTCGGAGCGGGTACACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCtg < 2:5074338/149‑2 (MQ=11)
gcgGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGAGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTGGCCGCGGCTACCGTATTCGCGGGTAAACGCGCTCCtg > 2:5664017/1‑150 (MQ=11)
ggggTAAACCCGCTCCTGCGCCGGCATCGTGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCtgc < 1:4941941/150‑3 (MQ=11)
gggTCAACCCGCCCCTACACACGCAGCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTgca < 1:6469116/151‑1 (MQ=11)
gTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTCAACCCGCTcccgcacc > 2:6771479/1‑145 (MQ=255)
tAAACCGGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTgcacac < 1:7122654/151‑1 (MQ=255)
tAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTgcacac > 2:6371442/1‑151 (MQ=18)
tAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTgcacac > 1:1069935/1‑151 (MQ=17)
agcccGCACCTACAAACGCATCAAGGGCGGCAAAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCCCCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGc < 1:997845/149‑1 (MQ=11)
aaCCCGCTCCTGCGCACGCGGCGAGGGCGGCACAGGACGTTGTAGGAGCGGGCTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGc < 2:6379938/151‑1 (MQ=11)
cGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTACACCCGCTCCTGCCCACGCATcc > 2:3661188/1‑150 (MQ=255)
cGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCCTCg > 2:3943138/1‑151 (MQ=12)
cGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCg > 1:5966978/1‑151 (MQ=12)
cGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCACCg > 2:3100928/1‑151 (MQ=12)
tcatACACACGCAGCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCggtg < 1:2709785/148‑4 (MQ=11)
tACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTCCACACGCATCggtggtt > 2:3999330/1‑145 (MQ=9)
tgcACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTGCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAgggccgggc < 2:4541906/149‑1 (MQ=2)
ccccGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATCCGCGGGTAACCCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctg < 1:1533915/150‑1 (MQ=2)
cccGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctgc < 1:954749/151‑1 (MQ=2)
ccGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctgct < 2:2466324/151‑1 (MQ=11)
ccGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctgct < 2:6350226/151‑1 (MQ=2)
ccGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctgct < 1:5036672/151‑1 (MQ=2)
ccGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTCCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctgct < 2:2319301/151‑1 (MQ=2)
cgcgAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctgctg < 1:4872579/151‑1 (MQ=2)
cgcgAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCATACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctgctg < 2:310282/151‑1 (MQ=2)
gcgAAAGGGCCGGGCCTGCTGGCCAGTGTTCACCGGCCGCGCACCGTTGCTGCCGCCACCGGATTCGCGGGTAAACCCGCTCCGACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTgg < 2:4764041/151‑1 (MQ=2)
gcgAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTgg < 2:422535/151‑1 (MQ=2)
gAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGcc > 1:5310161/1‑151 (MQ=2)
aaaGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCa > 1:6613035/1‑151 (MQ=2)
aaaGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCa < 1:4193960/151‑1 (MQ=2)
gggccgggccTGCTGGCCAATTTTCACCAGCCGCTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAtt > 1:3268388/1‑150 (MQ=2)
ggccgggccTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATGCGCGGGTAACCCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAttt < 2:1822290/151‑3 (MQ=2)
gcggggccTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAACCCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAtttt < 1:5417885/148‑4 (MQ=2)
gccgggccTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAtttt < 2:4483641/151‑4 (MQ=2)
cggggcgTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTAC‑CCTG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAttttc < 2:6737841/149‑5 (MQ=2)
cgggccTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGC‑GGTCGTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCACTCTTCa > 1:4679083/1‑151 (MQ=2)
gggccTGCTGGCCAGTTTTCACCGGCCGTTCACCGTTGCTGCCGCTACCGTATCCGCGGGTGGCGCCGCGCCTACAC‑TGC‑TCG‑GGAGTGCGCGGGCCGC‑TGTAGGGGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAc < 2:3039169/151‑1 (MQ=2)
ggccTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAcc > 1:6179779/1‑151 (MQ=2)
ggccTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAcc < 2:3395752/151‑1 (MQ=2)
gccTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAccc > 1:5171361/1‑151 (MQ=2)
ccTGCTGGCCAATTTTCACCAGCCGTGCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAccag < 2:3813885/151‑3 (MQ=2)
ccTGCTGGCCAATTTTCACCAGCCGCTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAccag > 1:3541201/1‑149 (MQ=2)
tgctgGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TGC‑TC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCCATTTTCAccagcc > 1:2231078/1‑147 (MQ=2)
tgctgGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAccagcc > 1:3376517/1‑147 (MQ=2)
gctgGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAccagccg > 1:3731712/1‑146 (MQ=2)
ctgGCCAATGTCCACCAGCCGTCCACCGTTGCTGCCGCCCCCGTAGTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAccagccgc < 1:5190233/151‑7 (MQ=2)
gCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAtttt > 2:1051431/1‑135 (MQ=2)
gCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAtttt < 1:1051431/138‑4 (MQ=2)
ctgccgccACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTC‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTgg < 1:4090654/100‑1 (MQ=2)
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GTTCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGT‑TGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCACCCGTCGT > CP009974/3837528‑3837793
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTTCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGC > CP009974/3837528‑3837722
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GTTCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCT > SRR10918235.6259752/1‑151 (MQ=51)
CACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACC < SRR10918235.6109804/151‑1 (MQ=44)
ACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCG < SRR10918235.614397/151‑1 (MQ=40)
CCATTGCCGCCGCTACTGTATTCGCGGGTCAACCCGCTCCTACACCCGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGT < SRR10918235.2736436/151‑1 (MQ=35)
CCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGT < SRR10918235.2736164/151‑1 (MQ=38)
CCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCAGGGGCGGCACAGGCCCTTGTAGAAGCCAGTTCACCCGCGCAAGGGCCGCGGCTGCAGGCCAATTTCAACCCCCAGTTCACCCTTGCCGCCCCTACCGT > SRR10918235.1092389/1‑151 (MQ=21)
ATTGCCGCCGCTCCCGTATTCGCGGGTAAACCCGCTCCTACACACGCGTCGAGGGGGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTAT < SRR10918235.4848279/151‑1 (MQ=31)
GGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTC < SRR10918235.35101/151‑1 (MQ=31)
GCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGATAACGTATTCG > SRR10918235.2222723/1‑151 (MQ=36)
CGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGGCGCTACCGTATTTGCG > SRR10918235.4970077/1‑151 (MQ=30)
GCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGG < SRR10918235.6137919/151‑1 (MQ=31)
CCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGG < SRR10918235.668272/151‑1 (MQ=31)
CGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT > SRR10918235.3164365/1‑151 (MQ=29)
CGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT > SRR10918235.3453099/1‑151 (MQ=29)
CGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT > SRR10918235.3756514/1‑151 (MQ=29)
CGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTCGAAGGAGCGGGTTCACCCGCGAGAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGCTCCCCGTTGCCGCCGCTACCGTCTTCGCGGGT > SRR10918235.3756493/1‑151 (MQ=25)
CTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGCAA > SRR10918235.2075397/1‑151 (MQ=25)
ACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAAC > SRR10918235.2826971/1‑151 (MQ=21)
CGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCC > SRR10918235.6057834/1‑151 (MQ=21)
CGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCC > SRR10918235.4655807/1‑151 (MQ=21)
CGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCC < SRR10918235.1139449/151‑1 (MQ=21)
CGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGCTAAACCC > SRR10918235.865363/1‑151 (MQ=20)
GTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCG < SRR10918235.3824939/151‑1 (MQ=21)
GTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCG > SRR10918235.2057598/1‑151 (MQ=21)
GTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCG > SRR10918235.2274546/1‑151 (MQ=21)
TATTCGCGGGTAAACCCGCTCCTACACA‑‑CAT‑‑‑‑‑‑‑‑GCACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGACGGGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACCACCGTATTCGCGCGTAAACCCGCTCCTACACAC > SRR10918235.2337182/1‑151 (MQ=0)
TATTCGCGGGTAAACCCGCTCCTACACA‑‑CAT‑‑‑‑‑‑‑‑GCACAGGCCGTCGTAGGAGCGGGGTTACCCGCGAAGAGGACGGGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACAC > SRR10918235.2334289/1‑151 (MQ=0)
TCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCC > SRR10918235.705975/1‑151 (MQ=21)
TCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCC < SRR10918235.6723345/151‑1 (MQ=21)
CCGCGGGTAGACCCGATCGTACACAGGAATCGAAGGCGGAGCAGGCCGTTGTCGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCC < SRR10918235.5189753/151‑1 (MQ=16)
GGCGGGTAAACCCGCTCCTACACCCGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCT < SRR10918235.6383607/151‑1 (MQ=20)
GGGGTAAACCCGCTCCTGCGCCGGCATCGTGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGC < SRR10918235.4963822/151‑1 (MQ=14)
CGGGTAAACCCGCTCCTACACA‑‑CAT‑‑‑‑‑‑‑‑GCACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGACGGGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACatgcac > SRR10918235.2541579/1‑145 (MQ=0)
gagtaaacccgggcctacgagcgcaccgagggcggcacgggtcgtggtaggtgcggttccgCCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCA < SRR10918235.6339151/90‑1 (MQ=0)
GGGTCAACCCGCCCCTACACACGCAGCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCA < SRR10918235.6499273/151‑1 (MQ=10)
GGGTAAACCCCGTCCTACACGCGCATCGAGGGCGGCTCAGGCCGATGTGGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCA < SRR10918235.6340099/151‑1 (MQ=9)
gccaaaccggtccctacagctgcagcgagtgctgcccatgccgtcctatGAGCGGGTACACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCAC < SRR10918235.1622246/102‑1 (MQ=0)
GGTAAACCCGCTCCTACACA‑‑CAT‑‑‑‑‑‑‑‑GCACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGACGGGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACatgcacag > SRR10918235.518849/1‑143 (MQ=0)
GGTAAACCCGCTCCTACACA‑‑CAT‑‑‑‑‑‑‑‑GCACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGACGGGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACatgcacag > SRR10918235.5888621/1‑143 (MQ=0)
TAAACCGGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACAC < SRR10918235.7156739/151‑1 (MQ=7)
TAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACAC > SRR10918235.1074074/1‑151 (MQ=7)
AGCCCGCACCTACAAACGCATCAAGGGCGGCAAAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCCCCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGC < SRR10918235.1001600/151‑1 (MQ=6)
AACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGC > SRR10918235.6020673/1‑151 (MQ=7)
ccgccccagcacacgaggcgaaGGCGGCACAGGCCGTTGTCGGCGCGGGTAAACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATC < SRR10918235.851075/129‑1 (MQ=6)
CCCCTCCTACGCACGCAGCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATC < SRR10918235.5121724/151‑1 (MQ=7)
CGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCG > SRR10918235.5994609/1‑151 (MQ=7)
TCATACACACGCAGCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCGgtg < SRR10918235.2721451/151‑4 (MQ=1)
GCCTACAGACGCATCGGGGGCGGCACGGGCCGTTGTCGGGGCGGGTTCACCTGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCGgtg < SRR10918235.4645106/151‑4 (MQ=0)
CCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCGgtgg < SRR10918235.3882132/151‑5 (MQ=0)
CCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCGgtgg < SRR10918235.7120058/151‑5 (MQ=0)
CCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCGgtgg > SRR10918235.2457310/1‑147 (MQ=0)
CTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCGgtggt > SRR10918235.3681891/1‑146 (MQ=0)
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GTTCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGC > CP009974/3837528‑3837722
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
